Wall clock time and date at job start Tue Mar 31 2020 10:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47355 * 2 1 4 4 C 1.53002 * 109.46735 * 119.99767 * 2 1 3 5 5 N 1.46503 * 109.46940 * 175.00312 * 4 2 1 6 6 C 1.46503 * 119.99636 * 269.99588 * 5 4 2 7 7 C 1.36931 * 120.00232 * 89.99956 * 5 4 2 8 8 H 1.08002 * 120.00081 * 23.62650 * 7 5 4 9 9 C 1.38810 * 120.00105 * 203.62142 * 7 5 4 10 10 N 1.31623 * 120.00000 * 11.30249 * 9 7 5 11 11 Si 1.86803 * 120.00244 * 191.29650 * 9 7 5 12 12 H 1.48505 * 109.46708 * 60.00283 * 11 9 7 13 13 H 1.48498 * 109.47316 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47321 * 300.00669 * 11 9 7 15 15 N 1.46491 * 109.47389 * 239.99851 * 2 1 3 16 16 C 1.34775 * 120.00153 * 85.00099 * 15 2 1 17 17 O 1.21569 * 120.00047 * 0.27945 * 16 15 2 18 18 C 1.47712 * 120.00141 * 180.02562 * 16 15 2 19 19 C 1.41505 * 126.51761 * 179.71392 * 18 16 15 20 20 C 1.35365 * 105.49936 * 179.87624 * 19 18 16 21 21 N 1.35035 * 107.23314 * 0.38266 * 20 19 18 22 22 C 1.46503 * 124.88705 * 179.76940 * 21 20 19 23 23 C 1.53000 * 109.46976 * 74.99488 * 22 21 20 24 24 C 1.52992 * 109.47015 * 194.99698 * 22 21 20 25 25 C 1.52995 * 109.46954 * 314.99790 * 22 21 20 26 26 N 1.28471 * 110.22534 * 359.74501 * 21 20 19 27 27 H 1.09002 * 109.47534 * 300.00537 * 1 2 3 28 28 H 1.09004 * 109.46982 * 60.00111 * 1 2 3 29 29 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47449 * 295.00302 * 4 2 1 31 31 H 1.08993 * 109.47352 * 55.00003 * 4 2 1 32 32 H 1.09006 * 109.46851 * 94.55299 * 6 5 4 33 33 H 1.09001 * 109.47282 * 214.54762 * 6 5 4 34 34 H 1.09004 * 109.47512 * 334.55510 * 6 5 4 35 35 H 0.96996 * 120.00317 * 179.97438 * 10 9 7 36 36 H 0.97006 * 120.00054 * 265.00340 * 15 2 1 37 37 H 1.07995 * 127.24914 * 0.02562 * 19 18 16 38 38 H 1.08005 * 126.38142 * 180.10709 * 20 19 18 39 39 H 1.09001 * 109.47015 * 60.00318 * 23 22 21 40 40 H 1.09002 * 109.46728 * 179.97438 * 23 22 21 41 41 H 1.08993 * 109.47430 * 299.99916 * 23 22 21 42 42 H 1.09007 * 109.47491 * 59.99959 * 24 22 21 43 43 H 1.09002 * 109.47327 * 179.97438 * 24 22 21 44 44 H 1.09001 * 109.47317 * 299.99890 * 24 22 21 45 45 H 1.09002 * 109.47329 * 59.99850 * 25 22 21 46 46 H 1.08995 * 109.47148 * 180.02562 * 25 22 21 47 47 H 1.09003 * 109.47469 * 300.00126 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1257 -1.9920 0.5615 7 6 4.2797 0.1649 1.7241 8 1 3.8833 0.8070 2.4968 9 6 5.5798 0.3443 1.2719 10 7 5.9918 -0.2795 0.1886 11 14 6.7446 1.4712 2.2008 12 1 6.9134 0.9726 3.5894 13 1 8.0632 1.4917 1.5179 14 1 6.1831 2.8456 2.2331 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3570 17 8 1.8628 1.1625 -2.4105 18 6 2.6390 -0.7148 -3.5632 19 6 2.8209 -0.1485 -4.8472 20 6 3.2864 -1.1549 -5.6237 21 7 3.3669 -2.2559 -4.8460 22 6 3.8227 -3.5717 -5.3011 23 6 5.3441 -3.5566 -5.4625 24 6 3.4297 -4.6320 -4.2705 25 6 3.1705 -3.9005 -6.6454 26 7 2.9866 -1.9832 -3.6495 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.7515 -0.1583 2.1371 31 1 1.6053 -1.7197 1.2953 32 1 4.3535 -1.7642 -0.4799 33 1 5.0470 -2.2390 1.0892 34 1 3.4424 -2.8400 0.6068 35 1 6.9001 -0.1539 -0.1276 36 1 2.2490 -1.6318 -1.1525 37 1 2.6309 0.8722 -5.1444 38 1 3.5413 -1.0904 -6.6713 39 1 5.8088 -3.3223 -4.5048 40 1 5.6833 -4.5358 -5.8006 41 1 5.6241 -2.8012 -6.1967 42 1 2.3457 -4.6428 -4.1555 43 1 3.7684 -5.6111 -4.6093 44 1 3.8944 -4.3977 -3.3128 45 1 3.4505 -3.1451 -7.3796 46 1 3.5092 -4.8797 -6.9837 47 1 2.0866 -3.9112 -6.5304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:31 Heat of formation + Delta-G solvation = 61.605484 kcal Electronic energy + Delta-G solvation = -26884.135581 eV Core-core repulsion = 23297.668778 eV Total energy + Delta-G solvation = -3586.466804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.46741 -38.85418 -36.90661 -36.10705 -33.86744 -31.43277 -30.68440 -30.57226 -29.56350 -27.72844 -27.46791 -26.05912 -25.51392 -24.04377 -21.94786 -21.31571 -20.06294 -19.82810 -19.16016 -17.44807 -16.67557 -16.18495 -15.86513 -15.29303 -14.75246 -14.44154 -14.31540 -13.84910 -13.72675 -13.58375 -13.39087 -13.22804 -12.79941 -12.69561 -12.63635 -12.50001 -12.23905 -12.03801 -12.01026 -11.80272 -11.40070 -11.34159 -11.32625 -10.97154 -10.74944 -10.70520 -10.50688 -10.42944 -10.10238 -9.89387 -9.76261 -9.36834 -8.93725 -8.76686 -8.48488 -8.17481 -6.63643 -5.62734 -3.09114 2.04730 2.47276 2.54544 3.45686 3.50252 3.51068 3.89911 4.15581 4.21702 4.47655 4.57904 4.58694 4.88041 4.98278 5.14397 5.26216 5.35892 5.43480 5.46455 5.46937 5.57056 5.59684 5.64756 5.68457 5.80635 5.93760 5.94831 6.01743 6.06716 6.10413 6.12033 6.21625 6.36441 6.57948 6.64405 6.72447 6.77919 7.00417 7.04387 7.34344 7.43328 7.81728 7.89238 8.13985 8.43699 8.48839 9.00231 9.32519 9.95317 10.44202 11.41844 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.004638 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.968562 B = 6035.753208 C = 6876.875918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.283 1.283 15 N -0.684 5.684 16 C 0.606 3.394 17 O -0.549 6.549 18 C -0.006 4.006 19 C -0.182 4.182 20 C -0.026 4.026 21 N -0.276 5.276 22 C 0.169 3.831 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.157 4.157 26 N -0.251 5.251 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.040 0.960 34 H -0.007 1.007 35 H 0.250 0.750 36 H 0.401 0.599 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -10.293 -13.745 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.210 1.210 15 N -0.332 5.332 16 C 0.390 3.610 17 O -0.426 6.426 18 C -0.167 4.167 19 C -0.210 4.210 20 C -0.169 4.169 21 N -0.066 5.066 22 C 0.088 3.912 23 C -0.219 4.219 24 C -0.205 4.205 25 C -0.216 4.216 26 N -0.086 5.086 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.060 0.940 36 H 0.236 0.764 37 H 0.174 0.826 38 H 0.190 0.810 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.307 -10.570 -13.227 18.068 hybrid contribution 0.980 1.059 -0.256 1.466 sum -5.326 -9.511 -13.483 17.338 Atomic orbital electron populations 1.22157 0.96917 1.01058 1.01649 1.21898 0.91658 0.99229 0.86392 0.89570 1.21190 0.85873 0.97159 0.94271 1.43873 0.99021 1.20872 1.68124 1.20838 0.94281 0.84973 0.98070 1.19119 0.94573 1.10677 1.14228 0.91525 1.25021 0.98906 0.99044 0.96304 1.70053 1.17084 1.45569 1.21952 0.86373 0.80367 0.80884 0.79112 1.21183 1.21796 1.20952 1.45623 1.65028 1.13962 1.08637 1.16801 0.77112 0.85520 0.81603 1.90719 1.52031 1.14929 1.84882 1.22080 1.07725 0.90792 0.96056 1.21720 1.06682 1.00471 0.92128 1.22596 1.08077 0.87136 0.99063 1.45729 1.45716 1.09340 1.05791 1.20960 0.95297 0.79360 0.95616 1.22258 0.92595 1.03181 1.03854 1.21961 1.02919 0.96442 0.99180 1.22219 1.01634 1.02990 0.94708 1.73497 1.15088 1.17276 1.02705 0.92102 0.92938 0.93242 0.92310 0.94096 0.94666 0.94135 0.98859 0.93978 0.76441 0.82564 0.80959 0.90865 0.90246 0.91700 0.91518 0.90848 0.90196 0.91462 0.89969 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 37.16 0.35 -2.24 16 2 C 0.12 2.35 2.88 -67.94 -0.20 2.15 16 3 H 0.09 2.07 7.57 -51.93 -0.39 1.68 16 4 C 0.14 2.95 5.33 -4.04 -0.02 2.92 16 5 N -0.60 -15.04 2.78 -181.11 -0.50 -15.54 16 6 C 0.16 4.01 7.61 59.85 0.46 4.47 16 7 C -0.26 -7.19 9.66 -15.06 -0.15 -7.33 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -26.92 10.66 55.49 0.59 -26.33 16 11 Si 0.90 22.67 29.57 -169.99 -5.03 17.64 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 N -0.68 -14.17 4.41 -54.80 -0.24 -14.41 16 16 C 0.61 13.35 7.79 -12.39 -0.10 13.25 16 17 O -0.55 -13.49 16.59 5.30 0.09 -13.41 16 18 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 19 C -0.18 -3.01 10.81 -39.36 -0.43 -3.43 16 20 C -0.03 -0.35 10.52 -17.17 -0.18 -0.53 16 21 N -0.28 -3.84 3.16 -48.62 -0.15 -3.99 16 22 C 0.17 1.69 1.21 -131.82 -0.16 1.53 16 23 C -0.16 -1.48 8.70 37.16 0.32 -1.16 16 24 C -0.15 -1.46 8.01 37.15 0.30 -1.16 16 25 C -0.16 -1.09 8.27 37.15 0.31 -0.78 16 26 N -0.25 -4.37 10.61 33.42 0.35 -4.01 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 31 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.04 0.94 6.90 -51.93 -0.36 0.58 16 33 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 34 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.40 8.03 6.90 -40.82 -0.28 7.75 16 37 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.17 1.55 7.47 -52.48 -0.39 1.16 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16 45 H 0.07 0.41 7.27 -51.93 -0.38 0.03 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -34.46 382.40 -7.32 -41.78 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.03 Total: 5.44 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.17 Total: 7.06 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.05 Total: -64.29 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.46 -7.32 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.387 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds