Wall clock time and date at job start Tue Mar 31 2020 09:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99867 * 2 1 4 4 C 1.50702 * 109.47110 * 66.04444 * 3 2 1 5 5 H 1.07996 * 120.00095 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00430 * 359.72081 * 6 4 3 8 8 Si 1.86805 * 119.99657 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46927 * 179.72124 * 8 6 4 10 10 H 1.48504 * 109.46980 * 299.72335 * 8 6 4 11 11 H 1.48499 * 109.47004 * 59.72252 * 8 6 4 12 12 C 1.46892 * 111.00182 * 236.04352 * 2 1 3 13 13 C 1.53004 * 109.47307 * 199.76500 * 12 2 1 14 14 H 1.08989 * 109.46901 * 302.16171 * 13 12 2 15 15 O 1.42898 * 109.46695 * 62.16174 * 13 12 2 16 16 C 1.53000 * 109.47177 * 182.15770 * 13 12 2 17 17 N 1.46901 * 109.47074 * 180.02562 * 16 13 12 18 18 C 1.46904 * 110.99655 * 180.02562 * 17 16 13 19 19 H 1.08993 * 109.42743 * 325.11128 * 18 17 16 20 20 C 1.53023 * 109.41790 * 205.28184 * 18 17 16 21 21 C 1.53396 * 109.71293 * 168.19735 * 20 18 17 22 22 C 1.50884 * 108.18869 * 50.57735 * 21 20 18 23 23 C 1.34565 * 128.32668 * 163.27782 * 22 21 20 24 24 N 1.35204 * 107.61786 * 180.16173 * 23 22 21 25 25 H 0.96998 * 126.00455 * 179.97438 * 24 23 22 26 26 N 1.40312 * 107.98883 * 359.96153 * 24 23 22 27 27 C 1.30129 * 108.12533 * 359.96823 * 26 24 23 28 28 C 1.50947 * 128.28576 * 180.10257 * 27 26 24 29 29 H 1.08993 * 109.47088 * 54.96720 * 1 2 3 30 30 H 1.09001 * 109.46789 * 174.96707 * 1 2 3 31 31 H 1.08996 * 109.47176 * 294.96148 * 1 2 3 32 32 H 1.09002 * 109.47080 * 306.04353 * 3 2 1 33 33 H 1.08997 * 109.47169 * 186.04372 * 3 2 1 34 34 H 0.96998 * 119.99378 * 0.28280 * 7 6 4 35 35 H 1.09000 * 109.47324 * 319.76812 * 12 2 1 36 36 H 1.09000 * 109.47109 * 79.76251 * 12 2 1 37 37 H 0.96700 * 114.00243 * 60.00401 * 15 13 12 38 38 H 1.09001 * 109.47127 * 300.00209 * 16 13 12 39 39 H 1.09007 * 109.46728 * 60.00039 * 16 13 12 40 40 H 1.00899 * 110.99255 * 303.95414 * 17 16 13 41 41 H 1.08991 * 109.43488 * 288.28509 * 20 18 17 42 42 H 1.09003 * 109.42945 * 48.13723 * 20 18 17 43 43 H 1.09001 * 109.74329 * 290.88851 * 21 20 18 44 44 H 1.09004 * 109.70072 * 170.23577 * 21 20 18 45 45 H 1.07998 * 126.19709 * 0.17938 * 23 22 21 46 46 H 1.09001 * 109.71741 * 43.61386 * 28 27 26 47 47 H 1.09004 * 109.75144 * 282.99175 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0267 3.3495 1.5284 7 7 2.7162 4.0003 0.6170 8 14 1.5829 4.1869 3.1382 9 1 2.1202 5.5712 3.1406 10 1 0.1056 4.2290 3.2834 11 1 2.1700 3.4260 4.2702 12 6 1.9955 -0.7660 -1.1375 13 6 3.4457 -1.1648 -0.8564 14 1 4.0400 -0.2695 -0.6747 15 8 3.4926 -2.0096 0.2952 16 6 4.0111 -1.9161 -2.0634 17 7 5.4032 -2.2995 -1.7933 18 6 5.9803 -3.0241 -2.9334 19 1 5.2093 -3.6355 -3.4022 20 6 7.1144 -3.9261 -2.4416 21 6 7.5244 -4.8964 -3.5568 22 6 7.7640 -4.0958 -4.8131 23 6 8.4199 -4.4682 -5.9275 24 7 8.3868 -3.4267 -6.7891 25 1 8.7806 -3.4071 -7.6753 26 7 7.6825 -2.3794 -6.1760 27 6 7.3090 -2.7793 -4.9954 28 6 6.5244 -2.0177 -3.9548 29 1 -0.3633 0.5899 -0.8414 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1082 34 1 2.9469 3.5654 -0.2188 35 1 1.3933 -1.6631 -1.2813 36 1 1.9552 -0.1532 -2.0380 37 1 2.9844 -2.8272 0.2042 38 1 3.4167 -2.8115 -2.2451 39 1 3.9752 -1.2717 -2.9418 40 1 5.9613 -1.4925 -1.5581 41 1 7.9705 -3.3124 -2.1618 42 1 6.7766 -4.4930 -1.5741 43 1 6.7266 -5.6192 -3.7278 44 1 8.4388 -5.4174 -3.2727 45 1 8.8879 -5.4256 -6.1023 46 1 5.6962 -1.4923 -4.4304 47 1 7.1754 -1.3009 -3.4541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562995607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:51 Heat of formation + Delta-G solvation = -9.908457 kcal Electronic energy + Delta-G solvation = -25328.834776 eV Core-core repulsion = 21739.266896 eV Total energy + Delta-G solvation = -3589.567881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40550 -39.73864 -38.51230 -37.08112 -34.82010 -34.71107 -33.05903 -31.51355 -29.88525 -29.31097 -28.89416 -26.89107 -25.37720 -24.36355 -22.92162 -22.38828 -21.97281 -21.77158 -19.96971 -18.97353 -18.49140 -17.59126 -16.90050 -16.55546 -16.28759 -16.21042 -15.83359 -15.59656 -15.57448 -15.16008 -14.98030 -14.65316 -14.57400 -14.17277 -13.96586 -13.77402 -13.60664 -13.24890 -13.09642 -12.92277 -12.77081 -12.66863 -12.52107 -12.33743 -12.27373 -12.09860 -11.92946 -11.70214 -11.62368 -11.27843 -10.87353 -10.61040 -10.56752 -10.41606 -9.40825 -9.31551 -9.05564 -8.67894 -6.37567 0.95511 1.52998 1.62285 1.74493 1.81594 1.98086 2.56350 2.87178 3.14777 3.34516 3.52912 3.70414 3.77739 3.91493 3.93880 4.11001 4.19607 4.29206 4.34312 4.40274 4.46504 4.48173 4.52222 4.53652 4.64818 4.65993 4.67135 4.74205 4.85348 4.86862 4.94729 4.99472 5.04588 5.11915 5.16122 5.31166 5.35751 5.42152 5.68062 5.79237 5.99219 6.07630 6.34242 6.39217 6.42938 6.48037 6.65260 6.70481 7.13073 7.42352 8.70876 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.566179 B =11479.845623 C =11908.461342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.537 5.537 3 C 0.196 3.804 4 C -0.597 4.597 5 H 0.053 0.947 6 C -0.040 4.040 7 N -0.938 5.938 8 Si 1.121 2.879 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.271 1.271 12 C 0.023 3.977 13 C 0.128 3.872 14 H 0.056 0.944 15 O -0.550 6.550 16 C 0.041 3.959 17 N -0.674 5.674 18 C 0.103 3.897 19 H 0.083 0.917 20 C -0.102 4.102 21 C -0.032 4.032 22 C -0.256 4.256 23 C 0.074 3.926 24 N -0.480 5.480 25 H 0.451 0.549 26 N -0.337 5.337 27 C 0.070 3.930 28 C -0.069 4.069 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.053 0.947 32 H -0.048 1.048 33 H -0.001 1.001 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.379 0.621 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.339 0.661 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.219 0.781 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -23.188 -13.624 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.261 5.261 3 C 0.069 3.931 4 C -0.635 4.635 5 H 0.071 0.929 6 C -0.237 4.237 7 N -0.576 5.576 8 Si 0.941 3.059 9 H -0.208 1.208 10 H -0.192 1.192 11 H -0.196 1.196 12 C -0.106 4.106 13 C 0.067 3.933 14 H 0.074 0.926 15 O -0.355 6.355 16 C -0.090 4.090 17 N -0.303 5.303 18 C -0.007 4.007 19 H 0.101 0.899 20 C -0.140 4.140 21 C -0.071 4.071 22 C -0.268 4.268 23 C -0.072 4.072 24 N -0.190 5.190 25 H 0.297 0.703 26 N -0.161 5.161 27 C -0.098 4.098 28 C -0.110 4.110 29 H 0.024 0.976 30 H 0.105 0.895 31 H 0.072 0.928 32 H -0.030 1.030 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.227 0.773 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.157 0.843 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.236 0.764 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.137 -21.164 -12.615 26.642 hybrid contribution -0.288 -0.584 -2.872 2.945 sum 9.849 -21.748 -15.487 28.457 Atomic orbital electron populations 1.22220 0.87248 1.01090 0.99953 1.61851 1.08022 1.14316 1.41862 1.19548 0.93387 0.85251 0.94881 1.22300 1.38228 0.99970 1.03005 0.92860 1.27440 0.93655 0.95960 1.06617 1.70936 1.38292 1.40288 1.08116 0.82895 0.77081 0.75072 0.70816 1.20843 1.19237 1.19637 1.22871 0.97535 0.98658 0.91489 1.21612 0.93624 0.92226 0.85808 0.92571 1.86634 1.74834 1.35244 1.38822 1.22573 0.90795 0.99935 0.95652 1.60605 1.02210 1.30108 1.37336 1.21571 0.97030 0.94032 0.88102 0.89876 1.21500 0.96742 0.97302 0.98463 1.20003 1.02268 0.95796 0.88985 1.20496 1.10108 0.96035 1.00119 1.22751 0.99698 0.94998 0.89765 1.46398 1.45436 1.09852 1.17351 0.70300 1.76960 1.16233 1.12657 1.10241 1.22405 0.98640 0.95573 0.93184 1.20921 0.98092 0.97936 0.94036 0.97560 0.89494 0.92815 1.03019 0.98266 0.93929 0.88184 0.95681 0.77315 0.88633 0.94619 0.84267 0.92739 0.90091 0.90211 0.89268 0.76421 0.91315 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.31 127.69 1.19 2.86 16 2 N -0.54 -23.60 4.59 -927.06 -4.25 -27.85 16 3 C 0.20 10.72 3.86 85.56 0.33 11.05 16 4 C -0.60 -35.45 8.58 25.60 0.22 -35.23 16 5 H 0.05 3.14 7.10 -2.91 -0.02 3.12 16 6 C -0.04 -2.38 5.46 84.66 0.46 -1.92 16 7 N -0.94 -59.75 13.65 21.45 0.29 -59.45 16 8 Si 1.12 52.03 29.90 68.60 2.05 54.09 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.02 0.79 4.65 86.31 0.40 1.19 16 13 C 0.13 4.11 3.25 30.60 0.10 4.21 16 14 H 0.06 2.27 6.73 -2.39 -0.02 2.25 16 15 O -0.55 -18.28 13.11 -148.98 -1.95 -20.23 16 16 C 0.04 0.96 5.14 86.30 0.44 1.40 16 17 N -0.67 -15.29 6.11 -490.87 -3.00 -18.29 16 18 C 0.10 1.95 2.41 45.05 0.11 2.06 16 19 H 0.08 1.53 7.75 -2.39 -0.02 1.52 16 20 C -0.10 -1.66 5.47 30.73 0.17 -1.49 16 21 C -0.03 -0.40 6.28 30.04 0.19 -0.21 16 22 C -0.26 -4.26 5.89 -20.10 -0.12 -4.38 16 23 C 0.07 0.88 11.95 83.33 1.00 1.87 16 24 N -0.48 -7.28 7.37 -57.89 -0.43 -7.71 16 25 H 0.45 3.78 8.96 -213.19 -1.91 1.87 16 26 N -0.34 -8.15 12.68 -47.14 -0.60 -8.75 16 27 C 0.07 1.57 7.10 43.44 0.31 1.88 16 28 C -0.07 -1.48 5.57 30.05 0.17 -1.32 16 29 H 0.01 0.23 8.08 -2.39 -0.02 0.21 16 30 H 0.09 2.62 7.85 -2.39 -0.02 2.60 16 31 H 0.05 2.27 7.01 -2.39 -0.02 2.25 16 32 H -0.05 -2.78 7.94 -2.39 -0.02 -2.80 16 33 H 0.00 -0.04 6.47 -2.39 -0.02 -0.05 16 34 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 35 H 0.10 2.64 7.75 -2.39 -0.02 2.62 16 36 H 0.02 0.87 8.00 -2.39 -0.02 0.86 16 37 H 0.38 9.22 9.05 -74.06 -0.67 8.55 16 38 H 0.10 1.85 8.05 -2.39 -0.02 1.84 16 39 H 0.04 0.85 7.66 -2.38 -0.02 0.84 16 40 H 0.34 8.42 8.36 -89.69 -0.75 7.67 16 41 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.07 1.59 7.74 -2.39 -0.02 1.57 16 47 H 0.08 1.77 7.97 -2.39 -0.02 1.75 16 Total: -1.00 -78.65 373.92 -5.16 -83.81 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -2.24 Total: 22.40 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.96 Total: -18.03 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -7.99 Total: -122.05 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.95 Total: -20.23 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.09 kcal Total: -78.65 -5.16 -83.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562995607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.906 kcal (2) G-P(sol) polarization free energy of solvation -78.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds