Wall clock time and date at job start Tue Mar 31 2020 09:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99747 * 2 1 4 4 C 1.52996 * 109.46939 * 293.95217 * 3 2 1 5 5 H 1.08997 * 109.52565 * 54.87123 * 4 3 2 6 6 C 1.53179 * 109.52434 * 175.00183 * 4 3 2 7 7 C 1.53172 * 109.04149 * 176.88750 * 6 4 3 8 8 C 1.53100 * 109.15888 * 303.01757 * 7 6 4 9 9 O 1.42904 * 109.41315 * 57.61018 * 8 7 6 10 10 C 1.42902 * 114.09713 * 298.83840 * 9 8 7 11 11 C 1.38582 * 111.00284 * 123.94910 * 2 1 3 12 12 N 1.31214 * 126.47636 * 236.21974 * 11 2 1 13 13 N 1.28526 * 109.86062 * 180.25557 * 12 11 2 14 14 C 1.30302 * 110.05397 * 359.74976 * 13 12 11 15 15 C 1.50701 * 126.34566 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46953 * 269.95230 * 15 14 13 17 17 C 1.50699 * 109.47061 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99731 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99673 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47348 * 60.00178 * 21 19 17 23 23 H 1.48503 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47418 * 299.99811 * 21 19 17 25 25 N 1.36457 * 126.46832 * 56.05052 * 11 2 1 26 26 C 1.46499 * 127.13801 * 0.02562 * 25 11 2 27 27 H 1.09001 * 109.47225 * 296.04399 * 1 2 3 28 28 H 1.08999 * 109.46778 * 56.04852 * 1 2 3 29 29 H 1.09001 * 109.46692 * 176.04403 * 1 2 3 30 30 H 1.08997 * 109.46924 * 53.95129 * 3 2 1 31 31 H 1.09000 * 109.47055 * 173.95378 * 3 2 1 32 32 H 1.09000 * 109.54132 * 296.75604 * 6 4 3 33 33 H 1.08999 * 109.54152 * 57.01633 * 6 4 3 34 34 H 1.08998 * 109.52380 * 62.91740 * 7 6 4 35 35 H 1.08994 * 109.52419 * 183.05100 * 7 6 4 36 36 H 1.09001 * 109.47538 * 177.58825 * 8 7 6 37 37 H 1.08994 * 109.48328 * 297.61166 * 8 7 6 38 38 H 1.09000 * 109.47983 * 301.17284 * 10 9 8 39 39 H 1.08999 * 109.47801 * 181.14810 * 10 9 8 40 40 H 1.08992 * 109.47473 * 29.95390 * 15 14 13 41 41 H 1.09005 * 109.46760 * 149.95706 * 15 14 13 42 42 H 1.09002 * 109.46811 * 300.00717 * 16 15 14 43 43 H 1.09004 * 109.46870 * 59.99849 * 16 15 14 44 44 H 0.96998 * 120.00097 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.47391 * 269.71037 * 26 25 11 46 46 H 1.09001 * 109.46813 * 149.71094 * 26 25 11 47 47 H 1.09004 * 109.47041 * 29.71221 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 1 0.5535 2.0042 -1.4711 6 6 2.0698 3.5243 -1.2702 7 6 1.7712 4.1797 -2.6220 8 6 2.4830 3.3965 -3.7283 9 8 2.0530 2.0340 -3.6977 10 6 2.3485 1.3563 -2.4749 11 6 1.9657 -0.7225 1.0732 12 7 2.7929 -0.2843 1.9926 13 7 3.0478 -1.2223 2.8336 14 6 2.3994 -2.3041 2.5063 15 6 2.4312 -3.6206 3.2390 16 6 3.5572 -4.4904 2.6762 17 6 3.5886 -5.8071 3.4084 18 1 2.8771 -6.0037 4.1966 19 6 4.5266 -6.7603 3.0727 20 7 5.3934 -6.5206 2.1132 21 14 4.5660 -8.3922 3.9809 22 1 3.2668 -9.0891 3.8032 23 1 5.6596 -9.2359 3.4354 24 1 4.8036 -8.1487 5.4264 25 7 1.6843 -2.0231 1.3752 26 6 0.8037 -2.9319 0.6370 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 1.5212 4.0433 -0.4842 33 1 3.1393 3.5787 -1.0669 34 1 0.6963 4.1693 -2.8023 35 1 2.1295 5.2090 -2.6149 36 1 2.2394 3.8329 -4.6970 37 1 3.5604 3.4415 -3.5700 38 1 3.4243 1.3743 -2.3001 39 1 2.0082 0.3229 -2.5407 40 1 2.6059 -3.4419 4.2999 41 1 1.4774 -4.1320 3.1088 42 1 3.3825 -4.6690 1.6152 43 1 4.5109 -3.9789 2.8062 44 1 6.0530 -7.1913 1.8768 45 1 -0.2098 -2.8557 1.0308 46 1 1.1613 -3.9555 0.7496 47 1 0.8046 -2.6608 -0.4188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351094607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:18 Heat of formation + Delta-G solvation = 25.716344 kcal Electronic energy + Delta-G solvation = -25825.110914 eV Core-core repulsion = 22237.087840 eV Total energy + Delta-G solvation = -3588.023074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.61123 -39.84038 -37.68652 -34.91695 -34.26997 -33.63685 -32.01651 -31.38979 -28.93046 -27.63271 -27.07882 -25.50149 -25.23690 -24.74301 -22.49714 -21.77125 -20.51168 -20.31145 -19.81967 -17.11685 -16.62176 -16.51000 -16.19790 -16.07972 -15.92816 -15.18312 -15.00428 -14.72184 -14.50739 -14.23354 -13.70274 -13.36042 -13.18985 -13.14176 -12.91449 -12.85255 -12.59340 -12.33658 -12.29028 -11.79552 -11.48643 -11.34169 -11.15172 -11.05706 -10.97789 -10.94461 -10.75769 -10.59122 -10.35974 -10.05270 -9.88553 -9.74289 -9.69112 -9.37054 -9.23717 -8.41312 -7.93049 -6.05510 -4.10076 2.12599 2.48218 3.26451 3.30457 3.35710 3.37666 3.64610 3.67897 4.40521 4.40913 4.48600 4.53514 4.61636 4.70642 4.83445 4.93428 5.00065 5.07049 5.09668 5.16558 5.17385 5.24541 5.30227 5.37720 5.41493 5.44097 5.51053 5.51424 5.59427 5.60849 5.64181 5.70377 5.78915 5.92824 5.99923 6.19695 6.32472 6.45340 6.61100 6.68040 6.91236 6.98829 7.40021 7.55056 7.68891 7.91732 8.28989 8.95964 9.20197 9.54534 11.05506 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.002588 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.620351 B =10818.451817 C =11131.292989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.451 5.451 3 C 0.078 3.922 4 C -0.120 4.120 5 H 0.082 0.918 6 C -0.117 4.117 7 C -0.154 4.154 8 C 0.058 3.942 9 O -0.384 6.384 10 C 0.071 3.929 11 C 0.334 3.666 12 N -0.325 5.325 13 N -0.295 5.295 14 C 0.213 3.787 15 C -0.031 4.031 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 N -0.482 5.482 26 C 0.075 3.925 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.014 0.986 43 H 0.025 0.975 44 H 0.263 0.737 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 18.466 -10.577 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.174 5.174 3 C -0.049 4.049 4 C -0.139 4.139 5 H 0.100 0.900 6 C -0.156 4.156 7 C -0.191 4.191 8 C -0.019 4.019 9 O -0.303 6.303 10 C -0.006 4.006 11 C -0.023 4.023 12 N -0.169 5.169 13 N -0.133 5.133 14 C -0.055 4.055 15 C -0.071 4.071 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.177 5.177 26 C -0.069 4.069 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.332 19.018 -10.514 24.508 hybrid contribution -0.867 -1.336 0.484 1.664 sum -12.199 17.681 -10.030 23.708 Atomic orbital electron populations 1.22708 0.84996 1.03559 1.02100 1.58646 1.08682 1.15065 1.34989 1.22051 1.02097 0.84438 0.96307 1.21884 1.01698 0.95154 0.95160 0.89988 1.21598 1.02067 0.94485 0.97403 1.22170 1.01804 0.99724 0.95447 1.22574 0.97776 0.82557 0.99028 1.87948 1.81904 1.23828 1.36616 1.22617 0.98689 0.96565 0.82734 1.22439 1.01052 0.84129 0.94656 1.74483 1.17305 1.23336 1.01819 1.73986 1.21043 0.97290 1.21010 1.25560 0.92975 0.99672 0.87297 1.20435 1.02250 0.85588 0.98782 1.19068 0.92324 0.93251 0.95980 1.21101 1.16353 0.99671 1.19264 0.92349 1.25015 0.95371 0.98736 0.95132 1.69961 1.18534 1.34994 1.29535 0.86613 0.77600 0.83375 0.80152 1.20213 1.21277 1.20083 1.46046 1.37957 1.10130 1.23608 1.22119 0.93038 0.94874 0.96823 0.94274 0.89391 0.90567 0.92697 0.88793 0.91262 0.91289 0.91131 0.90831 0.89131 0.93187 0.93041 0.87866 0.89313 0.91259 0.96763 0.95619 0.92778 0.90787 0.88086 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.17 60.06 0.55 0.68 16 2 N -0.45 -5.58 4.33 -182.38 -0.79 -6.37 16 3 C 0.08 0.87 3.83 -3.82 -0.01 0.85 16 4 C -0.12 -1.05 2.31 -90.48 -0.21 -1.26 16 5 H 0.08 0.68 6.26 -51.93 -0.33 0.35 16 6 C -0.12 -0.88 5.31 -26.55 -0.14 -1.02 16 7 C -0.15 -1.03 6.14 -26.59 -0.16 -1.19 16 8 C 0.06 0.45 6.84 37.21 0.25 0.70 16 9 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 10 C 0.07 0.71 5.99 37.20 0.22 0.93 16 11 C 0.33 5.53 7.20 -318.87 -2.30 3.24 16 12 N -0.32 -6.43 11.16 30.31 0.34 -6.10 16 13 N -0.30 -6.45 12.18 32.99 0.40 -6.05 16 14 C 0.21 4.24 7.32 -154.01 -1.13 3.11 16 15 C -0.03 -0.62 5.36 -27.88 -0.15 -0.77 16 16 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 17 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 21 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 N -0.48 -8.02 3.21 -121.45 -0.39 -8.41 16 26 C 0.07 0.90 9.20 59.85 0.55 1.45 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.64 6.20 -51.93 -0.32 0.32 16 29 H 0.08 0.65 5.41 -51.93 -0.28 0.37 16 30 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.09 1.22 7.76 -51.93 -0.40 0.81 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.10 7.84 -51.93 -0.41 0.70 16 40 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 45 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 46 H 0.10 1.32 7.88 -51.93 -0.41 0.91 16 47 H 0.09 0.93 7.55 -51.93 -0.39 0.53 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -33.43 372.40 -10.53 -43.97 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.97 Total: -2.87 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.07 Total: -5.67 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.30 Total: -52.73 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.43 -10.53 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351094607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.685 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds