Wall clock time and date at job start Tue Mar 31 2020 10:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47287 * 240.00420 * 2 1 3 5 5 N 1.46499 * 109.46887 * 184.99680 * 4 2 1 6 6 C 1.46508 * 120.00119 * 269.99558 * 5 4 2 7 7 C 1.36940 * 120.00324 * 89.99922 * 5 4 2 8 8 H 1.08000 * 119.99233 * 22.09283 * 7 5 4 9 9 C 1.38806 * 120.00391 * 202.09239 * 7 5 4 10 10 N 1.31627 * 120.00002 * 11.87900 * 9 7 5 11 11 Si 1.86796 * 120.00207 * 191.87656 * 9 7 5 12 12 H 1.48497 * 109.47064 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47277 * 119.99893 * 11 9 7 14 14 H 1.48499 * 109.47374 * 240.00102 * 11 9 7 15 15 N 1.46503 * 109.47235 * 120.00011 * 2 1 3 16 16 C 1.34771 * 119.99967 * 275.00067 * 15 2 1 17 17 O 1.21572 * 120.00564 * 0.02562 * 16 15 2 18 18 C 1.47711 * 119.99984 * 179.97438 * 16 15 2 19 19 C 1.41498 * 126.51832 * 180.02562 * 18 16 15 20 20 C 1.35368 * 105.50464 * 180.02562 * 19 18 16 21 21 N 1.35042 * 107.22754 * 0.02562 * 20 19 18 22 22 C 1.46492 * 124.88302 * 179.72978 * 21 20 19 23 23 C 1.53002 * 109.47036 * 75.00603 * 22 21 20 24 24 C 1.53002 * 109.47011 * 194.99972 * 22 21 20 25 25 C 1.52996 * 109.47583 * 315.00308 * 22 21 20 26 26 N 1.28470 * 110.22869 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.47522 * 299.99329 * 1 2 3 28 28 H 1.08999 * 109.47649 * 60.00166 * 1 2 3 29 29 H 1.09010 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47185 * 304.99371 * 4 2 1 31 31 H 1.08996 * 109.46940 * 65.00117 * 4 2 1 32 32 H 1.09006 * 109.46390 * 94.23365 * 6 5 4 33 33 H 1.08998 * 109.47326 * 214.22920 * 6 5 4 34 34 H 1.08998 * 109.47168 * 334.23900 * 6 5 4 35 35 H 0.96993 * 119.99620 * 179.97438 * 10 9 7 36 36 H 0.96994 * 119.99892 * 95.00703 * 15 2 1 37 37 H 1.07999 * 127.25451 * 359.97438 * 19 18 16 38 38 H 1.08004 * 126.38965 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47034 * 59.99519 * 23 22 21 40 40 H 1.09000 * 109.47440 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47055 * 299.99841 * 23 22 21 42 42 H 1.09003 * 109.46942 * 60.00860 * 24 22 21 43 43 H 1.09000 * 109.46963 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.47344 * 300.00655 * 24 22 21 45 45 H 1.09001 * 109.47101 * 60.00429 * 25 22 21 46 46 H 1.09000 * 109.47228 * 179.97438 * 25 22 21 47 47 H 1.08995 * 109.47179 * 299.99875 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3343 0.2343 -1.7613 7 6 4.0851 -1.9156 -0.6023 8 1 3.5326 -2.8385 -0.5052 9 6 5.3881 -1.8338 -0.1309 10 7 5.9802 -0.6623 -0.0329 11 14 6.3014 -3.3862 0.3643 12 1 5.4213 -4.5647 0.1603 13 1 7.5217 -3.5300 -0.4697 14 1 6.6876 -3.2981 1.7955 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8574 1.1612 2.4119 18 6 2.6389 -0.7147 3.5633 19 6 2.8256 -0.1473 4.8460 20 6 3.2869 -1.1546 5.6237 21 7 3.3691 -2.2552 4.8455 22 6 3.8315 -3.5692 5.2989 23 6 2.7404 -4.2302 6.1437 24 6 4.1392 -4.4483 4.0850 25 6 5.0975 -3.4017 6.1414 26 7 2.9892 -1.9826 3.6489 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6055 -1.7197 -1.2952 31 1 1.7517 -0.1582 -2.1369 32 1 4.6022 0.9458 -0.9801 33 1 5.2404 -0.2024 -2.1812 34 1 3.7810 0.7488 -2.5469 35 1 6.8905 -0.6052 0.2969 36 1 2.2491 -1.6317 1.1526 37 1 2.6400 0.8746 5.1421 38 1 3.5417 -1.0902 6.6713 39 1 1.8384 -4.3496 5.5434 40 1 3.0842 -5.2081 6.4807 41 1 2.5211 -3.6040 7.0084 42 1 4.9166 -3.9775 3.4832 43 1 4.4828 -5.4262 4.4224 44 1 3.2372 -4.5677 3.4847 45 1 4.8782 -2.7755 7.0062 46 1 5.4413 -4.3794 6.4791 47 1 5.8748 -2.9309 5.5396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:28 Heat of formation + Delta-G solvation = 61.297243 kcal Electronic energy + Delta-G solvation = -27303.977533 eV Core-core repulsion = 23717.497363 eV Total energy + Delta-G solvation = -3586.480170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.36475 -38.75764 -36.82089 -36.07522 -33.83366 -31.43709 -30.58762 -30.52723 -29.42033 -27.67824 -27.34184 -26.08673 -25.51410 -23.95691 -21.88965 -21.32928 -20.01291 -19.67421 -19.06339 -17.40670 -16.64277 -16.00912 -15.77051 -15.32731 -14.78165 -14.36871 -14.22283 -13.77174 -13.70639 -13.57204 -13.36221 -12.99848 -12.80953 -12.73093 -12.51922 -12.45294 -12.13516 -12.06052 -11.93410 -11.74884 -11.36574 -11.30879 -11.26386 -11.13891 -10.77436 -10.64338 -10.37896 -10.28289 -10.16304 -9.95865 -9.74962 -9.28612 -8.83860 -8.67831 -8.49013 -8.07310 -6.69187 -5.65858 -3.10507 2.16119 2.55497 2.64768 3.35676 3.42613 3.44619 4.00282 4.26031 4.30866 4.53048 4.57299 4.67079 4.95362 5.07854 5.22321 5.33450 5.40762 5.44171 5.53680 5.57454 5.60506 5.70938 5.73258 5.75220 5.79516 5.97545 5.98706 6.07891 6.09781 6.15855 6.26304 6.28749 6.35842 6.54378 6.62462 6.80789 6.84500 6.99399 7.13988 7.43971 7.46106 7.79664 7.87563 8.26827 8.44601 8.59590 9.11803 9.28986 9.93026 10.42466 11.38899 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.006469 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.456585 B = 4327.452770 C = 5846.349488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.250 4.250 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.293 1.293 14 H -0.292 1.292 15 N -0.673 5.673 16 C 0.605 3.395 17 O -0.559 6.559 18 C -0.006 4.006 19 C -0.183 4.183 20 C -0.029 4.029 21 N -0.277 5.277 22 C 0.169 3.831 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.159 4.159 26 N -0.244 5.244 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.044 0.956 34 H -0.004 1.004 35 H 0.249 0.751 36 H 0.409 0.591 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -6.474 11.502 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.189 4.189 10 N -0.544 5.544 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.220 1.220 14 H -0.219 1.219 15 N -0.322 5.322 16 C 0.389 3.611 17 O -0.437 6.437 18 C -0.166 4.166 19 C -0.212 4.212 20 C -0.171 4.171 21 N -0.066 5.066 22 C 0.088 3.912 23 C -0.214 4.214 24 C -0.209 4.209 25 C -0.218 4.218 26 N -0.079 5.079 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.173 0.827 38 H 0.189 0.811 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.000 -6.717 10.934 14.165 hybrid contribution 0.904 -0.382 1.010 1.408 sum -5.096 -7.099 11.944 14.800 Atomic orbital electron populations 1.22159 0.96915 1.01231 1.01519 1.21856 0.91807 0.98437 0.87006 0.90476 1.21189 0.86007 0.97868 0.93556 1.43919 0.98900 1.22673 1.66572 1.20788 0.92916 0.90474 0.93825 1.19078 0.96819 0.89394 1.32650 0.91606 1.24930 0.98707 0.95939 0.99329 1.70087 1.13090 1.21435 1.49742 0.86334 0.79978 0.83419 0.77720 1.20211 1.22000 1.21931 1.45570 1.64014 1.14622 1.07981 1.16812 0.77116 0.85437 0.81743 1.90694 1.52707 1.15199 1.85116 1.22068 1.07757 0.90805 0.96006 1.21696 1.06945 1.00320 0.92203 1.22586 1.08274 0.87196 0.99015 1.45737 1.45744 1.09356 1.05784 1.20948 0.94792 0.79378 0.96121 1.22225 0.98370 1.01083 0.99737 1.22013 1.04265 0.98409 0.96221 1.22232 0.96160 1.03548 0.99811 1.73581 1.14548 1.17383 1.02358 0.92900 0.92272 0.93063 0.93387 0.92941 0.95423 0.93759 0.98584 0.94061 0.75398 0.82654 0.81062 0.91388 0.90260 0.91734 0.90913 0.90922 0.90455 0.91490 0.90009 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 37.15 0.35 -2.24 16 2 C 0.12 2.35 2.88 -67.93 -0.20 2.16 16 3 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 4 C 0.14 2.88 5.36 -4.04 -0.02 2.86 16 5 N -0.60 -14.84 2.82 -181.11 -0.51 -15.35 16 6 C 0.16 4.15 9.01 59.85 0.54 4.69 16 7 C -0.25 -6.62 8.02 -15.06 -0.12 -6.74 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.01 0.27 5.12 -17.43 -0.09 0.18 16 10 N -0.90 -26.44 10.60 55.49 0.59 -25.85 16 11 Si 0.89 21.76 29.57 -169.99 -5.03 16.73 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 N -0.67 -14.56 4.48 -54.79 -0.25 -14.80 16 16 C 0.60 13.74 7.79 -12.39 -0.10 13.64 16 17 O -0.56 -13.80 16.59 5.30 0.09 -13.71 16 18 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 19 C -0.18 -3.20 10.81 -39.36 -0.43 -3.62 16 20 C -0.03 -0.41 10.52 -17.16 -0.18 -0.59 16 21 N -0.28 -4.29 3.16 -48.62 -0.15 -4.45 16 22 C 0.17 2.01 1.21 -131.82 -0.16 1.85 16 23 C -0.16 -1.40 8.70 37.16 0.32 -1.07 16 24 C -0.15 -2.01 8.00 37.16 0.30 -1.71 16 25 C -0.16 -1.55 8.27 37.16 0.31 -1.25 16 26 N -0.24 -4.70 10.61 33.42 0.35 -4.34 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 31 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 33 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 34 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.41 9.01 7.12 -40.82 -0.29 8.72 16 37 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.17 1.72 7.47 -52.48 -0.39 1.32 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 45 H 0.07 0.54 7.27 -51.93 -0.38 0.16 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -33.29 382.88 -7.25 -40.54 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.06 Total: 8.00 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.06 Total: 7.45 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: 0.03 Total: -64.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.29 -7.25 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.841 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds