Wall clock time and date at job start Tue Mar 31 2020 09:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 C 1.52996 * 109.47341 * 120.00282 * 2 1 3 5 5 C 1.53008 * 109.47261 * 71.13122 * 4 2 1 6 6 C 1.52996 * 110.00059 * 178.42031 * 5 4 2 7 7 C 1.54324 * 109.88421 * 57.32114 * 5 4 2 8 8 C 1.55155 * 102.94227 * 218.39338 * 7 5 4 9 9 C 1.54699 * 101.67685 * 35.33748 * 8 7 5 10 10 N 1.47025 * 109.87904 * 299.51579 * 5 4 2 11 11 C 1.34776 * 125.64524 * 298.32038 * 10 5 4 12 12 O 1.21586 * 120.00476 * 355.19016 * 11 10 5 13 13 N 1.34780 * 120.00003 * 175.18625 * 11 10 5 14 14 C 1.46494 * 120.00511 * 184.87388 * 13 11 10 15 15 C 1.52996 * 109.47639 * 175.06353 * 14 13 11 16 16 C 1.50698 * 115.55255 * 280.81721 * 15 14 13 17 17 H 1.08002 * 120.00280 * 143.45796 * 16 15 14 18 18 C 1.37880 * 119.99831 * 323.46085 * 16 15 14 19 19 N 1.31510 * 120.00170 * 170.12223 * 18 16 15 20 20 Si 1.86805 * 120.00010 * 350.12408 * 18 16 15 21 21 H 1.48501 * 109.46877 * 95.88647 * 20 18 16 22 22 H 1.48491 * 109.47445 * 215.88783 * 20 18 16 23 23 H 1.48507 * 109.46797 * 335.89091 * 20 18 16 24 24 C 1.52996 * 117.49986 * 135.10339 * 15 14 13 25 25 C 1.52993 * 60.00221 * 252.51303 * 24 15 14 26 26 H 1.08998 * 109.47037 * 295.63213 * 1 2 3 27 27 H 1.08998 * 109.47441 * 55.64130 * 1 2 3 28 28 H 1.09006 * 109.47181 * 175.63706 * 1 2 3 29 29 H 1.09007 * 109.47013 * 240.00280 * 2 1 3 30 30 H 1.08996 * 109.47380 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47395 * 300.00889 * 3 2 1 32 32 H 1.09007 * 109.46866 * 60.00190 * 3 2 1 33 33 H 1.08990 * 109.47343 * 311.12814 * 4 2 1 34 34 H 1.09005 * 109.47544 * 191.12425 * 4 2 1 35 35 H 1.09001 * 109.47113 * 184.79819 * 6 5 4 36 36 H 1.08998 * 109.46875 * 304.79653 * 6 5 4 37 37 H 1.08998 * 109.46899 * 64.79835 * 6 5 4 38 38 H 1.09006 * 110.71715 * 336.75554 * 7 5 4 39 39 H 1.08996 * 110.71980 * 100.02670 * 7 5 4 40 40 H 1.09001 * 111.00373 * 153.57310 * 8 7 5 41 41 H 1.08994 * 111.00544 * 277.38820 * 8 7 5 42 42 H 1.08998 * 110.38743 * 204.36205 * 9 8 7 43 43 H 1.09000 * 110.23777 * 82.11343 * 9 8 7 44 44 H 0.97001 * 119.99767 * 4.87842 * 13 11 10 45 45 H 1.09004 * 109.47198 * 295.06884 * 14 13 11 46 46 H 1.09004 * 109.47023 * 55.06419 * 14 13 11 47 47 H 0.97004 * 119.99830 * 179.97438 * 19 18 16 48 48 H 1.09007 * 117.49958 * 0.02562 * 24 15 14 49 49 H 1.09005 * 117.49926 * 145.02173 * 24 15 14 50 50 H 1.09000 * 117.50502 * 252.50972 * 25 24 15 51 51 H 1.09006 * 117.51786 * 107.48356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7702 -2.2216 1.1177 6 6 2.3110 -2.9600 2.3437 7 6 2.4414 -2.7656 -0.1610 8 6 1.4028 -3.7896 -0.6900 9 6 0.0679 -3.1046 -0.3132 10 7 0.3253 -2.4602 0.9874 11 6 -0.6086 -2.1470 1.9073 12 8 -0.2726 -1.7007 2.9873 13 7 -1.9151 -2.3282 1.6301 14 6 -2.9346 -1.8892 2.5861 15 6 -4.3244 -2.0970 1.9810 16 6 -4.7662 -1.0492 0.9922 17 1 -5.3510 -1.3329 0.1297 18 6 -4.4237 0.2719 1.1885 19 7 -4.6368 1.1548 0.2375 20 14 -3.6567 0.8076 2.8055 21 1 -2.1783 0.8328 2.6677 22 1 -4.1442 2.1649 3.1589 23 1 -4.0379 -0.1494 3.8751 24 6 -5.3973 -2.7232 2.8741 25 6 -4.7797 -3.5369 1.7352 26 1 -0.3633 0.4446 0.9265 27 1 -0.3634 0.5800 -0.8483 28 1 -0.3634 -1.0247 -0.0782 29 1 1.8933 -0.5138 -0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.5239 -0.3350 2.1280 34 1 3.1118 -0.5528 1.3539 35 1 2.1912 -4.0342 2.2031 36 1 3.3678 -2.7259 2.4718 37 1 1.7593 -2.6458 3.2297 38 1 2.5975 -1.9656 -0.8848 39 1 3.3830 -3.2599 0.0782 40 1 1.4899 -3.9121 -1.7696 41 1 1.5044 -4.7478 -0.1807 42 1 -0.7259 -3.8457 -0.2190 43 1 -0.1967 -2.3572 -1.0612 44 1 -2.1803 -2.7494 0.7975 45 1 -2.8470 -2.4712 3.5036 46 1 -2.7906 -0.8324 2.8111 47 1 -4.3962 2.0843 0.3758 48 1 -5.1131 -2.9867 3.8930 49 1 -6.4230 -2.3770 2.7468 50 1 -5.3991 -3.7262 0.8584 51 1 -4.0890 -4.3361 2.0042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458735607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:21 Heat of formation + Delta-G solvation = 14.381380 kcal Electronic energy + Delta-G solvation = -28634.935756 eV Core-core repulsion = 25149.961504 eV Total energy + Delta-G solvation = -3484.974251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83892 -38.24723 -36.80763 -35.15835 -33.57442 -32.23923 -31.78912 -31.28283 -27.06627 -26.86025 -26.47117 -25.43452 -24.91670 -22.45822 -21.55851 -20.87541 -20.00726 -19.47603 -18.56686 -17.29284 -16.55452 -16.20636 -15.73645 -15.35583 -14.62997 -14.56074 -14.22974 -13.68872 -13.52322 -13.45938 -13.32984 -13.18552 -12.96771 -12.77771 -12.46819 -12.36150 -12.02203 -11.96063 -11.86224 -11.78910 -11.32336 -11.14653 -11.03778 -10.93227 -10.70176 -10.61684 -10.41819 -10.40884 -10.23385 -10.09954 -9.96815 -9.62989 -9.38761 -9.30072 -8.91387 -8.44746 -8.35729 -7.96353 -6.19594 -4.15332 2.96778 3.34510 3.42064 3.44947 3.71993 4.31067 4.36080 4.52452 4.62181 4.82351 4.87821 4.99337 5.09240 5.17404 5.25163 5.33930 5.42644 5.49862 5.58101 5.65318 5.65380 5.67787 5.78951 5.81477 5.85859 5.88500 5.94908 5.96694 6.03061 6.13584 6.15750 6.19865 6.22595 6.25243 6.32818 6.39010 6.43083 6.47444 6.55008 6.62171 6.68025 6.77667 6.89151 6.91408 7.07581 7.22223 7.51799 7.66776 8.41355 8.52385 8.83343 9.13760 9.44746 10.91496 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.005972 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.797563 B = 4687.550028 C = 5458.226318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.186 3.814 6 C -0.157 4.157 7 C -0.130 4.130 8 C -0.129 4.129 9 C 0.092 3.908 10 N -0.627 5.627 11 C 0.725 3.275 12 O -0.594 6.594 13 N -0.723 5.723 14 C 0.169 3.831 15 C -0.007 4.007 16 C -0.486 4.486 17 H 0.079 0.921 18 C 0.083 3.917 19 N -0.886 5.886 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.301 1.301 23 H -0.266 1.266 24 C -0.198 4.198 25 C -0.188 4.188 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.398 0.602 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.266 0.734 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -8.343 -2.631 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.160 4.160 5 C 0.101 3.899 6 C -0.216 4.216 7 C -0.167 4.167 8 C -0.167 4.167 9 C -0.031 4.031 10 N -0.367 5.367 11 C 0.428 3.572 12 O -0.473 6.473 13 N -0.376 5.376 14 C 0.046 3.954 15 C -0.008 4.008 16 C -0.523 4.523 17 H 0.097 0.903 18 C -0.121 4.121 19 N -0.521 5.521 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.230 1.230 23 H -0.192 1.192 24 C -0.237 4.237 25 C -0.225 4.225 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.233 0.767 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.103 0.897 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.831 -7.762 -1.829 16.839 hybrid contribution 0.123 0.248 0.450 0.528 sum 14.954 -7.514 -1.379 16.793 Atomic orbital electron populations 1.22372 0.94230 1.03991 1.01587 1.21149 0.96861 0.95391 0.97646 1.21844 0.99984 0.96708 1.01776 1.22006 1.00511 0.94029 0.99490 1.20713 0.79302 0.94831 0.95055 1.22178 1.00516 0.99673 0.99192 1.22872 0.98259 0.98974 0.96629 1.22674 0.94237 0.98428 1.01334 1.22337 0.98038 0.96554 0.86156 1.47686 1.06179 1.65076 1.17741 1.15377 0.80469 0.78532 0.82849 1.90837 1.80606 1.52821 1.23053 1.45111 1.03409 1.64942 1.24183 1.21219 0.86135 0.98243 0.89771 1.19569 0.89747 0.93107 0.98378 1.20273 1.34723 0.89689 1.07593 0.90314 1.24943 0.94569 0.96566 0.96036 1.69893 1.47114 1.03189 1.31950 0.86877 0.79426 0.76663 0.85050 1.20096 1.23009 1.19151 1.23123 1.00015 1.06761 0.93779 1.22764 1.04423 0.94942 1.00380 0.93104 0.93605 0.89968 0.91355 0.93263 0.92888 0.92918 0.90304 0.91762 0.92961 0.92437 0.90423 0.89793 0.90312 0.90036 0.90861 0.90963 0.90770 0.76722 0.93443 0.92618 0.92429 0.91192 0.89310 0.89745 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 7.76 37.15 0.29 -2.64 16 2 C -0.09 -1.29 2.75 -90.63 -0.25 -1.54 16 3 C -0.15 -1.90 9.17 37.16 0.34 -1.56 16 4 C -0.12 -1.72 3.87 -26.73 -0.10 -1.83 16 5 C 0.19 2.44 0.54 -130.84 -0.07 2.37 16 6 C -0.16 -2.04 8.44 37.16 0.31 -1.73 16 7 C -0.13 -1.24 5.80 -24.90 -0.14 -1.39 16 8 C -0.13 -1.16 7.07 -24.70 -0.17 -1.33 16 9 C 0.09 1.11 5.73 -2.65 -0.02 1.09 16 10 N -0.63 -9.53 1.40 -161.58 -0.23 -9.76 16 11 C 0.73 14.19 6.04 -86.92 -0.53 13.67 16 12 O -0.59 -13.59 13.88 5.29 0.07 -13.52 16 13 N -0.72 -14.42 5.47 -65.23 -0.36 -14.77 16 14 C 0.17 3.83 4.45 -4.05 -0.02 3.81 16 15 C -0.01 -0.15 1.25 -155.67 -0.20 -0.35 16 16 C -0.49 -13.04 9.58 -34.44 -0.33 -13.37 16 17 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 18 C 0.08 2.33 5.44 -17.82 -0.10 2.23 16 19 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 20 Si 0.89 22.98 24.31 -169.99 -4.13 18.85 16 21 H -0.27 -7.34 6.98 56.52 0.39 -6.94 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.27 -6.66 6.48 56.52 0.37 -6.29 16 24 C -0.20 -4.07 9.88 -26.74 -0.26 -4.34 16 25 C -0.19 -3.61 9.89 -26.73 -0.26 -3.87 16 26 H 0.05 1.09 7.99 -51.93 -0.42 0.68 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.43 2.33 -51.93 -0.12 1.31 16 29 H 0.07 0.83 5.62 -51.93 -0.29 0.54 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.41 6.93 -51.93 -0.36 1.05 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.27 6.44 -51.93 -0.33 0.93 16 38 H 0.08 0.77 5.51 -51.93 -0.29 0.49 16 39 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.82 7.42 -51.93 -0.39 0.44 16 43 H 0.07 0.92 6.62 -51.93 -0.34 0.58 16 44 H 0.40 7.25 7.00 -40.82 -0.29 6.97 16 45 H 0.05 1.04 7.96 -51.93 -0.41 0.63 16 46 H 0.06 1.41 1.79 -51.93 -0.09 1.32 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 49 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 50 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 51 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -31.19 372.84 -8.59 -39.78 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.83 Total: 10.04 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.51 Total: -10.77 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.19 Total: -49.99 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.13 Total: 18.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.19 -8.59 -39.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458735607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.157 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds