Wall clock time and date at job start Tue Mar 31 2020 09:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47139 * 2 1 4 4 C 1.42902 * 113.99840 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47233 * 179.97438 * 4 3 2 6 6 N 1.30293 * 126.34757 * 264.55372 * 5 4 3 7 7 N 1.28532 * 110.05303 * 179.81737 * 6 5 4 8 8 C 1.31216 * 109.85709 * 0.45125 * 7 6 5 9 9 N 1.38583 * 126.47060 * 179.73091 * 8 7 6 10 10 C 1.46905 * 111.00051 * 106.91492 * 9 8 7 11 11 C 1.46899 * 111.00113 * 342.95940 * 9 8 7 12 12 H 1.09002 * 109.46993 * 60.00167 * 11 9 8 13 13 C 1.52997 * 109.46761 * 300.00108 * 11 9 8 14 14 C 1.50700 * 109.47006 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00255 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99807 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00169 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00008 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47280 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47296 * 119.99601 * 18 16 14 21 21 H 1.48501 * 109.47329 * 239.99553 * 18 16 14 22 22 N 1.36456 * 107.05778 * 359.72793 * 8 7 6 23 23 C 1.46502 * 127.13799 * 180.02562 * 22 8 7 24 24 H 1.08995 * 115.55412 * 99.91634 * 23 22 8 25 25 C 1.53002 * 117.49328 * 245.58479 * 23 22 8 26 26 C 1.52998 * 117.49713 * 314.20620 * 23 22 8 27 27 H 1.09003 * 117.50031 * 359.97438 * 26 23 22 28 28 C 1.52995 * 117.50098 * 145.02410 * 26 23 22 29 29 H 1.09003 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46994 * 300.00133 * 1 2 3 31 31 H 1.08998 * 109.47023 * 60.00422 * 1 2 3 32 32 H 1.09007 * 109.46819 * 119.99588 * 2 1 3 33 33 H 1.08997 * 109.47049 * 239.99380 * 2 1 3 34 34 H 1.09001 * 109.47027 * 299.99823 * 4 3 2 35 35 H 1.09000 * 109.47221 * 59.99809 * 4 3 2 36 36 H 1.08999 * 109.47128 * 53.96218 * 10 9 8 37 37 H 1.08995 * 109.47038 * 173.95464 * 10 9 8 38 38 H 1.08999 * 109.46838 * 293.95921 * 10 9 8 39 39 H 1.09000 * 109.47538 * 60.00510 * 13 11 9 40 40 H 1.09009 * 109.47053 * 180.02562 * 13 11 9 41 41 H 1.09002 * 109.47416 * 299.99800 * 13 11 9 42 42 H 0.96998 * 120.00422 * 180.02562 * 17 16 14 43 43 H 1.09004 * 117.49807 * 214.97647 * 25 23 22 44 44 H 1.08999 * 117.50414 * 359.97438 * 25 23 22 45 45 H 1.09002 * 109.46853 * 59.99698 * 28 26 23 46 46 H 1.08997 * 109.47680 * 179.97438 * 28 26 23 47 47 H 1.09003 * 109.47126 * 300.00092 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8196 2.9161 -0.0001 6 7 4.1154 3.6359 -1.0451 7 7 4.3966 4.8378 -0.6870 8 6 4.3038 4.9477 0.6172 9 7 4.5382 6.0897 1.3665 10 6 3.2796 6.6588 1.8666 11 6 5.2934 7.0825 0.5907 12 1 4.7252 7.3580 -0.2978 13 6 6.6385 6.4861 0.1713 14 6 5.5293 8.3072 1.4365 15 1 5.1552 8.3445 2.4489 16 6 6.2218 9.3806 0.9175 17 7 6.6768 9.3354 -0.3156 18 14 6.5135 10.8990 1.9657 19 1 5.9046 10.7002 3.3054 20 1 7.9738 11.1252 2.1137 21 1 5.8938 12.0790 1.3110 22 7 3.9326 3.7251 1.0964 23 6 3.7026 3.3561 2.4954 24 1 2.6590 3.3283 2.8088 25 6 4.6562 2.3376 3.1233 26 6 4.7380 3.8116 3.5256 27 1 5.5907 4.3853 3.1624 28 6 4.2296 4.1933 4.9171 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 3.8333 0.9766 0.8908 35 1 3.8340 0.9763 -0.8891 36 1 2.7232 5.8923 2.4059 37 1 3.4979 7.4893 2.5380 38 1 2.6841 7.0172 1.0270 39 1 6.4683 5.6001 -0.4404 40 1 7.1992 7.2230 -0.4040 41 1 7.2067 6.2106 1.0598 42 1 7.1643 10.0903 -0.6807 43 1 4.2400 1.6400 3.8501 44 1 5.4544 1.9418 2.4954 45 1 3.7309 3.3361 5.3695 46 1 5.0707 4.4949 5.5413 47 1 3.5248 5.0205 4.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460544607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:40 Heat of formation + Delta-G solvation = 77.100938 kcal Electronic energy + Delta-G solvation = -26904.567318 eV Core-core repulsion = 23318.772448 eV Total energy + Delta-G solvation = -3585.794870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51329 -38.19205 -37.98283 -36.99459 -33.08665 -32.80832 -31.85254 -29.91738 -29.24663 -28.30633 -26.73203 -25.12268 -24.35439 -23.21241 -23.00098 -21.99847 -20.64765 -20.16110 -19.26614 -17.32092 -16.84213 -16.27871 -16.14951 -15.87151 -15.29668 -14.92175 -14.73853 -14.31805 -13.99039 -13.55060 -13.51196 -13.20096 -13.05122 -12.79316 -12.51996 -12.39355 -12.28253 -11.90492 -11.67629 -11.52644 -11.41690 -11.18147 -11.03586 -10.97333 -10.71765 -10.65329 -10.41601 -10.27039 -10.19692 -10.05993 -9.90384 -9.69770 -9.54755 -9.22764 -8.63484 -8.45219 -7.43671 -6.03253 -4.10653 2.06797 2.57658 3.22595 3.28138 3.35896 3.38510 3.41672 3.79344 4.28825 4.43782 4.51575 4.58990 4.63611 4.78929 4.87215 4.94012 5.02030 5.12301 5.18651 5.26700 5.28731 5.44905 5.45329 5.57400 5.66086 5.67295 5.72603 5.78043 5.87781 5.91579 6.07565 6.12942 6.18309 6.29929 6.39709 6.51977 6.87962 6.97799 6.98752 7.16476 7.25765 7.47289 7.71693 7.76199 7.98209 8.26419 8.47358 8.91692 9.33051 9.54005 11.03254 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.003957 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.812466 B = 7073.816410 C = 7822.078781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.164 3.836 5 C 0.148 3.852 6 N -0.267 5.267 7 N -0.315 5.315 8 C 0.395 3.605 9 N -0.456 5.456 10 C 0.046 3.954 11 C 0.228 3.772 12 H 0.024 0.976 13 C -0.134 4.134 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.884 5.884 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.451 5.451 23 C 0.060 3.940 24 H 0.129 0.871 25 C -0.174 4.174 26 C -0.119 4.119 27 H 0.127 0.873 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.023 0.977 40 H 0.089 0.911 41 H 0.024 0.976 42 H 0.262 0.738 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 -18.177 8.322 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.302 6.302 4 C 0.086 3.914 5 C -0.119 4.119 6 N -0.110 5.110 7 N -0.160 5.160 8 C 0.040 3.960 9 N -0.181 5.181 10 C -0.101 4.101 11 C 0.124 3.876 12 H 0.042 0.958 13 C -0.193 4.193 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.146 5.146 23 C -0.044 4.044 24 H 0.146 0.854 25 C -0.212 4.212 26 C -0.138 4.138 27 H 0.144 0.856 28 C -0.176 4.176 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.838 -17.628 7.160 20.578 hybrid contribution -0.222 0.479 1.193 1.304 sum -8.060 -17.149 8.353 20.708 Atomic orbital electron populations 1.21737 0.93664 1.02123 1.03306 1.22468 0.95688 0.83522 1.00179 1.87991 1.20127 1.26597 1.95460 1.20307 0.82020 0.87198 1.01918 1.23847 1.08982 0.95784 0.83296 1.73952 1.14273 0.98835 1.23903 1.74873 1.23290 1.10348 1.07489 1.23141 0.96949 0.87114 0.88841 1.59136 1.18762 1.04121 1.36071 1.22249 0.88529 0.99472 0.99862 1.19362 0.90249 0.86340 0.91650 0.95801 1.21835 0.98795 0.99516 0.99117 1.21089 1.36223 0.98467 0.99504 0.91664 1.24903 0.95430 0.98533 0.95049 1.69931 1.37038 1.31063 1.14128 0.86435 0.77928 0.82669 0.80303 1.19738 1.20995 1.21043 1.45602 1.53336 1.08956 1.06744 1.21904 0.97176 1.06729 0.78635 0.85376 1.23564 1.01329 0.93340 1.02975 1.22751 1.00163 0.96022 0.94877 0.85553 1.21351 1.01549 1.01397 0.93318 0.91085 0.91934 0.91695 0.93355 0.93066 0.91680 0.90042 0.93649 0.88859 0.95130 0.95759 0.89250 0.95670 0.92809 0.87368 0.88274 0.92696 0.91345 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.52 6.66 37.16 0.25 0.76 16 3 O -0.38 -5.04 10.33 -35.23 -0.36 -5.40 16 4 C 0.16 2.12 6.27 36.01 0.23 2.34 16 5 C 0.15 2.63 7.70 -154.02 -1.19 1.44 16 6 N -0.27 -5.82 12.18 32.99 0.40 -5.42 16 7 N -0.32 -7.57 9.80 30.32 0.30 -7.27 16 8 C 0.39 8.49 5.97 -318.87 -1.90 6.59 16 9 N -0.46 -9.95 4.05 -176.08 -0.71 -10.67 16 10 C 0.05 0.89 9.13 60.07 0.55 1.44 16 11 C 0.23 5.91 1.72 -68.87 -0.12 5.79 16 12 H 0.02 0.71 7.94 -51.93 -0.41 0.30 16 13 C -0.13 -3.52 8.79 37.16 0.33 -3.19 16 14 C -0.51 -13.72 7.95 -34.44 -0.27 -14.00 16 15 H 0.07 1.68 6.40 -52.49 -0.34 1.34 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.45 -7.94 3.10 -107.01 -0.33 -8.27 16 23 C 0.06 0.80 5.31 -67.93 -0.36 0.44 16 24 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 25 C -0.17 -1.81 9.41 -26.73 -0.25 -2.06 16 26 C -0.12 -1.49 5.73 -90.62 -0.52 -2.01 16 27 H 0.13 2.01 7.92 -51.93 -0.41 1.60 16 28 C -0.12 -1.18 10.19 37.15 0.38 -0.80 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.67 7.39 -51.93 -0.38 0.29 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.74 7.30 -51.93 -0.38 0.36 16 37 H 0.09 1.79 6.31 -51.93 -0.33 1.46 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.62 6.09 -51.93 -0.32 0.30 16 40 H 0.09 2.53 6.07 -51.92 -0.32 2.22 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 43 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -32.44 379.42 -9.90 -42.34 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.92 Total: 0.25 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.60 Total: -2.43 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.36 Total: -5.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.44 -9.90 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460544607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.446 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds