Wall clock time and date at job start Tue Mar 31 2020 09:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47432 * 2 1 4 4 C 1.53007 * 109.46877 * 120.00020 * 2 1 3 5 5 C 1.52999 * 115.54933 * 296.04274 * 4 2 1 6 6 C 1.53000 * 117.51861 * 81.74372 * 4 2 1 7 7 C 1.52997 * 117.49789 * 150.37490 * 4 2 1 8 8 H 1.09009 * 117.49500 * 144.99737 * 7 4 2 9 9 C 1.50697 * 117.50018 * 359.97438 * 7 4 2 10 10 O 1.21282 * 120.00094 * 24.96337 * 9 7 4 11 11 N 1.34777 * 119.99632 * 204.95933 * 9 7 4 12 12 C 1.46509 * 119.99658 * 179.97438 * 11 9 7 13 13 H 1.08994 * 109.46864 * 35.00345 * 12 11 9 14 14 C 1.52999 * 109.46983 * 155.00244 * 12 11 9 15 15 C 1.52997 * 109.47026 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47062 * 299.99771 * 15 14 12 17 17 H 1.09003 * 109.47048 * 300.00186 * 16 15 14 18 18 N 1.46501 * 109.46968 * 180.02562 * 16 15 14 19 19 C 1.36935 * 119.99753 * 155.00567 * 18 16 15 20 20 H 1.07997 * 120.00630 * 359.97438 * 19 18 16 21 21 C 1.38821 * 119.99877 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99673 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47599 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46774 * 120.00397 * 23 21 19 26 26 H 1.48503 * 109.46966 * 239.99481 * 23 21 19 27 27 C 1.52999 * 109.47013 * 60.00221 * 16 15 14 28 28 C 1.52997 * 109.47026 * 299.99801 * 27 16 15 29 29 H 1.08998 * 109.46737 * 60.00299 * 1 2 3 30 30 H 1.08994 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47242 * 300.00143 * 1 2 3 32 32 H 1.08999 * 109.47242 * 239.99857 * 2 1 3 33 33 H 1.09004 * 109.47718 * 171.70652 * 3 2 1 34 34 H 1.09001 * 109.47218 * 291.71199 * 3 2 1 35 35 H 1.09009 * 109.47308 * 51.70730 * 3 2 1 36 36 H 1.09002 * 109.47480 * 274.33278 * 5 4 2 37 37 H 1.08998 * 109.47022 * 154.32937 * 5 4 2 38 38 H 1.08999 * 109.47104 * 34.33145 * 5 4 2 39 39 H 1.09000 * 117.49808 * 214.97013 * 6 4 2 40 40 H 1.08994 * 117.49673 * 359.97438 * 6 4 2 41 41 H 0.96995 * 120.00455 * 0.02562 * 11 9 7 42 42 H 1.09003 * 109.47329 * 300.00058 * 14 12 11 43 43 H 1.09003 * 109.47242 * 60.00021 * 14 12 11 44 44 H 1.08991 * 109.47535 * 60.00163 * 15 14 12 45 45 H 1.09006 * 109.46958 * 180.02562 * 15 14 12 46 46 H 0.96993 * 120.00141 * 334.99537 * 18 16 15 47 47 H 0.97002 * 120.00271 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47242 * 60.00083 * 27 16 15 49 49 H 1.09003 * 109.47329 * 180.02562 * 27 16 15 50 50 H 1.08999 * 109.47785 * 299.99995 * 28 27 16 51 51 H 1.09003 * 109.47416 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6885 -0.0593 2.5831 6 6 2.0919 -2.2499 1.2113 7 6 3.3877 -1.4387 1.1502 8 1 4.0239 -1.4390 2.0353 9 6 4.1110 -1.3813 -0.1706 10 8 3.9010 -0.4657 -0.9378 11 7 4.9913 -2.3475 -0.4993 12 6 5.6941 -2.2920 -1.7836 13 1 5.9006 -1.2530 -2.0401 14 6 7.0115 -3.0628 -1.6777 15 6 7.7458 -3.0043 -3.0187 16 6 6.8726 -3.6338 -4.1061 17 1 6.6661 -4.6729 -3.8499 18 7 7.5760 -3.5783 -5.3900 19 6 7.2776 -4.4830 -6.3737 20 1 6.5241 -5.2376 -6.2030 21 6 7.9436 -4.4302 -7.5906 22 7 8.8615 -3.5102 -7.7988 23 14 7.5370 -5.6647 -8.9322 24 1 6.4782 -6.5880 -8.4510 25 1 7.0558 -4.9443 -10.1383 26 1 8.7545 -6.4435 -9.2737 27 6 5.5552 -2.8630 -4.2120 28 6 4.8210 -2.9215 -2.8710 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1200 1.4461 0.1482 34 1 1.8028 1.9117 -0.9548 35 1 1.5608 1.9974 0.8066 36 1 2.4359 0.6976 2.8213 37 1 1.6718 -0.8135 3.3698 38 1 0.7074 0.4097 2.5086 39 1 1.8756 -2.7840 2.1366 40 1 1.7623 -2.7421 0.2964 41 1 5.1591 -3.0799 0.1141 42 1 7.6338 -2.6141 -0.9034 43 1 6.8050 -4.1018 -1.4211 44 1 7.9524 -1.9653 -3.2749 45 1 8.6842 -3.5538 -2.9434 46 1 8.2529 -2.9008 -5.5434 47 1 9.3267 -3.4730 -8.6492 48 1 5.7618 -1.8239 -4.4682 49 1 4.9329 -3.3117 -4.9863 50 1 4.6144 -3.9606 -2.6147 51 1 3.8826 -2.3720 -2.9462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034767621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:15 Heat of formation + Delta-G solvation = -31.806507 kcal Electronic energy + Delta-G solvation = -26267.463821 eV Core-core repulsion = 22780.486713 eV Total energy + Delta-G solvation = -3486.977108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61524 -38.76161 -37.30335 -34.80298 -33.72277 -32.85084 -30.62991 -30.38679 -28.85964 -27.40722 -27.16483 -24.42700 -23.25918 -22.77294 -22.31865 -21.02801 -20.29446 -19.49758 -18.60902 -17.17178 -16.81252 -16.23496 -15.67058 -15.23680 -14.85762 -14.57013 -14.05407 -13.83945 -13.77999 -13.68159 -13.50470 -13.29107 -13.02038 -12.89389 -12.55832 -12.46402 -12.18012 -12.02550 -12.00739 -11.79620 -11.47299 -11.37395 -11.18645 -11.02190 -10.81984 -10.79075 -10.70823 -10.60059 -10.22989 -10.12595 -10.09284 -9.99684 -9.72456 -9.64621 -9.45019 -8.90620 -8.82398 -6.92230 -5.74101 -3.02376 2.54463 3.04905 3.44478 3.48002 3.50095 3.52314 4.32751 4.44841 4.50935 4.61156 4.74337 4.87437 5.01116 5.06968 5.14068 5.21184 5.29964 5.31401 5.39809 5.43647 5.52418 5.53960 5.62965 5.63691 5.68688 5.70434 5.72787 5.75828 5.81921 5.87747 5.89941 5.91260 5.94410 6.05054 6.17842 6.26234 6.29140 6.32369 6.41783 6.45107 6.51003 6.59807 6.70164 6.74776 7.01084 7.17125 7.53120 7.72987 8.26527 8.44847 9.55789 10.14716 10.49207 11.48809 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.002565 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.914935 B =10912.083460 C =11302.223716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.116 4.116 6 C -0.154 4.154 7 C -0.185 4.185 8 H 0.124 0.876 9 C 0.539 3.461 10 O -0.526 6.526 11 N -0.723 5.723 12 C 0.146 3.854 13 H 0.087 0.913 14 C -0.118 4.118 15 C -0.120 4.120 16 C 0.178 3.822 17 H 0.045 0.955 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.132 4.132 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.397 0.603 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 4.736 23.835 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.187 4.187 4 C -0.084 4.084 5 C -0.173 4.173 6 C -0.191 4.191 7 C -0.206 4.206 8 H 0.142 0.858 9 C 0.325 3.675 10 O -0.402 6.402 11 N -0.373 5.373 12 C 0.042 3.958 13 H 0.105 0.895 14 C -0.157 4.157 15 C -0.159 4.159 16 C 0.068 3.932 17 H 0.063 0.937 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.173 4.173 28 C -0.161 4.161 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.230 0.770 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.650 5.258 23.150 27.384 hybrid contribution 0.202 -0.894 -0.541 1.064 sum -13.448 4.364 22.609 26.666 Atomic orbital electron populations 1.21876 0.95751 1.01371 1.01410 1.20770 0.94244 0.96874 0.95934 1.21644 1.01720 0.94832 1.00471 1.21549 0.96245 0.93148 0.97455 1.21379 1.01954 1.00319 0.93670 1.23182 0.98034 0.94184 1.03729 1.22379 0.91663 1.09063 0.97535 0.85835 1.19648 0.79199 0.81830 0.86846 1.90703 1.63290 1.34191 1.52029 1.46165 1.43535 1.26834 1.20744 1.21094 0.91381 1.01172 0.82161 0.89530 1.21743 0.95129 1.00137 0.98687 1.21751 0.98991 1.01676 0.93514 1.20232 0.90238 0.96458 0.86296 0.93664 1.42440 1.45443 1.37916 1.10801 1.19287 1.16738 1.07782 0.92856 0.91200 1.24742 0.99186 0.99130 0.98078 1.69670 1.28179 1.35867 1.24481 0.86143 0.77380 0.80574 0.82274 1.20597 1.21912 1.21929 1.22218 0.98825 1.01502 0.94737 1.21881 0.98556 1.00093 0.95608 0.92746 0.93021 0.92919 0.89321 0.91929 0.93218 0.93960 0.92035 0.92530 0.91544 0.88021 0.88403 0.76954 0.91966 0.91636 0.91996 0.91410 0.78320 0.93611 0.92526 0.91886 0.92433 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.03 37.16 0.34 -0.94 16 2 C -0.06 -0.62 1.96 -90.62 -0.18 -0.80 16 3 C -0.13 -1.39 8.24 37.16 0.31 -1.08 16 4 C -0.08 -0.71 1.62 -154.51 -0.25 -0.96 16 5 C -0.12 -0.79 8.97 37.16 0.33 -0.45 16 6 C -0.15 -1.16 9.60 -26.73 -0.26 -1.42 16 7 C -0.19 -1.62 5.90 -91.77 -0.54 -2.16 16 8 H 0.12 0.87 8.14 -51.92 -0.42 0.45 16 9 C 0.54 6.36 7.16 -10.99 -0.08 6.28 16 10 O -0.53 -8.01 11.94 5.56 0.07 -7.95 16 11 N -0.72 -7.70 5.08 -53.80 -0.27 -7.98 16 12 C 0.15 1.92 2.45 -67.93 -0.17 1.75 16 13 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 14 C -0.12 -1.47 5.39 -26.73 -0.14 -1.61 16 15 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 16 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.73 -18.24 5.12 -53.42 -0.27 -18.51 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.90 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C -0.13 -2.42 5.50 -26.73 -0.15 -2.57 16 28 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.40 6.66 -51.93 -0.35 0.05 16 32 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 33 H 0.06 0.77 7.03 -51.93 -0.37 0.41 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.38 7.76 -51.92 -0.40 -0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 38 H 0.07 0.43 6.49 -51.93 -0.34 0.09 16 39 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 50 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -31.40 392.94 -9.90 -41.30 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -9.53 Total: 9.35 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.51 Total: -11.97 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.18 Total: -54.22 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.40 -9.90 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034767621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.494 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds