Wall clock time and date at job start Tue Mar 31 2020 09:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47270 * 120.00404 * 2 1 3 5 5 C 1.50704 * 109.46961 * 64.99724 * 4 2 1 6 6 O 1.21282 * 119.99960 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99514 * 180.02562 * 5 4 2 8 8 C 1.46923 * 120.63160 * 1.82897 * 7 5 4 9 9 C 1.53187 * 108.77508 * 126.39507 * 8 7 5 10 10 C 1.53030 * 109.31940 * 54.62909 * 9 8 7 11 11 C 1.53042 * 109.53789 * 298.63856 * 10 9 8 12 12 C 1.46928 * 120.62512 * 181.82220 * 7 5 4 13 13 H 1.09003 * 109.70052 * 113.75166 * 12 7 5 14 14 C 1.53001 * 109.59033 * 353.40073 * 12 7 5 15 15 H 1.08999 * 109.87183 * 316.26969 * 14 12 7 16 16 C 1.54319 * 109.88461 * 77.44064 * 14 12 7 17 17 C 1.55156 * 102.94118 * 141.60939 * 16 14 12 18 18 C 1.54909 * 101.58381 * 324.50269 * 17 16 14 19 19 N 1.47017 * 109.88133 * 195.25349 * 14 12 7 20 20 C 1.36939 * 125.65051 * 61.68008 * 19 14 12 21 21 H 1.08003 * 119.99652 * 331.96392 * 20 19 14 22 22 C 1.38814 * 120.00289 * 151.96751 * 20 19 14 23 23 N 1.31618 * 119.99803 * 176.59750 * 22 20 19 24 24 Si 1.86800 * 119.99834 * 356.60272 * 22 20 19 25 25 H 1.48493 * 109.47303 * 84.00188 * 24 22 20 26 26 H 1.48501 * 109.46965 * 204.00279 * 24 22 20 27 27 H 1.48504 * 109.46798 * 323.99915 * 24 22 20 28 28 H 1.08995 * 109.46907 * 300.00339 * 1 2 3 29 29 H 1.09004 * 109.46832 * 59.99519 * 1 2 3 30 30 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46741 * 240.00368 * 2 1 3 32 32 H 1.08998 * 109.47636 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47381 * 300.00503 * 3 2 1 34 34 H 1.09001 * 109.47076 * 59.99780 * 3 2 1 35 35 H 1.09002 * 109.46666 * 304.99867 * 4 2 1 36 36 H 1.08994 * 109.47178 * 184.99716 * 4 2 1 37 37 H 1.08998 * 109.58992 * 6.60046 * 8 7 5 38 38 H 1.09002 * 109.69959 * 246.24382 * 8 7 5 39 39 H 1.09002 * 109.49534 * 294.67546 * 9 8 7 40 40 H 1.09000 * 109.50003 * 174.58743 * 9 8 7 41 41 H 1.09003 * 109.46405 * 178.61842 * 10 9 8 42 42 H 1.08995 * 109.44952 * 58.65011 * 10 9 8 43 43 H 1.09000 * 109.49688 * 301.40641 * 11 10 9 44 44 H 1.09001 * 109.52364 * 181.33455 * 11 10 9 45 45 H 1.08997 * 110.72451 * 259.97502 * 16 14 12 46 46 H 1.09010 * 110.71703 * 23.25143 * 16 14 12 47 47 H 1.09002 * 111.00796 * 206.42557 * 17 16 14 48 48 H 1.09002 * 111.00156 * 82.57464 * 17 16 14 49 49 H 1.09000 * 110.36308 * 278.17001 * 18 17 16 50 50 H 1.08996 * 110.36509 * 155.84813 * 18 17 16 51 51 H 0.96996 * 119.99590 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1887 6 8 1.0117 -2.5903 0.2397 7 7 1.9845 -3.0086 2.1893 8 6 2.7124 -2.5100 3.3642 9 6 1.9447 -2.9126 4.6272 10 6 1.7206 -4.4264 4.6224 11 6 0.8820 -4.8158 3.4028 12 6 1.6376 -4.4349 2.1259 13 1 2.5469 -5.0311 2.0477 14 6 0.7488 -4.6931 0.9076 15 1 -0.0099 -3.9143 0.8308 16 6 1.6090 -4.7204 -0.3734 17 6 0.9574 -5.8563 -1.2054 18 6 0.5418 -6.8550 -0.0965 19 7 0.1043 -6.0089 1.0287 20 6 -0.7601 -6.3858 2.0217 21 1 -0.6903 -5.9320 2.9993 22 6 -1.7257 -7.3512 1.7719 23 7 -2.5125 -7.7619 2.7438 24 14 -1.9084 -8.0675 0.0564 25 1 -0.9317 -9.1710 -0.1259 26 1 -3.2867 -8.5926 -0.1166 27 1 -1.6523 -7.0080 -0.9522 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2950 37 1 2.7883 -1.4239 3.3132 38 1 3.7114 -2.9454 3.3895 39 1 0.9817 -2.4023 4.6458 40 1 2.5220 -2.6331 5.5085 41 1 1.1960 -4.7188 5.5321 42 1 2.6832 -4.9357 4.5788 43 1 -0.0710 -4.2877 3.4329 44 1 0.7025 -5.8909 3.4124 45 1 1.5442 -3.7693 -0.9019 46 1 2.6455 -4.9615 -0.1368 47 1 1.6804 -6.3065 -1.8856 48 1 0.0860 -5.4916 -1.7493 49 1 1.3924 -7.4691 0.1991 50 1 -0.2797 -7.4834 -0.4404 51 1 -3.1875 -8.4362 2.5691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025190813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:36 Heat of formation + Delta-G solvation = 37.002874 kcal Electronic energy + Delta-G solvation = -28576.818702 eV Core-core repulsion = 25092.825392 eV Total energy + Delta-G solvation = -3483.993310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60334 -37.85097 -36.93821 -35.46505 -32.79400 -32.30176 -31.58474 -29.80123 -28.19417 -27.28828 -27.07648 -24.51203 -24.37770 -22.59115 -21.38066 -20.61289 -19.74791 -19.36817 -18.80290 -17.19794 -16.21611 -15.92592 -15.83926 -15.31051 -14.67594 -14.45175 -14.13715 -14.03650 -13.85082 -13.61672 -13.02474 -12.84639 -12.66821 -12.53848 -12.33316 -12.27266 -12.18230 -12.03879 -11.92950 -11.31804 -11.24684 -11.04044 -10.93602 -10.91812 -10.86890 -10.67110 -10.64499 -10.51868 -10.42479 -10.20315 -9.87320 -9.47243 -9.13218 -8.96885 -8.56442 -8.33053 -8.05472 -6.73264 -5.81483 -3.22048 2.93804 3.29212 3.41257 3.53574 3.58019 4.62609 4.64393 4.75095 4.87988 4.92822 5.07001 5.16032 5.26543 5.31695 5.38701 5.44277 5.49140 5.53962 5.55320 5.62837 5.66317 5.70832 5.71161 5.74510 5.87519 5.88287 5.95209 5.95483 6.07215 6.08009 6.13310 6.26316 6.27167 6.35658 6.35907 6.41530 6.52304 6.54481 6.59744 6.70501 6.79291 6.84455 7.02784 7.09409 7.25234 7.48848 7.78866 7.99971 8.44463 8.64520 8.98582 9.81264 10.38523 11.33215 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.005481 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.233139 B = 5106.977485 C = 6089.056747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.136 4.136 5 C 0.498 3.502 6 O -0.510 6.510 7 N -0.605 5.605 8 C 0.110 3.890 9 C -0.134 4.134 10 C -0.123 4.123 11 C -0.136 4.136 12 C 0.140 3.860 13 H 0.056 0.944 14 C 0.170 3.830 15 H 0.081 0.919 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.109 3.891 19 N -0.610 5.610 20 C -0.258 4.258 21 H 0.120 0.880 22 C 0.019 3.981 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.293 1.293 26 H -0.313 1.313 27 H -0.273 1.273 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.024 0.976 50 H 0.037 0.963 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 15.559 -0.613 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 C -0.204 4.204 4 C -0.176 4.176 5 C 0.287 3.713 6 O -0.387 6.387 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.161 4.161 11 C -0.173 4.173 12 C 0.036 3.964 13 H 0.074 0.926 14 C 0.064 3.936 15 H 0.098 0.902 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.015 4.015 19 N -0.337 5.337 20 C -0.385 4.385 21 H 0.137 0.863 22 C -0.179 4.179 23 N -0.566 5.566 24 Si 0.748 3.252 25 H -0.222 1.222 26 H -0.243 1.243 27 H -0.201 1.201 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.137 0.863 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.054 0.946 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.336 15.201 -0.995 19.602 hybrid contribution 0.054 -0.613 -0.651 0.896 sum 12.390 14.588 -1.646 19.210 Atomic orbital electron populations 1.21961 0.94611 1.03885 1.00584 1.20847 0.96731 0.94885 0.97346 1.21863 1.00577 0.96248 1.01741 1.21819 1.02043 0.93379 1.00396 1.20585 0.80728 0.87694 0.82316 1.90662 1.38924 1.75819 1.33335 1.48255 1.56773 1.09651 1.19255 1.21656 0.95116 0.99051 0.85568 1.21916 1.00690 0.97972 0.96653 1.21632 1.00334 0.94383 0.99761 1.22639 0.97666 1.05418 0.91605 1.22099 0.97732 0.78088 0.98483 0.92554 1.21503 0.93946 0.88381 0.89807 0.90212 1.23007 0.96719 0.98788 0.96908 1.22755 0.99820 0.97463 0.97381 1.22117 0.96473 0.93707 0.89193 1.44961 1.51980 1.08732 1.27994 1.19484 1.06163 1.21036 0.91812 0.86322 1.25207 0.95784 0.99986 0.96883 1.69702 1.22703 1.32838 1.31394 0.86524 0.74063 0.78360 0.86283 1.22183 1.24250 1.20069 0.93648 0.93308 0.90144 0.90513 0.92957 0.92611 0.92846 0.89533 0.89753 0.90381 0.91913 0.91661 0.91585 0.92039 0.92647 0.91576 0.86337 0.88271 0.93767 0.92508 0.91812 0.95870 0.94592 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.93 37.16 0.33 -1.52 16 2 C -0.08 -0.84 2.57 -90.62 -0.23 -1.07 16 3 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 4 C -0.14 -1.42 3.53 -27.88 -0.10 -1.52 16 5 C 0.50 7.19 7.11 -10.98 -0.08 7.11 16 6 O -0.51 -8.88 6.66 5.56 0.04 -8.84 16 7 N -0.61 -8.77 2.97 -165.22 -0.49 -9.26 16 8 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16 9 C -0.13 -1.55 6.08 -26.62 -0.16 -1.71 16 10 C -0.12 -1.78 5.88 -26.69 -0.16 -1.94 16 11 C -0.14 -2.54 3.47 -26.61 -0.09 -2.63 16 12 C 0.14 2.52 2.70 -67.60 -0.18 2.33 16 13 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 14 C 0.17 3.57 2.33 -66.96 -0.16 3.41 16 15 H 0.08 1.89 5.88 -51.66 -0.30 1.58 16 16 C -0.12 -2.21 5.44 -24.90 -0.14 -2.34 16 17 C -0.14 -2.71 7.08 -24.58 -0.17 -2.88 16 18 C 0.11 2.55 5.70 -2.53 -0.01 2.54 16 19 N -0.61 -15.01 2.87 -162.58 -0.47 -15.48 16 20 C -0.26 -7.16 8.84 -15.06 -0.13 -7.29 16 21 H 0.12 3.32 4.18 -52.48 -0.22 3.10 16 22 C 0.02 0.57 5.50 -17.43 -0.10 0.48 16 23 N -0.92 -28.59 13.97 55.49 0.78 -27.81 16 24 Si 0.91 24.19 24.51 -169.99 -4.17 20.02 16 25 H -0.29 -7.64 7.09 56.52 0.40 -7.24 16 26 H -0.31 -8.44 7.11 56.52 0.40 -8.04 16 27 H -0.27 -7.13 6.32 56.52 0.36 -6.78 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 31 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.81 7.61 -51.93 -0.40 0.41 16 36 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 37 H 0.08 0.66 5.94 -51.93 -0.31 0.35 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.39 7.49 -51.93 -0.39 1.00 16 44 H 0.12 2.64 5.26 -51.93 -0.27 2.37 16 45 H 0.10 1.86 5.48 -52.74 -0.29 1.57 16 46 H 0.04 0.79 7.60 -51.92 -0.39 0.39 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.04 0.92 1.57 -51.93 -0.08 0.84 16 51 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -31.17 357.06 -8.86 -40.03 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.87 Total: 2.68 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.06 Total: -6.73 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.18 Total: -52.55 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.04 Total: -8.84 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.17 Total: 20.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.17 -8.86 -40.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025190813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.034 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds