Wall clock time and date at job start Tue Mar 31 2020 09:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99867 * 2 1 4 4 C 1.50702 * 109.47110 * 66.04444 * 3 2 1 5 5 H 1.07996 * 120.00095 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00430 * 359.72081 * 6 4 3 8 8 Si 1.86805 * 119.99657 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46927 * 179.72124 * 8 6 4 10 10 H 1.48504 * 109.46980 * 299.72335 * 8 6 4 11 11 H 1.48499 * 109.47004 * 59.72252 * 8 6 4 12 12 C 1.46892 * 111.00182 * 236.04352 * 2 1 3 13 13 C 1.53004 * 109.47307 * 199.76500 * 12 2 1 14 14 H 1.08989 * 109.46901 * 302.16171 * 13 12 2 15 15 O 1.42898 * 109.46695 * 62.16174 * 13 12 2 16 16 C 1.53000 * 109.47177 * 182.15770 * 13 12 2 17 17 N 1.46901 * 109.47074 * 180.02562 * 16 13 12 18 18 C 1.46904 * 110.99655 * 180.02562 * 17 16 13 19 19 H 1.08993 * 109.42743 * 325.11128 * 18 17 16 20 20 C 1.53023 * 109.41790 * 205.28184 * 18 17 16 21 21 C 1.53396 * 109.71293 * 168.19735 * 20 18 17 22 22 C 1.50884 * 108.18869 * 50.57735 * 21 20 18 23 23 C 1.34565 * 128.32668 * 163.27782 * 22 21 20 24 24 N 1.35204 * 107.61786 * 180.16173 * 23 22 21 25 25 H 0.96998 * 126.00455 * 179.97438 * 24 23 22 26 26 N 1.40312 * 107.98883 * 359.96153 * 24 23 22 27 27 C 1.30129 * 108.12533 * 359.96823 * 26 24 23 28 28 C 1.50947 * 128.28576 * 180.10257 * 27 26 24 29 29 H 1.08993 * 109.47088 * 54.96720 * 1 2 3 30 30 H 1.09001 * 109.46789 * 174.96707 * 1 2 3 31 31 H 1.08996 * 109.47176 * 294.96148 * 1 2 3 32 32 H 1.09002 * 109.47080 * 306.04353 * 3 2 1 33 33 H 1.08997 * 109.47169 * 186.04372 * 3 2 1 34 34 H 0.96998 * 119.99378 * 0.28280 * 7 6 4 35 35 H 1.09000 * 109.47324 * 319.76812 * 12 2 1 36 36 H 1.09000 * 109.47109 * 79.76251 * 12 2 1 37 37 H 0.96700 * 114.00243 * 60.00401 * 15 13 12 38 38 H 1.09001 * 109.47127 * 300.00209 * 16 13 12 39 39 H 1.09007 * 109.46728 * 60.00039 * 16 13 12 40 40 H 1.00899 * 110.99255 * 303.95414 * 17 16 13 41 41 H 1.08991 * 109.43488 * 288.28509 * 20 18 17 42 42 H 1.09003 * 109.42945 * 48.13723 * 20 18 17 43 43 H 1.09001 * 109.74329 * 290.88851 * 21 20 18 44 44 H 1.09004 * 109.70072 * 170.23577 * 21 20 18 45 45 H 1.07998 * 126.19709 * 0.17938 * 23 22 21 46 46 H 1.09001 * 109.71741 * 43.61386 * 28 27 26 47 47 H 1.09004 * 109.75144 * 282.99175 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0267 3.3495 1.5284 7 7 2.7162 4.0003 0.6170 8 14 1.5829 4.1869 3.1382 9 1 2.1202 5.5712 3.1406 10 1 0.1056 4.2290 3.2834 11 1 2.1700 3.4260 4.2702 12 6 1.9955 -0.7660 -1.1375 13 6 3.4457 -1.1648 -0.8564 14 1 4.0400 -0.2695 -0.6747 15 8 3.4926 -2.0096 0.2952 16 6 4.0111 -1.9161 -2.0634 17 7 5.4032 -2.2995 -1.7933 18 6 5.9803 -3.0241 -2.9334 19 1 5.2093 -3.6355 -3.4022 20 6 7.1144 -3.9261 -2.4416 21 6 7.5244 -4.8964 -3.5568 22 6 7.7640 -4.0958 -4.8131 23 6 8.4199 -4.4682 -5.9275 24 7 8.3868 -3.4267 -6.7891 25 1 8.7806 -3.4071 -7.6753 26 7 7.6825 -2.3794 -6.1760 27 6 7.3090 -2.7793 -4.9954 28 6 6.5244 -2.0177 -3.9548 29 1 -0.3633 0.5899 -0.8414 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.9469 3.5654 -0.2188 35 1 1.3933 -1.6631 -1.2813 36 1 1.9552 -0.1532 -2.0380 37 1 2.9844 -2.8272 0.2042 38 1 3.4167 -2.8115 -2.2451 39 1 3.9752 -1.2717 -2.9418 40 1 5.9613 -1.4925 -1.5581 41 1 7.9705 -3.3124 -2.1618 42 1 6.7766 -4.4930 -1.5741 43 1 6.7266 -5.6192 -3.7278 44 1 8.4388 -5.4174 -3.2727 45 1 8.8879 -5.4256 -6.1023 46 1 5.6962 -1.4923 -4.4304 47 1 7.1754 -1.3009 -3.4541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562995607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:52 Heat of formation + Delta-G solvation = 19.341228 kcal Electronic energy + Delta-G solvation = -25327.566415 eV Core-core repulsion = 21739.266896 eV Total energy + Delta-G solvation = -3588.299519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72403 -38.54371 -37.36202 -35.55835 -33.82835 -32.65298 -32.34029 -30.45516 -28.93571 -28.39242 -26.89249 -25.59738 -23.94815 -23.02242 -21.68442 -21.44232 -21.24836 -20.25556 -19.21767 -17.86464 -16.82191 -16.33102 -15.74657 -15.45883 -15.39305 -14.83516 -14.56637 -14.35995 -14.18174 -13.92138 -13.70928 -13.59725 -13.31629 -13.14227 -13.10649 -12.61778 -12.18094 -11.98860 -11.74879 -11.56243 -11.39014 -11.27336 -11.16868 -11.02129 -10.90503 -10.81597 -10.60276 -10.54688 -10.12757 -9.98816 -9.66883 -9.44879 -8.72010 -8.60165 -8.42936 -8.32089 -7.26172 -6.31937 -3.99630 1.60746 2.45345 2.55537 3.48365 3.51943 3.69750 3.89718 4.23543 4.44251 4.56701 4.62023 4.73784 4.89174 4.93186 4.98717 5.11290 5.23416 5.25657 5.31228 5.33785 5.41025 5.45449 5.53051 5.62104 5.64337 5.67494 5.71603 5.77100 5.94712 5.98531 6.03972 6.04964 6.11151 6.28511 6.37552 6.45245 6.66883 6.94927 6.98775 7.02043 7.11056 7.32573 7.39867 7.82097 8.01713 8.23844 8.36856 8.64509 8.92378 9.70359 11.07296 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.566179 B =11479.845623 C =11908.461342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.524 5.524 3 C 0.183 3.817 4 C -0.584 4.584 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.916 5.916 8 Si 1.072 2.928 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.024 3.976 13 C 0.119 3.881 14 H 0.097 0.903 15 O -0.530 6.530 16 C 0.026 3.974 17 N -0.670 5.670 18 C 0.094 3.906 19 H 0.079 0.921 20 C -0.106 4.106 21 C -0.040 4.040 22 C -0.235 4.235 23 C 0.057 3.943 24 N -0.487 5.487 25 H 0.438 0.562 26 N -0.290 5.290 27 C 0.090 3.910 28 C -0.072 4.072 29 H 0.010 0.990 30 H 0.044 0.956 31 H 0.073 0.927 32 H -0.023 1.023 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.361 0.639 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.345 0.655 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.175 0.825 46 H 0.080 0.920 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -20.408 -13.568 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.248 5.248 3 C 0.057 3.943 4 C -0.622 4.622 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.553 5.553 8 Si 0.900 3.100 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.213 1.213 12 C -0.106 4.106 13 C 0.059 3.941 14 H 0.115 0.885 15 O -0.332 6.332 16 C -0.104 4.104 17 N -0.299 5.299 18 C -0.017 4.017 19 H 0.098 0.902 20 C -0.144 4.144 21 C -0.079 4.079 22 C -0.246 4.246 23 C -0.088 4.088 24 N -0.195 5.195 25 H 0.282 0.718 26 N -0.112 5.112 27 C -0.080 4.080 28 C -0.113 4.113 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.092 0.908 32 H -0.005 1.005 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.206 0.794 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.164 0.836 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.193 0.807 46 H 0.098 0.902 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.245 -18.342 -12.527 24.460 hybrid contribution -0.350 -1.358 -2.813 3.143 sum 9.896 -19.700 -15.340 26.857 Atomic orbital electron populations 1.22193 0.88588 0.98688 1.01188 1.61939 1.06670 1.16970 1.39208 1.19881 0.94725 0.82835 0.96823 1.21960 1.38586 0.99506 1.02164 0.92493 1.25853 0.94481 0.94778 1.03962 1.70806 1.36586 1.39972 1.07909 0.83494 0.75970 0.76017 0.74474 1.20901 1.21553 1.21288 1.22734 0.96360 0.98151 0.93388 1.21832 0.94779 0.93027 0.84488 0.88522 1.86681 1.74208 1.34185 1.38167 1.22765 0.90164 0.99613 0.97849 1.60549 1.02553 1.30373 1.36439 1.21600 0.96674 0.94425 0.88976 0.90248 1.21537 0.97652 0.97370 0.97829 1.20012 1.01112 0.96318 0.90420 1.20199 1.09180 0.96608 0.98633 1.22077 1.01486 0.94201 0.91078 1.46341 1.46237 1.10306 1.16657 0.71831 1.77054 1.14361 1.10516 1.09304 1.22255 0.98153 0.94349 0.93211 1.20994 0.98556 0.97882 0.93832 0.97162 0.93729 0.90803 1.00537 0.96148 0.92493 0.91944 0.95306 0.79379 0.90898 0.94582 0.83584 0.91820 0.90168 0.91235 0.91044 0.80750 0.90165 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.31 60.07 0.56 1.40 16 2 N -0.52 -11.52 4.59 -244.37 -1.12 -12.64 16 3 C 0.18 4.82 3.86 -4.97 -0.02 4.80 16 4 C -0.58 -16.97 8.58 -34.44 -0.30 -17.27 16 5 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 6 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 7 N -0.92 -28.36 13.65 55.43 0.76 -27.60 16 8 Si 1.07 25.90 29.90 -169.99 -5.08 20.81 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.02 0.41 4.65 -3.83 -0.02 0.39 16 13 C 0.12 1.91 3.25 -26.73 -0.09 1.82 16 14 H 0.10 1.83 6.73 -51.93 -0.35 1.49 16 15 O -0.53 -9.02 13.11 -35.23 -0.46 -9.48 16 16 C 0.03 0.32 5.14 -3.82 -0.02 0.30 16 17 N -0.67 -7.67 6.11 -106.51 -0.65 -8.32 16 18 C 0.09 0.92 2.41 -67.51 -0.16 0.76 16 19 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 20 C -0.11 -0.93 5.47 -26.51 -0.15 -1.07 16 21 C -0.04 -0.30 6.28 -27.59 -0.17 -0.47 16 22 C -0.23 -2.17 5.89 -104.99 -0.62 -2.79 16 23 C 0.06 0.42 11.95 -17.37 -0.21 0.21 16 24 N -0.49 -4.06 7.37 30.35 0.22 -3.83 16 25 H 0.44 2.18 8.96 -182.44 -1.64 0.54 16 26 N -0.29 -3.51 12.68 33.75 0.43 -3.08 16 27 C 0.09 1.01 7.10 -82.35 -0.58 0.43 16 28 C -0.07 -0.75 5.57 -27.57 -0.15 -0.90 16 29 H 0.01 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.07 1.58 7.01 -51.93 -0.36 1.21 16 32 H -0.02 -0.64 7.94 -51.93 -0.41 -1.05 16 33 H 0.02 0.57 6.47 -51.93 -0.34 0.23 16 34 H 0.26 8.16 7.22 -40.82 -0.29 7.87 16 35 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 37 H 0.36 4.78 9.05 45.56 0.41 5.20 16 38 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 39 H 0.04 0.43 7.66 -51.92 -0.40 0.04 16 40 H 0.35 4.11 8.36 -39.29 -0.33 3.78 16 41 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.08 0.88 7.74 -51.93 -0.40 0.47 16 47 H 0.09 0.90 7.97 -51.93 -0.41 0.49 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -35.22 373.92 -10.56 -45.79 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.27 Total: 4.86 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.02 Total: -12.13 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.36 Total: -55.48 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.46 Total: -9.48 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.22 -10.56 -45.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562995607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.127 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds