Wall clock time and date at job start Tue Mar 31 2020 09:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47359 * 2 1 4 4 C 1.50693 * 109.47124 * 120.00529 * 2 1 3 5 5 O 1.21283 * 120.00489 * 114.18879 * 4 2 1 6 6 N 1.34781 * 120.00070 * 294.18678 * 4 2 1 7 7 C 1.47422 * 125.64476 * 354.48355 * 6 4 2 8 8 C 1.54915 * 104.83118 * 155.90453 * 7 6 4 9 9 C 1.55156 * 101.57885 * 37.01114 * 8 7 6 10 10 C 1.47024 * 125.64820 * 174.52520 * 6 4 2 11 11 H 1.08997 * 109.88172 * 300.59514 * 10 6 4 12 12 C 1.53001 * 109.88204 * 61.60836 * 10 6 4 13 13 N 1.46497 * 109.46712 * 186.01528 * 12 10 6 14 14 C 1.36943 * 119.99746 * 175.36019 * 13 12 10 15 15 H 1.07996 * 119.99721 * 4.93516 * 14 13 12 16 16 C 1.38806 * 119.99731 * 184.93100 * 14 13 12 17 17 N 1.31620 * 119.99990 * 183.34184 * 16 14 13 18 18 Si 1.86802 * 120.00390 * 3.33870 * 16 14 13 19 19 H 1.48502 * 109.47168 * 90.91803 * 18 16 14 20 20 H 1.48500 * 109.47192 * 210.91460 * 18 16 14 21 21 H 1.48502 * 109.46992 * 330.91599 * 18 16 14 22 22 C 1.53005 * 109.46814 * 240.00153 * 2 1 3 23 23 C 1.54895 * 110.75390 * 168.26767 * 22 2 1 24 24 C 1.54464 * 104.09865 * 203.89641 * 23 22 2 25 25 C 1.53866 * 106.68746 * 23.34302 * 24 23 22 26 26 C 1.54269 * 106.59832 * 0.15696 * 25 24 23 27 27 H 1.09005 * 109.47314 * 292.56220 * 1 2 3 28 28 H 1.09003 * 109.47590 * 52.56656 * 1 2 3 29 29 H 1.09007 * 109.47495 * 172.56158 * 1 2 3 30 30 H 1.08995 * 109.47274 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47168 * 300.00747 * 3 2 1 32 32 H 1.09001 * 109.46473 * 60.00223 * 3 2 1 33 33 H 1.08997 * 110.37271 * 274.74195 * 7 6 4 34 34 H 1.09001 * 110.36717 * 37.06943 * 7 6 4 35 35 H 1.08998 * 111.00336 * 155.08042 * 8 7 6 36 36 H 1.09000 * 111.00419 * 278.89879 * 8 7 6 37 37 H 1.09001 * 110.72186 * 206.13139 * 9 8 7 38 38 H 1.09003 * 110.72196 * 82.85897 * 9 8 7 39 39 H 1.08998 * 109.46907 * 66.02138 * 12 10 6 40 40 H 1.08996 * 109.46809 * 306.01454 * 12 10 6 41 41 H 0.97002 * 120.00248 * 355.08684 * 13 12 10 42 42 H 0.96997 * 120.00295 * 180.02562 * 17 16 14 43 43 H 1.08992 * 110.67679 * 291.50023 * 22 2 1 44 44 H 1.08999 * 110.48478 * 322.42088 * 23 22 2 45 45 H 1.08996 * 110.48405 * 85.06590 * 23 22 2 46 46 H 1.08999 * 109.85747 * 264.09912 * 24 23 22 47 47 H 1.09005 * 110.16296 * 142.75230 * 24 23 22 48 48 H 1.08996 * 110.03458 * 240.87467 * 25 24 23 49 49 H 1.09006 * 110.07607 * 119.46519 * 25 24 23 50 50 H 1.09001 * 110.48813 * 217.70828 * 26 25 24 51 51 H 1.09005 * 110.48472 * 95.07187 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.6402 -1.7544 1.1222 6 7 1.8060 -0.1859 2.4511 7 6 1.1863 1.1241 2.7218 8 6 0.5977 0.9969 4.1491 9 6 1.6742 0.1298 4.8538 10 6 2.1372 -0.8249 3.7331 11 1 1.6168 -1.7789 3.8171 12 6 3.6480 -1.0462 3.8292 13 7 3.9534 -1.8102 5.0414 14 6 5.2383 -2.2125 5.2916 15 1 6.0390 -1.8995 4.6380 16 6 5.5113 -3.0225 6.3852 17 7 6.7539 -3.3553 6.6638 18 14 4.1153 -3.6403 7.4618 19 1 3.6377 -4.9500 6.9498 20 1 4.5994 -3.8009 8.8564 21 1 2.9989 -2.6614 7.4348 22 6 2.0399 -0.7213 -1.2493 23 6 3.5599 -0.4886 -1.4354 24 6 3.7916 -0.7065 -2.9470 25 6 2.4410 -0.4589 -3.6412 26 6 1.4345 -0.0951 -2.5301 27 1 -0.3634 0.3943 0.9490 28 1 -0.3634 0.6247 -0.8160 29 1 -0.3634 -1.0191 -0.1330 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.9377 1.9131 2.6904 34 1 0.3936 1.3250 2.0011 35 1 0.5105 1.9739 4.6243 36 1 -0.3653 0.4865 4.1305 37 1 1.2377 -0.4298 5.6812 38 1 2.5021 0.7486 5.1997 39 1 4.1546 -0.0820 3.8703 40 1 3.9904 -1.5997 2.9550 41 1 3.2462 -2.0276 5.6687 42 1 6.9447 -3.9216 7.4278 43 1 1.8158 -1.7866 -1.1971 44 1 3.8274 0.5296 -1.1529 45 1 4.1306 -1.2102 -0.8509 46 1 4.1222 -1.7294 -3.1272 47 1 4.5368 -0.0028 -3.3181 48 1 2.1160 -1.3617 -4.1583 49 1 2.5297 0.3652 -4.3492 50 1 0.4579 -0.5302 -2.7426 51 1 1.3564 0.9871 -2.4256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:59 Heat of formation + Delta-G solvation = -26.872586 kcal Electronic energy + Delta-G solvation = -27473.933969 eV Core-core repulsion = 23987.170812 eV Total energy + Delta-G solvation = -3486.763157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87108 -38.74954 -37.05338 -35.06343 -34.22566 -31.53209 -31.30857 -29.23417 -29.03881 -27.67333 -27.38481 -25.47148 -24.17539 -22.34380 -21.86068 -20.95972 -20.29271 -19.49116 -18.55782 -17.44772 -16.69804 -16.41189 -15.79831 -15.29231 -14.83631 -14.64428 -14.43524 -14.03623 -13.95675 -13.61353 -13.48965 -13.42085 -13.06629 -12.83586 -12.60589 -12.44806 -12.36402 -12.04201 -11.93915 -11.68942 -11.57995 -11.28845 -11.16731 -11.13269 -11.04180 -10.88850 -10.84983 -10.63484 -10.50703 -10.46812 -10.39195 -10.27181 -10.06995 -9.54918 -9.35830 -8.79975 -8.43250 -7.14113 -5.70107 -3.05154 2.82745 3.05464 3.38902 3.45208 3.48948 4.25551 4.40186 4.50997 4.52739 4.64625 4.66177 4.78083 4.84920 4.89177 4.94774 5.17544 5.23929 5.29072 5.32332 5.38039 5.39992 5.47495 5.51666 5.53643 5.58930 5.59827 5.65684 5.68261 5.70935 5.73284 5.77140 5.82824 5.85213 5.90816 5.93737 5.98696 6.01603 6.05191 6.10635 6.21066 6.31005 6.37853 6.45031 6.48124 6.78371 7.00221 7.70708 8.07879 8.39184 8.48835 9.28516 10.00249 10.20830 11.48601 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.003866 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.934278 B = 7240.550057 C = 8343.295276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.162 4.162 4 C 0.534 3.466 5 O -0.522 6.522 6 N -0.610 5.610 7 C 0.092 3.908 8 C -0.136 4.136 9 C -0.126 4.126 10 C 0.127 3.873 11 H 0.073 0.927 12 C 0.149 3.851 13 N -0.753 5.753 14 C -0.237 4.237 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.887 3.113 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.279 1.279 22 C -0.067 4.067 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.049 0.951 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.063 0.937 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.117 13.594 -16.985 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.219 4.219 4 C 0.322 3.678 5 O -0.396 6.396 6 N -0.345 5.345 7 C -0.030 4.030 8 C -0.174 4.174 9 C -0.164 4.164 10 C 0.024 3.976 11 H 0.091 0.909 12 C 0.021 3.979 13 N -0.399 5.399 14 C -0.367 4.367 15 H 0.106 0.894 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.718 3.282 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.086 4.086 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.514 12.937 -17.176 27.113 hybrid contribution -0.842 -0.510 0.947 1.366 sum -17.355 12.427 -16.229 26.815 Atomic orbital electron populations 1.21978 0.92858 1.02787 1.02530 1.20655 0.96776 0.96512 0.93179 1.22351 1.02392 0.94045 1.03077 1.20208 0.79332 0.85223 0.83006 1.90744 1.39670 1.23607 1.85629 1.48453 1.61282 1.19456 1.05343 1.22662 0.97215 0.86011 0.97161 1.22827 0.98794 1.00897 0.94884 1.22716 0.98714 0.97820 0.97109 1.21842 0.97784 0.96114 0.81890 0.90860 1.20964 0.90570 0.95298 0.91036 1.42619 1.07773 1.67006 1.22509 1.19045 0.84229 1.24107 1.09345 0.89360 1.24679 0.95931 0.99962 0.98679 1.69707 1.16985 1.41415 1.30274 0.86511 0.82303 0.79122 0.80289 1.21122 1.21797 1.20572 1.21934 0.95376 0.99849 0.91410 1.22614 0.95817 1.02298 0.95643 1.22146 0.96939 1.01465 0.95634 1.22111 0.95347 1.00969 0.97691 1.22487 0.98208 1.00645 0.94343 0.91739 0.91356 0.92082 0.91365 0.91428 0.91059 0.91127 0.89890 0.89983 0.90850 0.90254 0.89779 0.96126 0.93291 0.80710 0.93135 0.89760 0.91234 0.90643 0.92015 0.92160 0.92117 0.92173 0.91864 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.80 37.16 0.29 -0.94 16 2 C -0.07 -0.73 0.33 -155.66 -0.05 -0.78 16 3 C -0.16 -1.42 7.40 37.16 0.28 -1.15 16 4 C 0.53 8.06 6.20 -10.99 -0.07 7.99 16 5 O -0.52 -10.26 13.81 5.55 0.08 -10.18 16 6 N -0.61 -8.54 3.05 -163.01 -0.50 -9.04 16 7 C 0.09 0.90 4.76 -2.53 -0.01 0.89 16 8 C -0.14 -1.29 7.09 -24.58 -0.17 -1.46 16 9 C -0.13 -1.69 6.15 -24.89 -0.15 -1.85 16 10 C 0.13 2.12 2.97 -66.95 -0.20 1.93 16 11 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.15 3.22 5.67 -4.04 -0.02 3.19 16 13 N -0.75 -18.97 5.25 -59.91 -0.31 -19.28 16 14 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 15 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 16 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 17 N -0.94 -30.36 13.97 55.49 0.78 -29.58 16 18 Si 0.89 22.83 27.89 -169.99 -4.74 18.09 16 19 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.28 -6.61 6.31 56.52 0.36 -6.26 16 22 C -0.07 -0.74 1.84 -88.62 -0.16 -0.90 16 23 C -0.13 -1.50 5.63 -24.96 -0.14 -1.64 16 24 C -0.12 -1.24 6.81 -25.51 -0.17 -1.41 16 25 C -0.12 -1.05 6.80 -25.62 -0.17 -1.22 16 26 C -0.12 -1.00 4.95 -25.07 -0.12 -1.12 16 27 H 0.06 0.51 5.31 -51.93 -0.28 0.23 16 28 H 0.07 0.45 7.43 -51.93 -0.39 0.07 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.69 5.95 -51.93 -0.31 0.38 16 31 H 0.07 0.48 6.38 -51.93 -0.33 0.14 16 32 H 0.07 0.55 4.13 -51.93 -0.21 0.34 16 33 H 0.07 0.65 7.35 -51.93 -0.38 0.27 16 34 H 0.08 0.63 4.33 -51.93 -0.22 0.41 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 39 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 40 H 0.05 1.20 6.51 -51.93 -0.34 0.86 16 41 H 0.36 8.69 5.30 -40.82 -0.22 8.47 16 42 H 0.26 7.95 8.31 -40.82 -0.34 7.62 16 43 H 0.08 1.11 7.78 -51.93 -0.40 0.71 16 44 H 0.07 0.78 5.40 -51.93 -0.28 0.50 16 45 H 0.07 1.12 7.57 -51.93 -0.39 0.73 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 51 H 0.07 0.51 6.19 -51.93 -0.32 0.19 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -34.70 368.00 -9.02 -43.72 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.72 Total: 6.46 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.14 Total: -5.73 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.04 Total: -57.91 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.74 Total: 18.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.70 -9.02 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.849 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds