Wall clock time and date at job start Tue Mar 31 2020 09:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47481 * 2 1 4 4 C 1.52999 * 109.47481 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46828 * 59.99614 * 4 3 2 6 6 C 1.52997 * 109.46913 * 299.99827 * 4 3 2 7 7 C 1.50699 * 109.47559 * 179.97438 * 4 3 2 8 8 O 1.21290 * 119.99748 * 0.02562 * 7 4 3 9 9 N 1.34769 * 120.00586 * 180.02562 * 7 4 3 10 10 C 1.46497 * 120.00691 * 179.97438 * 9 7 4 11 11 H 1.09005 * 112.94419 * 26.89742 * 10 9 7 12 12 C 1.53947 * 113.66195 * 255.49633 * 10 9 7 13 13 C 1.53953 * 87.29422 * 220.78978 * 12 10 9 14 14 H 1.09007 * 113.66059 * 270.17347 * 13 12 10 15 15 N 1.46490 * 113.66579 * 139.20604 * 13 12 10 16 16 C 1.36935 * 120.00121 * 106.00898 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.52915 * 86.88217 * 24.68527 * 13 12 10 25 25 C 1.52911 * 121.14042 * 209.42362 * 24 13 12 26 26 C 1.53952 * 86.77817 * 209.38241 * 25 24 13 27 27 C 1.52908 * 121.13264 * 100.86109 * 24 13 12 28 28 H 1.08996 * 109.46889 * 59.99777 * 1 2 3 29 29 H 1.08990 * 109.47541 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46820 * 300.00278 * 1 2 3 31 31 H 1.08999 * 109.47190 * 239.99621 * 2 1 3 32 32 H 1.09003 * 109.47000 * 119.99847 * 2 1 3 33 33 H 1.08999 * 109.47218 * 59.99638 * 3 2 1 34 34 H 1.09003 * 109.46879 * 299.99921 * 3 2 1 35 35 H 1.09000 * 109.46890 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.47435 * 299.99917 * 5 4 3 37 37 H 1.09003 * 109.47140 * 60.00319 * 5 4 3 38 38 H 1.08991 * 109.47344 * 299.99702 * 6 4 3 39 39 H 1.09001 * 109.47493 * 59.99922 * 6 4 3 40 40 H 1.09000 * 109.47052 * 179.97438 * 6 4 3 41 41 H 0.97007 * 119.99900 * 359.97438 * 9 7 4 42 42 H 1.09000 * 113.57953 * 106.18891 * 12 10 9 43 43 H 1.08998 * 113.58352 * 335.39210 * 12 10 9 44 44 H 0.97000 * 120.00577 * 286.01497 * 15 13 12 45 45 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 46 46 H 1.08997 * 113.65893 * 323.85195 * 25 24 13 47 47 H 1.08998 * 113.65925 * 94.91000 * 25 24 13 48 48 H 1.09003 * 113.57773 * 270.13122 * 26 25 24 49 49 H 1.09004 * 113.57692 * 139.34629 * 26 25 24 50 50 H 1.09000 * 113.66471 * 265.09633 * 27 24 13 51 51 H 1.09006 * 113.66324 * 36.06148 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0805 0.7209 -1.2482 6 6 4.0795 0.7214 1.2502 7 6 4.0725 2.8632 0.0000 8 8 3.2844 3.7852 -0.0004 9 7 5.3975 3.1095 -0.0001 10 6 5.8860 4.4907 -0.0013 11 1 5.1836 5.1902 0.4522 12 6 6.4250 4.9542 -1.3668 13 6 7.5617 5.6531 -0.5989 14 1 7.3309 6.6798 -0.3147 15 7 8.8725 5.5200 -1.2392 16 6 9.4300 6.5900 -1.8867 17 1 8.9035 7.5322 -1.9250 18 6 10.6719 6.4638 -2.4940 19 7 11.3133 5.3154 -2.4478 20 14 11.4327 7.9238 -3.3767 21 1 11.0121 7.9151 -4.8009 22 1 10.9779 9.1828 -2.7339 23 1 12.9128 7.8339 -3.2972 24 6 7.3185 4.6378 0.5184 25 6 7.5989 4.9882 1.9802 26 6 7.8925 3.4919 2.1921 27 6 8.2262 3.4195 0.6909 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 5.1705 0.7205 -1.2476 36 1 3.7172 -0.3067 -1.2482 37 1 3.7176 1.2346 -2.1385 38 1 3.7158 1.2354 2.1399 39 1 3.7161 -0.3062 1.2503 40 1 5.1695 0.7210 1.2505 41 1 6.0279 2.3722 0.0006 42 1 5.7607 5.6449 -1.8861 43 1 6.7661 4.1363 -2.0014 44 1 9.3456 4.6739 -1.2046 45 1 10.9184 4.5574 -1.9891 46 1 8.4702 5.6286 2.1170 47 1 6.7215 5.3428 2.5211 48 1 7.0140 2.9105 2.4720 49 1 8.7493 3.3030 2.8389 50 1 7.8501 2.5208 0.2020 51 1 9.2737 3.6187 0.4640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203347607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:06 Heat of formation + Delta-G solvation = -7.315853 kcal Electronic energy + Delta-G solvation = -26907.911925 eV Core-core repulsion = 23421.996811 eV Total energy + Delta-G solvation = -3485.915114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87614 -39.60457 -36.70951 -35.04242 -34.33544 -33.16421 -32.12562 -29.52480 -27.63933 -26.74824 -25.63752 -24.87920 -24.30093 -23.52613 -22.30276 -20.83196 -20.50022 -19.27213 -17.84484 -17.45537 -16.60618 -16.29741 -15.61503 -15.50052 -15.13072 -14.82345 -14.63804 -14.18052 -13.74628 -13.64732 -13.33850 -13.30192 -12.98388 -12.65165 -12.54164 -12.53732 -12.17739 -12.09827 -11.98209 -11.92195 -11.59797 -11.28718 -11.20311 -11.12106 -11.05780 -10.86818 -10.74746 -10.67052 -10.61192 -10.16640 -10.05350 -9.86828 -9.84834 -9.48635 -9.14225 -8.83694 -8.70905 -7.04286 -6.13402 -3.12964 2.71413 3.24606 3.51081 3.55326 3.69263 4.41615 4.47157 4.60127 4.63531 4.66948 4.81679 4.87448 4.89945 4.92401 4.99115 5.05260 5.16067 5.22965 5.32193 5.41385 5.43195 5.46420 5.57321 5.58775 5.60208 5.66505 5.72731 5.76313 5.81092 5.81257 5.85227 5.89115 5.92800 5.96687 6.03152 6.07669 6.12151 6.18106 6.19694 6.21585 6.28109 6.53486 6.54469 6.66457 6.84025 6.99599 7.64812 7.80590 8.32562 8.72509 9.19247 10.05648 10.21008 11.34628 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.003075 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.186595 B = 9104.033480 C = 9503.007142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.521 3.479 8 O -0.545 6.545 9 N -0.710 5.710 10 C 0.146 3.854 11 H 0.109 0.891 12 C -0.174 4.174 13 C 0.187 3.813 14 H 0.080 0.920 15 N -0.718 5.718 16 C -0.332 4.332 17 H 0.066 0.934 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.082 2.918 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.288 1.288 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.398 0.602 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.369 0.631 45 H 0.254 0.746 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 -12.281 8.567 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.307 3.693 8 O -0.422 6.422 9 N -0.361 5.361 10 C 0.041 3.959 11 H 0.127 0.873 12 C -0.216 4.216 13 C 0.075 3.925 14 H 0.098 0.902 15 N -0.358 5.358 16 C -0.463 4.463 17 H 0.084 0.916 18 C -0.242 4.242 19 N -0.589 5.589 20 Si 0.913 3.087 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.214 1.214 24 C -0.127 4.127 25 C -0.159 4.159 26 C -0.176 4.176 27 C -0.147 4.147 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.203 0.797 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.341 -10.849 7.676 20.297 hybrid contribution -0.941 -1.104 0.779 1.646 sum -16.281 -11.953 8.455 21.896 Atomic orbital electron populations 1.21762 0.95883 1.01369 1.01957 1.21684 0.95858 0.96839 1.02163 1.21423 0.91808 0.96538 1.03414 1.20815 0.97553 0.92574 0.97667 1.21922 1.01235 1.00684 0.96223 1.21912 1.01148 1.00729 0.96148 1.20541 0.82445 0.90919 0.75420 1.90676 1.55410 1.46311 1.49779 1.46029 1.06703 1.08996 1.74364 1.22145 0.92874 0.82739 0.98151 0.87309 1.24261 1.00139 1.01155 0.96052 1.21082 0.85946 0.95462 0.90059 0.90222 1.42315 1.17217 1.12451 1.63795 1.20134 1.03334 0.92062 1.30778 0.91624 1.25768 0.94302 1.03279 1.00863 1.70871 1.40306 1.01742 1.46018 0.83202 0.76146 0.73664 0.75700 1.22321 1.22119 1.21417 1.23508 0.94484 0.98725 0.96018 1.22675 1.01506 0.96238 0.95500 1.22827 1.00805 0.97286 0.96677 1.22435 1.00487 0.96184 0.95580 0.92719 0.92893 0.92772 0.91688 0.91748 0.91334 0.91256 0.92167 0.91144 0.91956 0.92094 0.91140 0.92216 0.76649 0.92122 0.90419 0.79665 0.93488 0.89610 0.91992 0.90900 0.91800 0.92495 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -0.96 5.23 -26.73 -0.14 -1.10 16 3 C -0.09 -0.93 3.56 -26.73 -0.10 -1.03 16 4 C -0.08 -0.83 0.64 -155.66 -0.10 -0.93 16 5 C -0.14 -1.27 8.02 37.16 0.30 -0.97 16 6 C -0.14 -1.15 8.02 37.16 0.30 -0.85 16 7 C 0.52 7.14 6.48 -10.99 -0.07 7.07 16 8 O -0.54 -9.54 15.63 5.55 0.09 -9.45 16 9 N -0.71 -9.32 5.09 -53.28 -0.27 -9.59 16 10 C 0.15 2.25 4.08 -67.39 -0.28 1.98 16 11 H 0.11 1.79 7.55 -51.93 -0.39 1.40 16 12 C -0.17 -3.14 7.68 -25.75 -0.20 -3.34 16 13 C 0.19 3.69 4.35 -67.48 -0.29 3.40 16 14 H 0.08 1.62 8.11 -51.92 -0.42 1.20 16 15 N -0.72 -17.40 5.32 -52.99 -0.28 -17.68 16 16 C -0.33 -9.19 9.97 -15.06 -0.15 -9.34 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 18 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 19 N -0.94 -28.71 13.70 55.49 0.76 -27.95 16 20 Si 1.08 25.86 29.92 -169.99 -5.09 20.78 16 21 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.12 -1.96 1.07 -154.61 -0.17 -2.13 16 25 C -0.12 -1.75 7.85 -26.28 -0.21 -1.96 16 26 C -0.14 -1.75 8.08 -25.75 -0.21 -1.96 16 27 C -0.11 -1.60 6.77 -26.29 -0.18 -1.78 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 32 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 36 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 40 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 41 H 0.40 4.56 5.51 -40.82 -0.23 4.33 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.37 9.09 5.00 -40.82 -0.20 8.89 16 45 H 0.25 7.56 6.77 -40.82 -0.28 7.28 16 46 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 51 H 0.09 1.59 6.99 -51.93 -0.36 1.23 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -31.71 388.99 -9.18 -40.89 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -9.03 Total: 12.18 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.21 Total: -15.03 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.21 Total: -55.23 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.71 -9.18 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203347607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.573 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds