Wall clock time and date at job start Tue Mar 31 2020 09:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 5 5 C 1.52999 * 109.47276 * 269.99459 * 4 3 2 6 6 N 1.46499 * 109.47276 * 179.97438 * 5 4 3 7 7 C 1.36934 * 119.99791 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00081 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00123 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99463 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00334 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46969 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46804 * 120.00164 * 11 9 7 14 14 H 1.48496 * 109.47413 * 240.00264 * 11 9 7 15 15 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 16 16 O 1.21274 * 119.99897 * 179.73022 * 15 3 2 17 17 C 1.50695 * 119.99635 * 0.02562 * 15 3 2 18 18 C 1.50707 * 109.47011 * 180.02562 * 17 15 3 19 19 C 1.39867 * 126.04009 * 90.02059 * 18 17 15 20 20 C 1.50698 * 125.90048 * 0.02562 * 19 18 17 21 21 N 1.30839 * 108.19973 * 179.97438 * 19 18 17 22 22 N 1.40088 * 108.20700 * 0.02562 * 21 19 18 23 23 C 1.46503 * 126.03647 * 179.97438 * 22 21 19 24 24 C 1.34944 * 107.92383 * 359.75759 * 22 21 19 25 25 C 1.50698 * 126.12874 * 180.23819 * 24 22 21 26 26 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 28 28 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 30 30 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 31 31 H 1.08998 * 109.47416 * 29.99674 * 4 3 2 32 32 H 1.09008 * 109.47058 * 150.00274 * 4 3 2 33 33 H 1.08998 * 109.47074 * 300.00425 * 5 4 3 34 34 H 1.09007 * 109.46853 * 59.99785 * 5 4 3 35 35 H 0.96994 * 119.99898 * 0.02562 * 6 5 4 36 36 H 0.97005 * 119.99810 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.47403 * 300.00056 * 17 15 3 38 38 H 1.09002 * 109.47422 * 60.00295 * 17 15 3 39 39 H 1.08999 * 109.47179 * 89.99368 * 20 19 18 40 40 H 1.08997 * 109.46923 * 209.99509 * 20 19 18 41 41 H 1.09003 * 109.46789 * 329.99606 * 20 19 18 42 42 H 1.09002 * 109.46705 * 89.97706 * 23 22 21 43 43 H 1.08997 * 109.46592 * 209.97235 * 23 22 21 44 44 H 1.08996 * 109.46886 * 329.98125 * 23 22 21 45 45 H 1.09001 * 109.47200 * 270.17895 * 25 24 22 46 46 H 1.09002 * 109.46831 * 30.17606 * 25 24 22 47 47 H 1.09000 * 109.47377 * 150.17871 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9514 2.5217 -2.9794 7 6 5.1834 2.4487 -3.5726 8 1 5.9754 1.8827 -3.1048 9 6 5.4145 3.1022 -4.7754 10 7 4.4494 3.7924 -5.3452 11 14 7.0953 3.0033 -5.5843 12 1 7.9988 2.1726 -4.7483 13 1 6.9618 2.3884 -6.9294 14 1 7.6613 4.3695 -5.7185 15 6 2.2430 2.0165 1.1673 16 8 2.6519 3.1583 1.1673 17 6 1.9923 1.3059 2.4723 18 6 2.3181 2.2294 3.6178 19 6 1.4292 3.1095 4.2436 20 6 -0.0232 3.2990 3.8892 21 7 2.0764 3.7391 5.1906 22 7 3.3996 3.2792 5.1969 23 6 4.4626 3.7246 6.1013 24 6 3.5209 2.3499 4.2260 25 6 4.7724 1.5855 3.8790 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5817 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 4.3882 2.2156 -0.9507 34 1 3.8745 0.7623 -1.8407 35 1 3.2402 3.0303 -3.3994 36 1 4.6110 4.2493 -6.1855 37 1 0.9444 1.0113 2.5302 38 1 2.6229 0.4186 2.5298 39 1 -0.6325 2.6080 4.4717 40 1 -0.3210 4.3234 4.1129 41 1 -0.1664 3.1028 2.8266 42 1 4.4665 3.0984 6.9935 43 1 5.4256 3.6448 5.5971 44 1 4.2862 4.7618 6.3862 45 1 5.3384 2.1367 3.1280 46 1 5.3818 1.4608 4.7741 47 1 4.5023 0.6062 3.4840 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754059310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:45 Heat of formation + Delta-G solvation = 46.467220 kcal Electronic energy + Delta-G solvation = -25919.257240 eV Core-core repulsion = 22332.133992 eV Total energy + Delta-G solvation = -3587.123248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47754 -39.57928 -36.07540 -34.60237 -34.33509 -33.07783 -31.71955 -30.22833 -29.96597 -29.42529 -27.50831 -26.22655 -24.94191 -23.64718 -23.17868 -21.50391 -19.89535 -19.59121 -18.60771 -17.20644 -16.91829 -16.57825 -15.78864 -15.66683 -15.23658 -14.54162 -14.05530 -13.96999 -13.84122 -13.77837 -13.57500 -13.44185 -13.27384 -13.23015 -12.98865 -12.88104 -12.78311 -12.55719 -12.21092 -12.04640 -12.02849 -11.90778 -11.67131 -11.20117 -11.14048 -10.93892 -10.84750 -10.62729 -10.47352 -10.05092 -9.74119 -9.51331 -9.05771 -8.84163 -8.40088 -8.27647 -6.88962 -5.72949 -3.01735 1.81698 2.43448 2.63201 2.91808 3.29950 3.45776 3.51183 3.53604 4.34997 4.52772 4.63919 4.74712 4.82989 4.88314 4.93725 5.00601 5.04273 5.15355 5.17358 5.19817 5.30670 5.31723 5.40644 5.51970 5.53195 5.57315 5.68717 5.69955 5.72153 5.73590 5.82175 5.89946 5.99403 6.10426 6.13404 6.14864 6.22566 6.64682 6.67909 6.82244 6.98638 7.00353 7.66456 7.72330 7.73551 8.45151 8.50411 9.56535 10.13829 10.48787 11.50135 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.003256 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.597960 B = 8597.584009 C = 9663.929250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.611 5.611 4 C 0.109 3.891 5 C 0.144 3.856 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.509 3.491 16 O -0.523 6.523 17 C -0.057 4.057 18 C -0.219 4.219 19 C 0.091 3.909 20 C -0.072 4.072 21 N -0.302 5.302 22 N -0.376 5.376 23 C 0.104 3.896 24 C 0.101 3.899 25 C -0.094 4.094 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 -9.357 22.632 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.345 5.345 4 C -0.014 4.014 5 C 0.016 3.984 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.297 3.703 16 O -0.398 6.398 17 C -0.098 4.098 18 C -0.230 4.230 19 C -0.075 4.075 20 C -0.131 4.131 21 N -0.124 5.124 22 N -0.158 5.158 23 C -0.038 4.038 24 C -0.027 4.027 25 C -0.153 4.153 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.046 -7.846 23.651 25.896 hybrid contribution 0.865 -0.430 -1.320 1.636 sum -6.181 -8.276 22.331 24.604 Atomic orbital electron populations 1.22225 0.96052 1.02107 1.02631 1.21567 0.94275 0.82832 1.03369 1.47988 1.66187 1.14130 1.06243 1.21642 0.97875 0.98364 0.83486 1.20897 0.92968 0.95338 0.89239 1.42229 1.12875 1.60795 1.21645 1.19251 0.89321 1.25932 1.02213 0.91203 1.24747 0.97814 1.00428 0.98092 1.69675 1.31498 1.37506 1.19526 0.86101 0.83656 0.77212 0.79146 1.20580 1.21861 1.21845 1.20681 0.77693 0.86946 0.85018 1.90732 1.44078 1.17947 1.87064 1.19948 1.03363 0.97100 0.89376 1.19009 0.93192 1.07176 1.03626 1.22080 0.97000 0.94597 0.93839 1.20159 0.88031 1.02924 1.01967 1.77262 0.88581 1.23110 1.23431 1.48174 1.08639 1.31289 1.27700 1.21786 0.87608 1.01845 0.92542 1.20754 0.97020 0.93410 0.91481 1.20483 0.92715 0.99758 1.02296 0.91602 0.92524 0.92038 0.89926 0.90567 0.90744 0.89937 0.96083 0.96555 0.78294 0.93568 0.88545 0.88789 0.90660 0.90897 0.90613 0.91048 0.89604 0.89354 0.89686 0.91244 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.10 1.00 5.93 -4.04 -0.02 0.98 16 3 N -0.61 -8.57 2.47 -173.69 -0.43 -9.00 16 4 C 0.11 1.91 5.52 -4.04 -0.02 1.89 16 5 C 0.14 3.10 6.58 -4.04 -0.03 3.07 16 6 N -0.73 -19.42 5.60 -59.91 -0.34 -19.75 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.51 7.71 7.67 -10.98 -0.08 7.63 16 16 O -0.52 -10.57 15.62 5.56 0.09 -10.48 16 17 C -0.06 -0.63 4.19 -29.03 -0.12 -0.75 16 18 C -0.22 -2.90 4.59 -105.05 -0.48 -3.38 16 19 C 0.09 1.26 7.22 -82.41 -0.59 0.67 16 20 C -0.07 -0.76 10.12 36.00 0.36 -0.40 16 21 N -0.30 -4.48 12.58 33.67 0.42 -4.06 16 22 N -0.38 -4.81 4.01 -63.88 -0.26 -5.07 16 23 C 0.10 0.84 11.09 59.85 0.66 1.51 16 24 C 0.10 1.27 6.93 -82.27 -0.57 0.70 16 25 C -0.09 -0.88 9.68 36.00 0.35 -0.53 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 7.22 -51.93 -0.38 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.08 0.57 6.44 -51.93 -0.33 0.23 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.08 1.64 7.43 -51.92 -0.39 1.26 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 36 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 37 H 0.10 0.84 6.96 -51.93 -0.36 0.48 16 38 H 0.09 0.82 6.40 -51.93 -0.33 0.49 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.55 7.67 -51.93 -0.40 0.15 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.47 7.74 -51.93 -0.40 0.07 16 47 H 0.08 0.67 7.14 -51.93 -0.37 0.30 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -37.96 387.61 -7.26 -45.22 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.87 Total: 4.78 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.42 Total: 2.82 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 0.13 Total: -66.05 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.96 -7.26 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754059310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.683 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds