Wall clock time and date at job start Tue Mar 31 2020 10:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46844 * 2 1 4 4 C 1.50701 * 109.46961 * 119.99397 * 2 1 3 5 5 C 1.35360 * 126.39129 * 325.31996 * 4 2 1 6 6 C 1.41495 * 105.50826 * 180.08818 * 5 4 2 7 7 C 1.47713 * 126.52381 * 179.90121 * 6 5 4 8 8 O 1.21579 * 119.99572 * 359.71886 * 7 6 5 9 9 N 1.34770 * 120.00327 * 179.71091 * 7 6 5 10 10 C 1.46502 * 120.00052 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47078 * 325.00479 * 10 9 7 12 12 C 1.53003 * 109.47255 * 85.00318 * 10 9 7 13 13 C 1.53002 * 109.46983 * 205.00301 * 10 9 7 14 14 N 1.46495 * 109.47352 * 55.00440 * 13 10 9 15 15 C 1.46501 * 119.99450 * 270.00059 * 14 13 10 16 16 C 1.36931 * 120.00510 * 89.99478 * 14 13 10 17 17 H 1.07996 * 119.99905 * 20.38539 * 16 14 13 18 18 C 1.38815 * 120.00269 * 200.38500 * 16 14 13 19 19 N 1.31622 * 119.99988 * 14.99859 * 18 16 14 20 20 Si 1.86801 * 119.99903 * 195.00979 * 18 16 14 21 21 H 1.48495 * 109.47460 * 84.99852 * 20 18 16 22 22 H 1.48500 * 109.46532 * 204.99920 * 20 18 16 23 23 H 1.48500 * 109.46980 * 324.99648 * 20 18 16 24 24 N 1.31817 * 106.96270 * 359.64502 * 6 5 4 25 25 N 1.28463 * 110.06900 * 0.22304 * 24 6 5 26 26 C 1.46508 * 124.88190 * 180.02562 * 25 24 6 27 27 H 1.08993 * 109.47046 * 60.00643 * 1 2 3 28 28 H 1.09006 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47422 * 300.00075 * 1 2 3 30 30 H 1.08990 * 109.47302 * 239.99357 * 2 1 3 31 31 H 1.09003 * 109.47298 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46967 * 299.99350 * 3 2 1 33 33 H 1.08990 * 109.47696 * 59.99598 * 3 2 1 34 34 H 1.08005 * 127.24538 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00297 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47040 * 59.99540 * 12 10 9 37 37 H 1.08994 * 109.47159 * 180.02562 * 12 10 9 38 38 H 1.09007 * 109.46790 * 300.00126 * 12 10 9 39 39 H 1.09004 * 109.46910 * 174.99950 * 13 10 9 40 40 H 1.08999 * 109.47123 * 294.99576 * 13 10 9 41 41 H 1.08996 * 109.47445 * 95.13115 * 15 14 13 42 42 H 1.09002 * 109.47148 * 215.12725 * 15 14 13 43 43 H 1.09002 * 109.47505 * 335.11865 * 15 14 13 44 44 H 0.96997 * 119.99778 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.46942 * 90.02324 * 26 25 24 46 46 H 1.09003 * 109.46730 * 210.02321 * 26 25 24 47 47 H 1.09000 * 109.46886 * 330.02231 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4552 -0.7011 2.4549 6 6 2.2880 -1.5020 3.2717 7 6 2.0874 -1.8032 4.7038 8 8 1.1305 -1.3403 5.2941 9 7 2.9649 -2.5911 5.3561 10 6 2.7656 -2.8902 6.7764 11 1 2.3356 -2.0209 7.2739 12 6 1.8154 -4.0810 6.9184 13 6 4.1113 -3.2320 7.4193 14 7 5.0583 -2.1403 7.1796 15 6 5.9040 -2.1538 5.9834 16 6 5.1531 -1.1074 8.0736 17 1 4.8004 -1.2356 9.0862 18 6 5.7024 0.1045 7.6782 19 7 5.8591 0.3698 6.3985 20 14 6.2195 1.3588 8.9622 21 1 7.5948 1.0504 9.4298 22 1 6.1929 2.7182 8.3650 23 1 5.2819 1.3050 10.1125 24 7 3.2739 -1.9328 2.5102 25 7 3.1390 -1.4794 1.3159 26 6 4.0539 -1.7573 0.2058 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8898 34 1 0.5505 -0.1887 2.7473 35 1 3.7284 -2.9601 4.8853 36 1 2.2454 -4.9502 6.4208 37 1 1.6668 -4.3032 7.9750 38 1 0.8567 -3.8374 6.4603 39 1 3.9772 -3.3676 8.4925 40 1 4.4993 -4.1522 6.9825 41 1 5.4309 -1.5653 5.1974 42 1 6.8775 -1.7254 6.2219 43 1 6.0330 -3.1806 5.6411 44 1 6.2433 1.2165 6.1223 45 1 3.7246 -2.6530 -0.3208 46 1 4.0576 -0.9118 -0.4822 47 1 5.0600 -1.9136 0.5948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754310883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:23 Heat of formation + Delta-G solvation = 32.289365 kcal Electronic energy + Delta-G solvation = -26582.059922 eV Core-core repulsion = 22994.321876 eV Total energy + Delta-G solvation = -3587.738046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.68786 -40.52033 -38.03576 -36.69723 -35.76250 -34.44480 -33.09739 -31.84289 -30.54051 -28.29889 -28.02783 -27.97887 -27.41407 -24.77011 -23.62022 -23.21981 -21.71484 -21.37010 -20.37011 -18.79992 -18.31855 -17.51647 -17.26594 -17.03016 -16.65969 -15.88103 -15.56709 -15.40139 -15.23180 -15.12309 -14.74405 -14.62094 -14.49470 -13.92709 -13.77309 -13.60995 -13.41984 -13.37065 -13.09960 -13.00225 -12.84631 -12.68149 -12.58044 -12.54772 -12.31223 -12.11265 -12.05297 -11.83643 -11.79666 -11.75715 -11.67650 -11.11267 -10.63198 -10.16470 -9.90523 -9.82129 -8.76577 -7.81561 -5.25911 0.60511 1.13983 1.43440 1.44480 1.52323 1.61514 2.30593 2.51222 2.54644 3.31163 3.36576 3.53385 3.70062 3.88510 4.08275 4.18641 4.21242 4.37242 4.38814 4.43108 4.48320 4.52323 4.63591 4.64591 4.72327 4.76466 4.81113 4.82118 4.88996 4.96930 4.99084 5.01755 5.13994 5.17704 5.32399 5.35226 5.37150 5.38220 5.44284 5.64231 5.68850 5.77747 5.91853 6.32197 6.58393 6.97072 7.16333 7.31321 7.89325 8.30461 9.21142 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004295 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.170911 B = 6518.112912 C = 7371.149399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.144 4.144 4 C 0.031 3.969 5 C -0.203 4.203 6 C -0.040 4.040 7 C 0.595 3.405 8 O -0.587 6.587 9 N -0.680 5.680 10 C 0.118 3.882 11 H 0.041 0.959 12 C -0.145 4.145 13 C 0.142 3.858 14 N -0.611 5.611 15 C 0.180 3.820 16 C -0.261 4.261 17 H 0.072 0.928 18 C -0.053 4.053 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.272 1.272 24 N -0.273 5.273 25 N -0.276 5.276 26 C 0.072 3.928 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.152 0.848 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.006 0.994 42 H 0.012 0.988 43 H 0.032 0.968 44 H 0.242 0.758 45 H 0.110 0.890 46 H 0.123 0.877 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -6.276 -18.231 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.095 4.095 5 C -0.232 4.232 6 C -0.199 4.199 7 C 0.381 3.619 8 O -0.467 6.467 9 N -0.329 5.329 10 C 0.011 3.989 11 H 0.059 0.941 12 C -0.203 4.203 13 C 0.016 3.984 14 N -0.333 5.333 15 C 0.035 3.965 16 C -0.391 4.391 17 H 0.090 0.910 18 C -0.248 4.248 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.208 1.208 22 H -0.228 1.228 23 H -0.197 1.197 24 N -0.110 5.110 25 N -0.065 5.065 26 C -0.067 4.067 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.024 0.976 42 H 0.031 0.969 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.128 0.872 46 H 0.141 0.859 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.928 -6.547 -17.911 19.971 hybrid contribution 0.029 1.513 0.789 1.706 sum -5.899 -5.035 -17.122 18.797 Atomic orbital electron populations 1.21827 0.92536 1.02486 1.03094 1.19851 0.97150 0.95295 0.91410 1.21870 1.01000 0.94387 1.02964 1.21843 0.89926 0.99240 0.98444 1.21539 1.03486 1.05706 0.92422 1.21836 0.97192 1.06079 0.94783 1.17251 0.82230 0.77821 0.84601 1.90671 1.32901 1.54597 1.68517 1.45653 1.26879 1.49026 1.11295 1.21818 0.98977 0.97590 0.80521 0.94108 1.22020 0.98086 0.97092 1.03142 1.21392 0.86868 0.90738 0.99441 1.44136 1.41532 1.23016 1.24660 1.20547 0.93041 0.94857 0.88079 1.19539 1.36295 0.91353 0.91958 0.91047 1.25677 1.02945 0.98777 0.97393 1.70279 1.49522 1.23346 1.14731 0.85343 0.78493 0.78076 0.78917 1.20800 1.22790 1.19701 1.73478 1.22782 1.21996 0.92695 1.45792 1.19594 1.33476 1.07609 1.22626 0.93068 1.05640 0.85328 0.89274 0.92517 0.93249 0.86973 0.92940 0.88988 0.93924 0.83059 0.76059 0.90763 0.89810 0.94206 0.91065 0.90756 0.97566 0.96930 0.94968 0.94873 0.87189 0.85860 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.78 71.98 0.63 -1.45 16 2 C -0.02 -0.27 2.89 -11.54 -0.03 -0.31 16 3 C -0.14 -2.27 9.17 71.98 0.66 -1.61 16 4 C 0.03 0.80 5.84 41.40 0.24 1.04 16 5 C -0.20 -7.10 9.95 22.41 0.22 -6.87 16 6 C -0.04 -1.66 7.13 42.45 0.30 -1.36 16 7 C 0.60 27.72 7.79 86.75 0.68 28.39 16 8 O -0.59 -30.64 16.59 -3.96 -0.07 -30.71 16 9 N -0.68 -29.04 4.42 -445.52 -1.97 -31.01 16 10 C 0.12 4.83 2.88 44.99 0.13 4.96 16 11 H 0.04 2.04 7.58 -2.39 -0.02 2.02 16 12 C -0.14 -4.54 9.48 71.98 0.68 -3.86 16 13 C 0.14 5.68 5.33 86.38 0.46 6.14 16 14 N -0.61 -30.92 2.78 -726.95 -2.02 -32.94 16 15 C 0.18 8.96 7.60 127.77 0.97 9.93 16 16 C -0.26 -14.82 9.68 84.04 0.81 -14.01 16 17 H 0.07 3.94 7.86 -2.91 -0.02 3.91 16 18 C -0.05 -3.09 5.06 84.86 0.43 -2.66 16 19 N -0.93 -57.69 10.67 21.65 0.23 -57.46 16 20 Si 0.96 47.49 29.58 68.60 2.03 49.52 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 N -0.27 -9.82 11.67 -48.17 -0.56 -10.39 16 25 N -0.28 -7.42 3.70 -355.90 -1.32 -8.74 16 26 C 0.07 1.03 10.89 127.77 1.39 2.42 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.88 7.35 -2.38 -0.02 0.86 16 30 H 0.11 1.08 7.42 -2.39 -0.02 1.06 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.15 5.20 7.46 -2.91 -0.02 5.18 16 35 H 0.40 16.49 6.91 -92.71 -0.64 15.85 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.07 2.68 8.03 -2.38 -0.02 2.66 16 40 H 0.07 2.51 7.86 -2.39 -0.02 2.49 16 41 H 0.01 0.34 6.97 -2.39 -0.02 0.32 16 42 H 0.01 0.66 7.22 -2.39 -0.02 0.64 16 43 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 44 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.12 1.00 7.45 -2.39 -0.02 0.98 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -80.97 382.88 4.21 -76.76 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.31 Total: 24.19 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.58 Total: 20.77 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -5.64 Total: -140.53 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.07 Total: -30.71 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -80.97 4.21 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.046 kcal (2) G-P(sol) polarization free energy of solvation -80.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds