Wall clock time and date at job start Tue Mar 31 2020 09:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46978 * 2 1 4 4 C 1.36938 * 119.99954 * 275.91141 * 3 2 1 5 5 H 1.08000 * 119.99579 * 34.07478 * 4 3 2 6 6 C 1.38806 * 120.00074 * 214.08189 * 4 3 2 7 7 N 1.31617 * 120.00382 * 17.04685 * 6 4 3 8 8 Si 1.86807 * 119.99939 * 197.04882 * 6 4 3 9 9 H 1.48506 * 109.46830 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.47310 * 239.99690 * 8 6 4 12 12 C 1.46493 * 120.00185 * 95.91589 * 3 2 1 13 13 H 1.09002 * 109.47561 * 177.14259 * 12 3 2 14 14 C 1.53003 * 109.47452 * 57.14390 * 12 3 2 15 15 C 1.53000 * 109.46918 * 297.14496 * 12 3 2 16 16 N 1.46506 * 109.46925 * 304.99655 * 15 12 3 17 17 C 1.34778 * 119.99814 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99973 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.47377 * 180.02562 * 19 17 16 21 21 C 1.39861 * 126.04017 * 90.02225 * 20 19 17 22 22 N 1.30836 * 108.20438 * 179.97438 * 21 20 19 23 23 N 1.40089 * 108.20216 * 0.02562 * 22 21 20 24 24 C 1.46496 * 126.03569 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.47462 * 305.02445 * 24 23 22 26 26 C 1.34945 * 107.92551 * 359.75436 * 23 22 21 27 27 H 1.09002 * 109.47400 * 300.00126 * 1 2 3 28 28 H 1.08997 * 109.46813 * 60.00126 * 1 2 3 29 29 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47400 * 239.99874 * 2 1 3 31 31 H 1.09001 * 109.47468 * 119.99628 * 2 1 3 32 32 H 0.97002 * 120.00245 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47608 * 180.02562 * 14 12 3 34 34 H 1.09005 * 109.46798 * 299.99955 * 14 12 3 35 35 H 1.08997 * 109.46990 * 59.99794 * 14 12 3 36 36 H 1.08999 * 109.47408 * 65.00292 * 15 12 3 37 37 H 1.09008 * 109.47342 * 185.00395 * 15 12 3 38 38 H 0.96990 * 119.99726 * 0.02562 * 16 15 12 39 39 H 1.08999 * 109.47213 * 300.00238 * 19 17 16 40 40 H 1.09001 * 109.47339 * 59.99650 * 19 17 16 41 41 H 1.08004 * 125.90248 * 359.96414 * 21 20 19 42 42 H 1.09004 * 109.47458 * 65.02643 * 24 23 22 43 43 H 1.09004 * 109.47625 * 185.02323 * 24 23 22 44 44 H 1.08996 * 109.47032 * 179.97438 * 25 24 23 45 45 H 1.08995 * 109.47002 * 299.99921 * 25 24 23 46 46 H 1.08999 * 109.46777 * 60.00110 * 25 24 23 47 47 H 1.07999 * 126.12770 * 180.23360 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8925 -1.9761 6 6 3.1561 2.9878 -1.3517 7 7 4.1990 2.9694 -0.5490 8 14 3.0551 4.2527 -2.7226 9 1 1.7913 4.0629 -3.4791 10 1 3.0831 5.6181 -2.1394 11 1 4.2106 4.0823 -3.6396 12 6 2.3858 2.0283 1.2619 13 1 2.7713 3.0275 1.0592 14 6 3.4622 1.1995 1.9656 15 6 1.1519 2.1305 2.1608 16 7 0.0791 2.8212 1.4408 17 6 -1.1105 3.0275 2.0400 18 8 -1.2926 2.6416 3.1754 19 6 -2.2142 3.7374 1.2993 20 6 -3.4291 3.8393 2.1852 21 6 -3.7206 4.8869 3.0648 22 7 -4.8567 4.6198 3.6562 23 7 -5.3244 3.3916 3.1712 24 6 -6.5647 2.7227 3.5718 25 6 -6.5836 2.5509 5.0920 26 6 -4.4331 2.9358 2.2663 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.9150 3.6127 -0.6690 33 1 3.7353 1.6806 2.9048 34 1 3.0766 0.2003 2.1684 35 1 4.3412 1.1266 1.3252 36 1 0.8190 1.1297 2.4362 37 1 1.4038 2.6902 3.0616 38 1 0.2249 3.1300 0.5331 39 1 -1.8814 4.7380 1.0232 40 1 -2.4664 3.1772 0.3990 41 1 -3.1129 5.7646 3.2278 42 1 -7.4188 3.3259 3.2637 43 1 -6.6203 1.7441 3.0949 44 1 -7.5066 2.0537 5.3900 45 1 -5.7297 1.9477 5.4001 46 1 -6.5282 3.5295 5.5689 47 1 -4.5068 2.0139 1.7086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156310708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:14 Heat of formation + Delta-G solvation = 53.623081 kcal Electronic energy + Delta-G solvation = -26194.755124 eV Core-core repulsion = 22607.942177 eV Total energy + Delta-G solvation = -3586.812947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17878 -38.97876 -36.85235 -34.67749 -33.49833 -31.97383 -31.82623 -30.88347 -30.17124 -28.19581 -27.16226 -24.89226 -23.93378 -23.78492 -21.68960 -20.76310 -20.49401 -19.49055 -19.12409 -17.11048 -16.87087 -16.36035 -15.51292 -15.39774 -14.90836 -14.68753 -14.35832 -14.17785 -14.01328 -13.55745 -13.21099 -12.98979 -12.87988 -12.67141 -12.39246 -12.33172 -12.27289 -12.07979 -11.80138 -11.62949 -11.57214 -11.37739 -11.07175 -10.95492 -10.82074 -10.64966 -10.46110 -10.26909 -10.05363 -9.63376 -9.42057 -9.34509 -9.30134 -8.51866 -8.26290 -8.25707 -6.65009 -5.88125 -3.38096 1.95671 2.50996 2.86509 3.25550 3.30280 3.40325 3.40804 4.06453 4.34354 4.41776 4.72648 4.83280 4.93551 5.02624 5.21777 5.26867 5.31565 5.39459 5.48736 5.49911 5.63593 5.81562 5.83240 5.94561 5.96203 6.07314 6.20871 6.24009 6.29004 6.40692 6.51478 6.54769 6.65026 6.68967 6.72938 6.84217 6.92112 7.05620 7.16525 7.19639 7.49778 7.58163 7.76273 7.76399 8.31680 8.44420 8.91994 9.16263 9.77740 10.35593 11.17910 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.003366 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.240625 B = 8316.348474 C = 8844.740556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.291 1.291 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.145 4.145 15 C 0.104 3.896 16 N -0.704 5.704 17 C 0.504 3.496 18 O -0.555 6.555 19 C -0.063 4.063 20 C -0.209 4.209 21 C 0.062 3.938 22 N -0.300 5.300 23 N -0.376 5.376 24 C 0.133 3.867 25 C -0.165 4.165 26 C 0.064 3.936 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.254 0.746 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.410 0.590 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.179 0.821 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 -0.557 4.792 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.391 4.391 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.067 3.933 13 H 0.119 0.881 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.355 5.355 17 C 0.290 3.710 18 O -0.434 6.434 19 C -0.105 4.105 20 C -0.221 4.221 21 C -0.125 4.125 22 N -0.121 5.121 23 N -0.159 5.159 24 C 0.012 3.988 25 C -0.223 4.223 26 C -0.081 4.081 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.247 0.753 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.196 0.804 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.976 -0.428 6.476 18.174 hybrid contribution 0.820 0.407 -1.749 1.974 sum -16.155 -0.021 4.727 16.832 Atomic orbital electron populations 1.22420 1.00079 0.98838 1.01477 1.20761 0.91677 0.87541 0.98666 1.43867 1.75895 1.08229 1.02312 1.19112 1.07718 1.18652 0.93663 0.91860 1.25179 0.94519 1.01404 0.97801 1.70013 1.07283 1.36257 1.39692 0.86348 0.77621 0.81616 0.81892 1.20140 1.21501 1.21776 1.20520 0.89142 0.99367 0.84294 0.88065 1.22005 1.01102 0.98148 0.99117 1.22107 0.89297 0.95528 0.95260 1.45982 1.12352 1.58215 1.18960 1.20603 0.83490 0.79954 0.86998 1.90647 1.81882 1.52105 1.18765 1.19914 0.90923 1.02238 0.97397 1.19454 0.98612 0.97656 1.06349 1.23696 0.94200 0.99576 0.94992 1.77239 1.14157 0.98200 1.22552 1.48526 1.18655 1.16569 1.32126 1.21613 0.83302 0.96745 0.97146 1.22050 1.02585 1.03470 0.94211 1.22224 0.91147 0.99675 0.95100 0.93004 0.93448 0.95004 0.94213 0.94531 0.93602 0.94747 0.95057 0.90687 0.93181 0.93315 0.75325 0.88455 0.88668 0.80402 0.90108 0.88870 0.90931 0.91917 0.91157 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.95 37.16 0.37 -2.59 16 2 C 0.14 2.78 5.75 -4.04 -0.02 2.76 16 3 N -0.58 -12.82 1.88 -165.66 -0.31 -13.13 16 4 C -0.26 -6.35 9.07 -15.06 -0.14 -6.48 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.28 4.86 -17.43 -0.08 0.19 16 7 N -0.89 -23.40 10.90 55.49 0.61 -22.79 16 8 Si 0.90 19.90 29.59 -169.99 -5.03 14.87 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.17 3.69 1.95 -67.93 -0.13 3.56 16 13 H 0.10 2.45 5.94 -51.93 -0.31 2.14 16 14 C -0.14 -2.94 9.05 37.16 0.34 -2.60 16 15 C 0.10 2.00 4.36 -4.04 -0.02 1.98 16 16 N -0.70 -12.50 4.28 -60.29 -0.26 -12.76 16 17 C 0.50 8.63 7.78 -10.99 -0.09 8.55 16 18 O -0.56 -11.49 16.03 5.55 0.09 -11.40 16 19 C -0.06 -0.84 6.18 -29.04 -0.18 -1.02 16 20 C -0.21 -2.89 4.59 -105.06 -0.48 -3.37 16 21 C 0.06 0.87 11.96 -17.37 -0.21 0.66 16 22 N -0.30 -4.38 12.42 30.62 0.38 -4.00 16 23 N -0.38 -4.69 3.68 -61.36 -0.23 -4.92 16 24 C 0.13 1.11 7.23 -4.04 -0.03 1.08 16 25 C -0.17 -1.36 10.10 37.16 0.38 -0.99 16 26 C 0.06 0.81 11.36 -17.22 -0.20 0.62 16 27 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.04 0.71 6.29 -51.93 -0.33 0.38 16 32 H 0.25 6.56 8.31 -40.82 -0.34 6.23 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.59 6.56 -51.93 -0.34 0.25 16 35 H 0.07 1.72 7.69 -51.93 -0.40 1.32 16 36 H 0.05 1.00 6.98 -51.93 -0.36 0.64 16 37 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.41 7.39 7.73 -40.82 -0.32 7.07 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.55 8.07 -51.93 -0.42 0.14 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -30.28 380.70 -7.30 -37.58 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.79 Total: 8.46 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.49 Total: 2.35 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.19 Total: -57.60 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.28 -7.30 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156310708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.199 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds