Wall clock time and date at job start Tue Mar 31 2020 09:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46978 * 2 1 4 4 C 1.36938 * 119.99954 * 275.91141 * 3 2 1 5 5 H 1.08000 * 119.99579 * 34.07478 * 4 3 2 6 6 C 1.38806 * 120.00074 * 214.08189 * 4 3 2 7 7 N 1.31617 * 120.00382 * 17.04685 * 6 4 3 8 8 Si 1.86807 * 119.99939 * 197.04882 * 6 4 3 9 9 H 1.48506 * 109.46830 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.47310 * 239.99690 * 8 6 4 12 12 C 1.46493 * 120.00185 * 95.91589 * 3 2 1 13 13 H 1.09002 * 109.47561 * 177.14259 * 12 3 2 14 14 C 1.53003 * 109.47452 * 57.14390 * 12 3 2 15 15 C 1.53000 * 109.46918 * 297.14496 * 12 3 2 16 16 N 1.46506 * 109.46925 * 304.99655 * 15 12 3 17 17 C 1.34778 * 119.99814 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99973 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.47377 * 180.02562 * 19 17 16 21 21 C 1.39861 * 126.04017 * 90.02225 * 20 19 17 22 22 N 1.30836 * 108.20438 * 179.97438 * 21 20 19 23 23 N 1.40089 * 108.20216 * 0.02562 * 22 21 20 24 24 C 1.46496 * 126.03569 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.47462 * 305.02445 * 24 23 22 26 26 C 1.34945 * 107.92551 * 359.75436 * 23 22 21 27 27 H 1.09002 * 109.47400 * 300.00126 * 1 2 3 28 28 H 1.08997 * 109.46813 * 60.00126 * 1 2 3 29 29 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47400 * 239.99874 * 2 1 3 31 31 H 1.09001 * 109.47468 * 119.99628 * 2 1 3 32 32 H 0.97002 * 120.00245 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47608 * 180.02562 * 14 12 3 34 34 H 1.09005 * 109.46798 * 299.99955 * 14 12 3 35 35 H 1.08997 * 109.46990 * 59.99794 * 14 12 3 36 36 H 1.08999 * 109.47408 * 65.00292 * 15 12 3 37 37 H 1.09008 * 109.47342 * 185.00395 * 15 12 3 38 38 H 0.96990 * 119.99726 * 0.02562 * 16 15 12 39 39 H 1.08999 * 109.47213 * 300.00238 * 19 17 16 40 40 H 1.09001 * 109.47339 * 59.99650 * 19 17 16 41 41 H 1.08004 * 125.90248 * 359.96414 * 21 20 19 42 42 H 1.09004 * 109.47458 * 65.02643 * 24 23 22 43 43 H 1.09004 * 109.47625 * 185.02323 * 24 23 22 44 44 H 1.08996 * 109.47032 * 179.97438 * 25 24 23 45 45 H 1.08995 * 109.47002 * 299.99921 * 25 24 23 46 46 H 1.08999 * 109.46777 * 60.00110 * 25 24 23 47 47 H 1.07999 * 126.12770 * 180.23360 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8925 -1.9761 6 6 3.1561 2.9878 -1.3517 7 7 4.1990 2.9694 -0.5490 8 14 3.0551 4.2527 -2.7226 9 1 1.7913 4.0629 -3.4791 10 1 3.0831 5.6181 -2.1394 11 1 4.2106 4.0823 -3.6396 12 6 2.3858 2.0283 1.2619 13 1 2.7713 3.0275 1.0592 14 6 3.4622 1.1995 1.9656 15 6 1.1519 2.1305 2.1608 16 7 0.0791 2.8212 1.4408 17 6 -1.1105 3.0275 2.0400 18 8 -1.2926 2.6416 3.1754 19 6 -2.2142 3.7374 1.2993 20 6 -3.4291 3.8393 2.1852 21 6 -3.7206 4.8869 3.0648 22 7 -4.8567 4.6198 3.6562 23 7 -5.3244 3.3916 3.1712 24 6 -6.5647 2.7227 3.5718 25 6 -6.5836 2.5509 5.0920 26 6 -4.4331 2.9358 2.2663 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.9150 3.6127 -0.6690 33 1 3.7353 1.6806 2.9048 34 1 3.0766 0.2003 2.1684 35 1 4.3412 1.1266 1.3252 36 1 0.8190 1.1297 2.4362 37 1 1.4038 2.6902 3.0616 38 1 0.2249 3.1300 0.5331 39 1 -1.8814 4.7380 1.0232 40 1 -2.4664 3.1772 0.3990 41 1 -3.1129 5.7646 3.2278 42 1 -7.4188 3.3259 3.2637 43 1 -6.6203 1.7441 3.0949 44 1 -7.5066 2.0537 5.3900 45 1 -5.7297 1.9477 5.4001 46 1 -6.5282 3.5295 5.5689 47 1 -4.5068 2.0139 1.7086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156310708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:14 Heat of formation + Delta-G solvation = 36.341898 kcal Electronic energy + Delta-G solvation = -26195.504492 eV Core-core repulsion = 22607.942177 eV Total energy + Delta-G solvation = -3587.562315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14002 -40.40024 -38.49805 -35.48747 -35.05547 -33.68983 -33.07234 -32.34563 -31.04112 -29.89667 -28.31941 -26.27099 -25.72635 -24.60937 -23.28186 -21.77946 -21.53124 -20.98759 -20.54528 -18.71793 -17.91331 -17.70457 -16.97922 -16.40215 -16.38263 -16.23942 -15.76018 -15.32769 -15.16497 -14.84676 -14.38688 -14.23305 -14.14068 -14.05851 -13.88114 -13.60471 -13.43756 -13.21420 -13.06420 -12.97071 -12.78143 -12.68629 -12.57560 -12.50271 -12.32833 -12.24690 -11.96318 -11.79632 -11.42915 -11.31180 -11.11840 -10.72293 -10.39403 -10.29755 -9.75424 -9.25229 -8.46678 -7.76868 -5.28395 1.00872 1.52981 1.58966 1.65781 1.69824 1.82339 1.91776 2.58708 2.73278 3.37627 3.60418 3.70851 4.00643 4.08911 4.12887 4.20434 4.30185 4.36465 4.43725 4.50166 4.53377 4.64445 4.74229 4.76898 4.78723 4.84590 4.86526 4.94348 4.96693 4.99626 5.04719 5.10718 5.21856 5.24365 5.26750 5.38634 5.59957 5.69412 5.75065 5.76764 5.83296 5.90277 6.21223 6.55844 6.78676 6.91674 7.29120 7.54237 7.97822 8.50946 9.26699 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.003366 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.240625 B = 8316.348474 C = 8844.740556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.256 4.256 5 H 0.064 0.936 6 C -0.034 4.034 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.304 1.304 12 C 0.181 3.819 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.118 3.882 16 N -0.703 5.703 17 C 0.506 3.494 18 O -0.592 6.592 19 C -0.053 4.053 20 C -0.232 4.232 21 C 0.046 3.954 22 N -0.330 5.330 23 N -0.376 5.376 24 C 0.122 3.878 25 C -0.160 4.160 26 C 0.065 3.935 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.247 0.753 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.411 0.589 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.189 0.811 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -1.276 4.091 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.231 4.231 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.220 1.220 11 H -0.232 1.232 12 C 0.074 3.926 13 H 0.090 0.910 14 C -0.196 4.196 15 C -0.008 4.008 16 N -0.353 5.353 17 C 0.294 3.706 18 O -0.473 6.473 19 C -0.093 4.093 20 C -0.243 4.243 21 C -0.140 4.140 22 N -0.152 5.152 23 N -0.159 5.159 24 C 0.003 3.997 25 C -0.218 4.218 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.247 0.753 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.206 0.794 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.197 -1.153 5.772 20.079 hybrid contribution 1.453 0.543 -1.490 2.151 sum -17.744 -0.610 4.282 18.263 Atomic orbital electron populations 1.22214 0.97777 1.00197 1.01009 1.20854 0.93328 0.86255 0.98397 1.43990 1.76040 1.09122 1.02019 1.19292 1.06997 1.18216 0.94149 0.91815 1.25748 0.94494 1.03153 0.99717 1.70148 1.07881 1.36839 1.41310 0.85452 0.77366 0.79420 0.79575 1.18787 1.21986 1.23162 1.20348 0.90001 0.97844 0.84453 0.91037 1.21884 0.99696 0.98945 0.99029 1.21789 0.88929 0.95463 0.94628 1.45961 1.12406 1.58141 1.18809 1.21264 0.83658 0.79099 0.86564 1.90633 1.82455 1.53688 1.20526 1.19892 0.89173 1.02883 0.97384 1.19627 0.99359 0.98209 1.07144 1.24004 0.94425 1.00359 0.95190 1.77175 1.14772 0.99721 1.23541 1.48904 1.19491 1.15925 1.31578 1.22024 0.82255 0.98188 0.97272 1.22011 1.03307 1.02245 0.94228 1.22726 0.90631 1.00141 0.94716 0.93558 0.93661 0.92749 0.95202 0.94094 0.94363 0.93304 0.93808 0.93626 0.93519 0.93755 0.75303 0.86733 0.86426 0.79437 0.88641 0.85905 0.87943 0.93738 0.93171 0.78605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.95 71.98 0.72 -4.25 16 2 C 0.14 5.27 5.75 86.38 0.50 5.76 16 3 N -0.59 -25.62 1.88 -678.03 -1.28 -26.90 16 4 C -0.26 -12.24 9.07 84.03 0.76 -11.48 16 5 H 0.06 3.02 7.89 -2.91 -0.02 3.00 16 6 C -0.03 -1.69 4.86 84.86 0.41 -1.28 16 7 N -0.92 -48.98 10.90 21.65 0.24 -48.74 16 8 Si 0.95 40.88 29.59 68.60 2.03 42.91 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 12 C 0.18 7.64 1.95 44.99 0.09 7.73 16 13 H 0.07 3.51 5.94 -2.39 -0.01 3.49 16 14 C -0.14 -5.53 9.05 71.98 0.65 -4.88 16 15 C 0.12 4.48 4.36 86.38 0.38 4.85 16 16 N -0.70 -24.13 4.28 -463.04 -1.98 -26.11 16 17 C 0.51 16.62 7.78 87.65 0.68 17.30 16 18 O -0.59 -23.98 16.03 -3.05 -0.05 -24.03 16 19 C -0.05 -1.27 6.18 29.10 0.18 -1.09 16 20 C -0.23 -6.02 4.59 -20.15 -0.09 -6.11 16 21 C 0.05 1.25 11.96 85.23 1.02 2.27 16 22 N -0.33 -9.44 12.42 -57.03 -0.71 -10.15 16 23 N -0.38 -8.75 3.68 -348.05 -1.28 -10.03 16 24 C 0.12 1.75 7.23 86.38 0.62 2.37 16 25 C -0.16 -2.40 10.10 71.98 0.73 -1.68 16 26 C 0.06 1.48 11.36 83.54 0.95 2.43 16 27 H 0.05 1.56 5.32 -2.39 -0.01 1.55 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.04 1.52 6.29 -2.39 -0.02 1.51 16 32 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.62 6.56 -2.38 -0.02 1.61 16 35 H 0.04 2.11 7.69 -2.39 -0.02 2.09 16 36 H 0.05 1.81 6.98 -2.39 -0.02 1.79 16 37 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.41 14.24 7.73 -92.72 -0.72 13.52 16 39 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.31 16 41 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.12 1.02 8.07 -2.39 -0.02 1.01 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -65.38 380.70 4.80 -60.58 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.24 Total: 30.52 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.59 Total: 11.95 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -5.01 Total: -121.93 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -65.38 4.80 -60.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156310708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.922 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds