Wall clock time and date at job start Tue Mar 31 2020 09:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 C 1.53005 * 109.47009 * 240.00199 * 2 1 3 5 5 C 1.50706 * 109.47015 * 59.99779 * 4 2 1 6 6 H 1.07999 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99600 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46674 * 60.00709 * 9 7 5 11 11 H 1.48497 * 109.46832 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46946 * 300.00415 * 9 7 5 13 13 C 1.52991 * 109.47295 * 120.00312 * 2 1 3 14 14 N 1.46500 * 109.47173 * 299.99971 * 13 2 1 15 15 C 1.34776 * 120.00163 * 179.97438 * 14 13 2 16 16 O 1.21584 * 120.00282 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00097 * 179.97438 * 15 14 13 18 18 C 1.47430 * 125.64741 * 4.96835 * 17 15 14 19 19 C 1.54903 * 104.82987 * 204.08822 * 18 17 15 20 20 C 1.55398 * 101.67020 * 323.07438 * 19 18 17 21 21 C 1.47019 * 125.65103 * 184.92044 * 17 15 14 22 22 H 1.09001 * 109.87857 * 59.41043 * 21 17 15 23 23 C 1.52998 * 109.88575 * 298.40183 * 21 17 15 24 24 C 1.53783 * 113.61661 * 186.84759 * 23 21 17 25 25 C 1.53781 * 87.08375 * 139.97981 * 24 23 21 26 26 C 1.53785 * 87.16894 * 334.52430 * 25 24 23 27 27 H 1.08992 * 109.47096 * 299.99489 * 1 2 3 28 28 H 1.09000 * 109.47268 * 60.00358 * 1 2 3 29 29 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47171 * 300.00113 * 3 2 1 32 32 H 1.08992 * 109.46868 * 60.00372 * 3 2 1 33 33 H 1.09000 * 109.46726 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47129 * 300.00044 * 4 2 1 35 35 H 0.97002 * 119.99826 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47328 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.47800 * 59.99924 * 13 2 1 38 38 H 0.97003 * 120.00110 * 0.02562 * 14 13 2 39 39 H 1.08993 * 110.36379 * 322.93184 * 18 17 15 40 40 H 1.09001 * 110.36534 * 85.14095 * 18 17 15 41 41 H 1.09001 * 111.00682 * 81.06597 * 19 18 17 42 42 H 1.09007 * 111.00511 * 204.87689 * 19 18 17 43 43 H 1.09002 * 110.69795 * 277.04774 * 20 19 18 44 44 H 1.08998 * 110.85309 * 153.69881 * 20 19 18 45 45 H 1.09000 * 112.91050 * 55.59270 * 23 21 17 46 46 H 1.08996 * 113.61227 * 25.42352 * 24 23 21 47 47 H 1.08998 * 113.60880 * 254.52642 * 24 23 21 48 48 H 1.08999 * 113.61755 * 89.11388 * 25 24 23 49 49 H 1.08997 * 113.61223 * 219.94039 * 25 24 23 50 50 H 1.09002 * 113.61421 * 140.02553 * 26 25 24 51 51 H 1.09002 * 113.61638 * 270.92318 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9163 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2477 0.3987 -5.2572 10 1 1.7418 1.7991 -5.2571 11 1 1.7428 -0.3012 -6.4697 12 1 -0.2372 0.3976 -5.2572 13 6 2.0400 -0.7213 1.2491 14 7 1.5517 -0.0307 2.4453 15 6 1.8769 -0.4915 3.6694 16 8 2.5759 -1.4801 3.7810 17 7 1.4281 0.1441 4.7699 18 6 0.4952 1.2856 4.7824 19 6 0.7770 2.0132 6.1206 20 6 1.0603 0.8193 7.0740 21 6 1.7869 -0.1867 6.1567 22 1 2.8651 -0.0995 6.2915 23 6 1.3352 -1.6111 6.4856 24 6 1.5176 -1.9891 7.9650 25 6 0.1600 -2.7048 7.8681 26 6 -0.1817 -1.7384 6.7218 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 2.8615 -1.8821 -4.7338 36 1 3.1300 -0.7209 1.2493 37 1 1.6767 -1.7490 1.2492 38 1 0.9937 0.7577 2.3564 39 1 0.6955 1.9483 3.9406 40 1 -0.5358 0.9333 4.7501 41 1 1.6505 2.6599 6.0373 42 1 -0.0951 2.5787 6.4491 43 1 0.1283 0.3960 7.4488 44 1 1.7050 1.1252 7.8980 45 1 1.7331 -2.3529 5.7931 46 1 1.5124 -1.1321 8.6385 47 1 2.3550 -2.6637 8.1432 48 1 0.2365 -3.7457 7.5536 49 1 -0.4664 -2.5742 8.7506 50 1 -0.7153 -2.2107 5.8969 51 1 -0.6508 -0.8130 7.0560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377028607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:50 Heat of formation + Delta-G solvation = -22.169453 kcal Electronic energy + Delta-G solvation = -26714.400778 eV Core-core repulsion = 23227.841564 eV Total energy + Delta-G solvation = -3486.559214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75678 -39.00461 -37.27180 -36.55217 -33.54647 -32.19379 -31.29483 -29.71656 -27.08667 -26.49036 -26.10386 -25.80852 -25.07365 -23.25872 -22.35310 -21.70752 -19.69976 -19.02405 -18.29769 -17.45319 -16.80126 -16.28066 -15.90551 -15.47661 -14.93091 -14.58584 -14.43826 -14.16156 -13.79317 -13.48199 -13.37895 -13.17579 -13.00773 -12.85256 -12.70692 -12.49257 -12.08061 -12.04085 -11.83304 -11.49742 -11.35663 -11.14334 -11.05927 -10.98542 -10.85876 -10.67612 -10.61000 -10.45843 -10.36863 -10.24763 -10.21885 -9.84952 -9.82108 -9.17573 -8.91602 -8.80405 -8.34325 -8.32304 -5.98202 -3.99552 2.74655 3.32800 3.38236 3.39353 3.44810 4.10053 4.29232 4.38262 4.46802 4.53673 4.59049 4.65324 4.66881 4.80667 5.07013 5.11422 5.29282 5.37162 5.39987 5.45186 5.51195 5.53519 5.62025 5.63106 5.67173 5.73288 5.76408 5.77850 5.78577 5.85546 6.04342 6.07372 6.20308 6.23159 6.28996 6.35977 6.44601 6.51453 6.64212 6.64916 6.85839 7.08938 7.09682 7.15910 7.22760 7.66270 7.79176 8.00464 8.21093 8.42445 8.86305 9.05053 9.63339 11.13259 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027532 B = 0.002774 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.752618 B =10092.612316 C =10532.799746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.719 3.281 16 O -0.590 6.590 17 N -0.635 5.635 18 C 0.100 3.900 19 C -0.131 4.131 20 C -0.138 4.138 21 C 0.168 3.832 22 H 0.071 0.929 23 C -0.119 4.119 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.140 4.140 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.393 0.607 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 6.169 24.462 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.024 3.976 14 N -0.391 5.391 15 C 0.421 3.579 16 O -0.468 6.468 17 N -0.374 5.374 18 C -0.024 4.024 19 C -0.169 4.169 20 C -0.175 4.175 21 C 0.064 3.936 22 H 0.089 0.911 23 C -0.138 4.138 24 C -0.173 4.173 25 C -0.178 4.178 26 C -0.177 4.177 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.478 5.261 24.283 25.443 hybrid contribution -0.558 0.785 -1.084 1.450 sum -6.036 6.047 23.199 24.722 Atomic orbital electron populations 1.21742 0.95342 1.01118 1.00045 1.20910 0.95429 0.95847 0.95077 1.21741 1.00535 0.95933 1.00035 1.19081 0.96370 0.95220 0.89396 1.21147 1.31197 1.12088 0.90540 0.92337 1.25010 0.95327 0.95084 0.99050 1.69954 1.36902 1.23004 1.23528 0.86714 0.79132 0.79763 0.82707 1.20342 1.21402 1.20345 1.21478 0.98618 0.95618 0.81906 1.45406 1.56267 1.33055 1.04413 1.15510 0.80248 0.82408 0.79755 1.90892 1.43362 1.27048 1.85504 1.47583 1.49759 1.35052 1.04961 1.22228 0.93660 0.87966 0.98506 1.22780 1.02482 0.97238 0.94433 1.22989 1.01754 0.95188 0.97600 1.21219 0.98838 0.93699 0.79845 0.91089 1.23010 0.96327 0.97545 0.96958 1.22932 0.97725 1.00324 0.96344 1.22774 0.97321 0.99013 0.98721 1.23119 0.96565 0.99530 0.98497 0.95418 0.91506 0.93387 0.93377 0.91494 0.95448 0.96320 0.96325 0.92986 0.92082 0.92089 0.77213 0.91117 0.91653 0.90610 0.89962 0.89399 0.90190 0.87647 0.90116 0.91566 0.90372 0.91754 0.91887 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.92 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.15 2.73 4.56 -4.05 -0.02 2.71 16 14 N -0.74 -11.51 4.92 -65.23 -0.32 -11.83 16 15 C 0.72 11.80 8.31 -86.92 -0.72 11.08 16 16 O -0.59 -11.96 15.27 5.29 0.08 -11.88 16 17 N -0.63 -7.83 3.07 -168.70 -0.52 -8.34 16 18 C 0.10 0.89 6.68 -2.53 -0.02 0.87 16 19 C -0.13 -0.86 7.09 -24.45 -0.17 -1.03 16 20 C -0.14 -0.96 5.13 -24.77 -0.13 -1.08 16 21 C 0.17 1.78 3.01 -66.96 -0.20 1.58 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.12 -1.30 3.58 -89.67 -0.32 -1.62 16 24 C -0.14 -1.15 7.44 -25.92 -0.19 -1.34 16 25 C -0.14 -1.17 8.07 -25.92 -0.21 -1.38 16 26 C -0.14 -1.31 7.36 -25.78 -0.19 -1.50 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.39 5.29 4.56 -40.82 -0.19 5.11 16 39 H 0.07 0.60 7.12 -51.93 -0.37 0.23 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.56 4.95 -51.93 -0.26 0.30 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.11 1.55 6.83 -51.93 -0.35 1.19 16 46 H 0.08 0.56 7.14 -51.93 -0.37 0.19 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.09 0.67 5.38 -51.93 -0.28 0.40 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -31.40 381.48 -10.42 -41.81 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.99 Total: 2.81 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.13 Total: -8.72 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.10 Total: -46.03 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.40 -10.42 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.645 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds