Wall clock time and date at job start Tue Mar 31 2020 09:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47487 * 2 1 4 4 C 1.53008 * 109.46823 * 119.99579 * 2 1 3 5 5 C 1.53001 * 109.47086 * 59.99822 * 4 2 1 6 6 C 1.53002 * 109.47204 * 300.00223 * 4 2 1 7 7 C 1.50698 * 109.47199 * 180.02562 * 4 2 1 8 8 O 1.21280 * 119.99990 * 346.21255 * 7 4 2 9 9 N 1.34776 * 120.00146 * 166.22198 * 7 4 2 10 10 C 1.45734 * 117.75874 * 5.16507 * 9 7 4 11 11 C 1.53055 * 109.55606 * 141.11127 * 10 9 7 12 12 C 1.52938 * 108.49529 * 53.80324 * 11 10 9 13 13 C 1.53549 * 109.73175 * 293.98553 * 12 11 10 14 14 H 1.08998 * 111.61717 * 293.31905 * 13 12 11 15 15 C 1.44191 * 117.76138 * 185.18822 * 9 7 4 16 16 H 1.08999 * 109.22375 * 332.63156 * 15 9 7 17 17 C 1.54064 * 111.76513 * 93.53580 * 15 9 7 18 18 C 1.54058 * 103.74213 * 153.26014 * 17 15 9 19 19 N 1.46880 * 107.70742 * 342.86549 * 18 17 15 20 20 C 1.36935 * 125.58075 * 177.03136 * 19 18 17 21 21 H 1.08004 * 119.99927 * 199.37738 * 20 19 18 22 22 C 1.38812 * 120.00133 * 19.38205 * 20 19 18 23 23 N 1.31614 * 119.99783 * 191.43679 * 22 20 19 24 24 Si 1.86799 * 120.00035 * 11.43127 * 22 20 19 25 25 H 1.48497 * 109.46903 * 55.09631 * 24 22 20 26 26 H 1.48498 * 109.47384 * 175.09943 * 24 22 20 27 27 H 1.48502 * 109.46980 * 295.09975 * 24 22 20 28 28 H 1.08994 * 109.47379 * 300.00795 * 1 2 3 29 29 H 1.09001 * 109.46164 * 60.00666 * 1 2 3 30 30 H 1.08994 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47718 * 239.98949 * 2 1 3 32 32 H 1.08994 * 109.46937 * 59.99195 * 3 2 1 33 33 H 1.08995 * 109.47002 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46485 * 299.99568 * 3 2 1 35 35 H 1.08999 * 109.46780 * 174.19190 * 5 4 2 36 36 H 1.08999 * 109.47413 * 294.19977 * 5 4 2 37 37 H 1.09007 * 109.46988 * 54.19619 * 5 4 2 38 38 H 1.09001 * 109.46625 * 300.00092 * 6 4 2 39 39 H 1.08997 * 109.47051 * 59.99408 * 6 4 2 40 40 H 1.08994 * 109.47089 * 180.02562 * 6 4 2 41 41 H 1.08999 * 109.45798 * 261.13905 * 10 9 7 42 42 H 1.08999 * 109.45417 * 21.10178 * 10 9 7 43 43 H 1.09001 * 109.62871 * 173.50984 * 11 10 9 44 44 H 1.08999 * 109.62959 * 293.89605 * 11 10 9 45 45 H 1.08998 * 109.41954 * 54.10599 * 12 11 10 46 46 H 1.08997 * 109.41900 * 173.97637 * 12 11 10 47 47 H 1.09001 * 110.57377 * 34.69403 * 17 15 9 48 48 H 1.09002 * 110.57148 * 271.82394 * 17 15 9 49 49 H 1.09000 * 109.80853 * 223.31151 * 18 17 15 50 50 H 1.09006 * 109.86456 * 102.44427 * 18 17 15 51 51 H 0.96995 * 120.00912 * 5.22644 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5299 -2.1637 1.2495 6 6 1.5299 0.0001 2.4986 7 6 3.5469 -0.7207 1.2498 8 8 4.1535 -0.4272 0.2414 9 7 4.2207 -1.0466 2.3707 10 6 3.4476 -1.5021 3.5190 11 6 4.1944 -2.6388 4.2211 12 6 5.6106 -2.1612 4.5456 13 6 6.3892 -1.9251 3.2434 14 1 6.5652 -2.8570 2.7062 15 6 5.6569 -0.9204 2.3517 16 1 6.0145 -1.0434 1.3294 17 6 6.1171 0.4490 2.8871 18 6 7.5310 0.1722 3.4328 19 7 7.6698 -1.2807 3.5974 20 6 8.8030 -1.9316 4.0066 21 1 8.9224 -2.9860 3.8057 22 6 9.7981 -1.2361 4.6796 23 7 10.9742 -1.7940 4.8742 24 14 9.4682 0.4914 5.3088 25 1 8.2651 0.4797 6.1793 26 1 10.6391 0.9662 6.0890 27 1 9.2378 1.4017 4.1583 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8935 -0.5140 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.9756 -2.7066 2.0830 36 1 0.4449 -2.1654 1.3533 37 1 1.8059 -2.6467 0.3121 38 1 1.8932 1.0278 2.4985 39 1 0.4399 0.0002 2.4984 40 1 1.8935 -0.5134 3.3886 41 1 3.3091 -0.6745 4.2147 42 1 2.4747 -1.8604 3.1827 43 1 3.6764 -2.9026 5.1432 44 1 4.2391 -3.5078 3.5647 45 1 5.5586 -1.2311 5.1115 46 1 6.1212 -2.9189 5.1400 47 1 5.4580 0.7891 3.6859 48 1 6.1543 1.1824 2.0815 49 1 7.6587 0.6671 4.3955 50 1 8.2781 0.5372 2.7279 51 1 11.1715 -2.6592 4.4826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049494021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:32 Heat of formation + Delta-G solvation = 12.798377 kcal Electronic energy + Delta-G solvation = -28447.282923 eV Core-core repulsion = 24962.240027 eV Total energy + Delta-G solvation = -3485.042895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31871 -38.83834 -36.76969 -35.85081 -32.75496 -32.69863 -31.47842 -29.28381 -28.95980 -28.01844 -26.98813 -25.37439 -23.99228 -23.43150 -22.04177 -21.57114 -20.40147 -18.74255 -18.40506 -17.44089 -16.72886 -16.15870 -15.50959 -15.31480 -15.05121 -14.83399 -14.35010 -14.10955 -13.91699 -13.69006 -13.60370 -13.24325 -13.04860 -12.64478 -12.50362 -12.38818 -12.34172 -11.98631 -11.96355 -11.90319 -11.69432 -11.47027 -11.44921 -11.10042 -11.00029 -10.92957 -10.73512 -10.59334 -10.54142 -10.27984 -10.11183 -9.92342 -9.35873 -9.26308 -9.03385 -8.70245 -8.35220 -7.03319 -6.31815 -3.28633 2.70204 3.08468 3.44090 3.49010 3.72170 4.26292 4.44786 4.61565 4.61988 4.73175 4.90408 4.99510 5.04627 5.10163 5.11940 5.14956 5.21974 5.28545 5.32362 5.35708 5.47365 5.48454 5.52017 5.57784 5.59285 5.61973 5.70340 5.74779 5.80259 5.84251 5.85778 5.89512 5.96330 5.98036 6.03945 6.08026 6.18425 6.27573 6.29160 6.33994 6.45991 6.47387 6.66093 6.76122 6.84797 6.97478 7.50365 7.73696 8.30319 8.34506 9.02955 9.53200 10.22252 11.18313 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.004185 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.063449 B = 6689.166270 C = 7078.245568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.151 4.151 6 C -0.181 4.181 7 C 0.517 3.483 8 O -0.537 6.537 9 N -0.585 5.585 10 C 0.089 3.911 11 C -0.136 4.136 12 C -0.130 4.130 13 C 0.161 3.839 14 H 0.060 0.940 15 C 0.135 3.865 16 H 0.095 0.905 17 C -0.136 4.136 18 C 0.117 3.883 19 N -0.603 5.603 20 C -0.318 4.318 21 H 0.075 0.925 22 C -0.016 4.016 23 N -0.929 5.929 24 Si 1.072 2.928 25 H -0.297 1.297 26 H -0.302 1.302 27 H -0.287 1.287 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.026 0.974 50 H 0.045 0.955 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.284 2.275 -4.907 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.212 4.212 4 C -0.079 4.079 5 C -0.208 4.208 6 C -0.237 4.237 7 C 0.305 3.695 8 O -0.413 6.413 9 N -0.317 5.317 10 C -0.033 4.033 11 C -0.175 4.175 12 C -0.170 4.170 13 C 0.053 3.947 14 H 0.078 0.922 15 C 0.030 3.970 16 H 0.113 0.887 17 C -0.175 4.175 18 C -0.008 4.008 19 N -0.329 5.329 20 C -0.446 4.446 21 H 0.093 0.907 22 C -0.216 4.216 23 N -0.569 5.569 24 Si 0.906 3.094 25 H -0.225 1.225 26 H -0.230 1.230 27 H -0.215 1.215 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.063 0.937 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.141 3.616 -4.528 23.856 hybrid contribution -0.643 -1.226 -0.732 1.566 sum -23.785 2.390 -5.260 24.476 Atomic orbital electron populations 1.21965 0.95115 1.01745 1.01830 1.20883 0.95005 0.96527 0.96436 1.21996 1.02950 0.95240 1.01031 1.20753 0.91669 0.97489 0.97941 1.22099 1.01798 0.93917 1.02955 1.22764 1.01951 1.01544 0.97461 1.20660 0.89674 0.76348 0.82803 1.90652 1.70177 1.48070 1.32425 1.46962 1.06413 1.65346 1.12942 1.22303 0.95452 0.97237 0.88285 1.21921 0.97608 0.97681 1.00260 1.22164 0.93426 1.01595 0.99788 1.21076 0.86401 0.94575 0.92681 0.92215 1.20999 0.78624 0.95682 1.01668 0.88737 1.22680 0.97306 0.97241 1.00290 1.21822 0.94435 0.86980 0.97532 1.44838 1.08309 1.00397 1.79381 1.20117 0.94026 0.95473 1.34956 0.90719 1.25950 0.93297 1.05254 0.97105 1.70887 1.20749 1.18948 1.46358 0.83778 0.73459 0.76021 0.76146 1.22550 1.23038 1.21471 0.92372 0.92686 0.92485 0.90487 0.92994 0.91045 0.93017 0.91213 0.91067 0.91865 0.91818 0.91431 0.89327 0.91639 0.87913 0.90992 0.91625 0.92123 0.91476 0.91682 0.91169 0.95650 0.93708 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.49 37.16 0.32 -0.81 16 2 C -0.07 -0.70 1.90 -90.61 -0.17 -0.88 16 3 C -0.16 -1.70 8.53 37.16 0.32 -1.38 16 4 C -0.08 -0.76 0.30 -155.66 -0.05 -0.81 16 5 C -0.15 -1.26 7.63 37.16 0.28 -0.98 16 6 C -0.18 -1.51 7.21 37.16 0.27 -1.24 16 7 C 0.52 7.35 5.85 -10.99 -0.06 7.28 16 8 O -0.54 -9.53 13.56 5.56 0.08 -9.45 16 9 N -0.59 -8.34 2.79 -167.71 -0.47 -8.81 16 10 C 0.09 0.99 4.02 -4.43 -0.02 0.97 16 11 C -0.14 -1.67 6.10 -26.73 -0.16 -1.83 16 12 C -0.13 -2.23 5.32 -26.48 -0.14 -2.37 16 13 C 0.16 3.19 3.34 -67.01 -0.22 2.97 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.14 2.40 2.74 -68.60 -0.19 2.21 16 16 H 0.09 1.89 7.03 -51.93 -0.37 1.52 16 17 C -0.14 -2.47 6.44 -25.62 -0.17 -2.63 16 18 C 0.12 2.62 4.68 -3.28 -0.02 2.60 16 19 N -0.60 -14.67 2.78 -163.51 -0.45 -15.12 16 20 C -0.32 -9.05 10.53 -15.06 -0.16 -9.21 16 21 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.27 13.70 55.49 0.76 -28.50 16 24 Si 1.07 27.15 24.63 -169.99 -4.19 22.96 16 25 H -0.30 -7.23 6.99 56.52 0.39 -6.83 16 26 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 27 H -0.29 -6.75 5.59 56.52 0.32 -6.44 16 28 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 31 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 32 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 33 H 0.07 0.99 6.03 -51.93 -0.31 0.67 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.56 5.50 -51.93 -0.29 0.28 16 36 H 0.07 0.46 6.75 -51.93 -0.35 0.10 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 39 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 40 H 0.09 0.69 3.39 -51.93 -0.18 0.51 16 41 H 0.07 0.69 7.23 -51.93 -0.38 0.31 16 42 H 0.10 0.89 2.68 -51.93 -0.14 0.75 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.09 8.02 -51.93 -0.42 0.68 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.03 0.60 3.61 -51.93 -0.19 0.41 16 50 H 0.04 1.06 7.31 -51.93 -0.38 0.68 16 51 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -32.49 353.58 -7.76 -40.26 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.55 Total: 0.02 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.27 Total: -6.68 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.16 Total: -52.44 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 27.15 SS G_CDS: -4.19 Total: 22.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.49 -7.76 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049494021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.056 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds