Wall clock time and date at job start Tue Mar 31 2020 09:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08999 * 110.53787 * 307.60710 * 3 2 1 5 5 C 1.54887 * 110.48766 * 70.22628 * 3 2 1 6 6 C 1.54886 * 102.75092 * 156.61918 * 5 3 2 7 7 C 1.54264 * 104.19521 * 322.05722 * 6 5 3 8 8 C 1.53880 * 106.59893 * 23.60828 * 7 6 5 9 9 H 1.09000 * 110.03453 * 240.66648 * 8 7 6 10 10 C 1.50700 * 110.03064 * 119.28701 * 8 7 6 11 11 O 1.21284 * 120.00010 * 241.45564 * 10 8 7 12 12 N 1.34780 * 120.00481 * 61.45146 * 10 8 7 13 13 C 1.46502 * 119.99593 * 0.02562 * 12 10 8 14 14 C 1.46497 * 120.00097 * 179.97438 * 12 10 8 15 15 C 1.53033 * 109.46005 * 240.00228 * 14 12 10 16 16 C 1.53196 * 109.31256 * 178.63244 * 15 14 12 17 17 N 1.46922 * 108.77612 * 54.63579 * 16 15 14 18 18 C 1.36936 * 120.63625 * 126.37351 * 17 16 15 19 19 H 1.08003 * 119.99356 * 332.09108 * 18 17 16 20 20 C 1.38803 * 120.00756 * 152.09452 * 18 17 16 21 21 N 1.31618 * 119.99736 * 335.49342 * 20 18 17 22 22 Si 1.86799 * 120.00355 * 155.49660 * 20 18 17 23 23 H 1.48498 * 109.47329 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47105 * 59.99889 * 22 20 18 25 25 H 1.48503 * 109.46825 * 299.99639 * 22 20 18 26 26 C 1.46932 * 118.73835 * 306.64270 * 17 16 15 27 27 C 1.52761 * 109.00441 * 53.31141 * 26 17 16 28 28 H 1.08999 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47207 * 299.99902 * 1 2 3 30 30 H 1.08999 * 109.47103 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.46795 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.46890 * 120.00233 * 2 1 3 33 33 H 1.08997 * 110.75482 * 38.29820 * 5 3 2 34 34 H 1.09003 * 110.91027 * 275.00967 * 5 3 2 35 35 H 1.08999 * 110.48673 * 203.37815 * 6 5 3 36 36 H 1.09003 * 110.59940 * 80.78719 * 6 5 3 37 37 H 1.09003 * 110.03417 * 264.32605 * 7 6 5 38 38 H 1.09004 * 110.03477 * 142.89252 * 7 6 5 39 39 H 1.08995 * 109.47098 * 269.99918 * 13 12 10 40 40 H 1.09003 * 109.47115 * 29.99991 * 13 12 10 41 41 H 1.08997 * 109.46629 * 149.99536 * 13 12 10 42 42 H 1.09003 * 109.46085 * 359.97438 * 14 12 10 43 43 H 1.09000 * 109.50059 * 58.68105 * 15 14 12 44 44 H 1.09001 * 109.52872 * 298.59740 * 15 14 12 45 45 H 1.08999 * 109.58408 * 294.84872 * 16 15 14 46 46 H 1.09001 * 109.70539 * 174.49457 * 16 15 14 47 47 H 0.97002 * 120.00481 * 354.24867 * 21 20 18 48 48 H 1.09003 * 109.58609 * 173.14354 * 26 17 16 49 49 H 1.08993 * 109.58780 * 293.57237 * 26 17 16 50 50 H 1.09006 * 109.56299 * 185.55064 * 27 26 17 51 51 H 1.09002 * 109.38821 * 65.51517 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7579 2.1172 1.3654 6 6 2.8153 3.2480 1.4128 7 6 4.0702 2.6196 0.7724 8 6 3.5772 1.4716 -0.1259 9 1 3.9984 0.5251 0.2130 10 6 3.9732 1.7294 -1.5569 11 8 3.1195 1.8527 -2.4096 12 7 5.2760 1.8231 -1.8893 13 6 6.3072 1.6737 -0.8595 14 6 5.6608 2.0731 -3.2806 15 6 6.5251 0.9159 -3.7863 16 6 6.8972 1.1642 -5.2515 17 7 7.5325 2.4844 -5.3610 18 6 8.7598 2.6213 -5.9526 19 1 9.4609 1.7998 -5.9381 20 6 9.1030 3.8156 -6.5710 21 7 8.1617 4.6179 -7.0210 22 14 10.9009 4.2844 -6.7645 23 1 10.9990 5.5971 -7.4517 24 1 11.5981 3.2500 -7.5701 25 1 11.5346 4.3790 -5.4248 26 6 6.8286 3.6543 -4.8181 27 6 6.4549 3.3789 -3.3627 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9089 1.4125 2.1830 34 1 0.7494 2.5298 1.3944 35 1 3.0177 3.5380 2.4438 36 1 2.4820 4.1092 0.8336 37 1 4.7299 2.2301 1.5477 38 1 4.5958 3.3632 0.1732 39 1 6.5348 2.6489 -0.4291 40 1 5.9453 1.0067 -0.0770 41 1 7.2086 1.2543 -1.3062 42 1 4.7650 2.1535 -3.8964 43 1 5.9673 -0.0171 -3.7057 44 1 7.4329 0.8500 -3.1867 45 1 5.9973 1.1396 -5.8662 46 1 7.5918 0.3952 -5.5897 47 1 7.2332 4.3380 -6.9965 48 1 7.4790 4.5276 -4.8679 49 1 5.9232 3.8369 -5.3966 50 1 5.8471 4.1990 -2.9805 51 1 7.3631 3.2905 -2.7664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005950737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:15 Heat of formation + Delta-G solvation = -41.197745 kcal Electronic energy + Delta-G solvation = -27158.881296 eV Core-core repulsion = 23671.496953 eV Total energy + Delta-G solvation = -3487.384343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -40.57369 -38.38916 -37.08241 -35.29747 -33.44197 -32.57811 -30.52832 -29.86536 -28.82638 -27.78769 -26.86191 -24.94319 -23.24607 -22.34405 -22.13001 -21.02208 -20.22547 -19.08243 -18.79983 -17.43324 -16.78138 -16.32544 -15.72086 -14.98438 -14.75277 -14.63168 -14.27495 -14.04457 -13.54101 -13.46261 -13.41735 -13.33489 -13.24529 -12.90958 -12.79443 -12.39524 -12.28066 -12.11659 -11.79530 -11.66294 -11.46365 -11.17228 -11.12990 -10.92601 -10.83680 -10.71979 -10.69982 -10.67386 -10.54995 -10.39006 -10.09603 -10.08522 -9.91153 -9.51145 -9.26530 -8.45092 -8.32116 -6.89631 -6.06667 -3.23662 2.75958 3.13582 3.49285 3.51983 3.70531 4.23925 4.36476 4.44969 4.59336 4.81538 4.90731 5.04357 5.09764 5.13778 5.20162 5.24015 5.32552 5.34582 5.38417 5.40858 5.42074 5.46791 5.52447 5.58475 5.66460 5.66995 5.70172 5.76900 5.79297 5.88826 5.93862 5.94254 5.99574 6.05234 6.13849 6.16008 6.21969 6.34538 6.35806 6.46218 6.49959 6.67452 6.79847 6.85069 7.05529 7.16177 7.58703 7.99863 8.33480 8.57635 9.11540 9.84587 10.29306 11.22022 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.003068 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.069528 B = 9122.960049 C = 9437.211247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.094 0.906 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.109 4.109 9 H 0.095 0.905 10 C 0.516 3.484 11 O -0.542 6.542 12 N -0.608 5.608 13 C 0.077 3.923 14 C 0.145 3.855 15 C -0.138 4.138 16 C 0.150 3.850 17 N -0.599 5.599 18 C -0.350 4.350 19 H 0.056 0.944 20 C -0.024 4.024 21 N -0.916 5.916 22 Si 1.065 2.935 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.154 3.846 27 C -0.139 4.139 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.058 0.942 47 H 0.270 0.730 48 H 0.082 0.918 49 H 0.018 0.982 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 -7.059 19.688 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.112 0.888 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.130 4.130 9 H 0.113 0.887 10 C 0.304 3.696 11 O -0.420 6.420 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.043 3.957 15 C -0.178 4.178 16 C 0.023 3.977 17 N -0.323 5.323 18 C -0.479 4.479 19 H 0.074 0.926 20 C -0.226 4.226 21 N -0.556 5.556 22 Si 0.895 3.105 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.027 3.973 27 C -0.179 4.179 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.036 0.964 50 H 0.070 0.930 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.557 -5.793 18.678 21.766 hybrid contribution -0.813 -1.357 0.605 1.693 sum -10.370 -7.150 19.283 23.032 Atomic orbital electron populations 1.21748 0.95765 1.01333 1.01881 1.21529 0.96097 0.95907 1.01637 1.21989 0.92615 0.96833 0.98338 0.88783 1.22571 0.98841 0.97288 0.96872 1.22351 0.95100 0.98261 1.00514 1.22196 0.98151 0.96845 0.98153 1.22014 0.97884 1.00487 0.92611 0.88657 1.20601 0.82158 0.76231 0.90633 1.90662 1.49450 1.50531 1.51326 1.48092 1.05567 1.70862 1.09494 1.21812 0.92322 1.01335 0.91179 1.21126 0.98573 0.95489 0.80477 1.22354 0.98928 0.96589 0.99916 1.20851 0.95876 0.89219 0.91734 1.44138 1.19883 1.01429 1.66856 1.19961 0.90934 1.03241 1.33784 0.92643 1.25859 1.06014 0.95708 0.95062 1.70774 1.02291 1.40692 1.41811 0.83528 0.74832 0.76154 0.76033 1.21082 1.21984 1.22097 1.20835 0.95569 0.92106 0.88793 1.22340 0.98937 0.95502 1.01103 0.93027 0.92793 0.92560 0.91964 0.92279 0.91486 0.91448 0.91507 0.91500 0.90993 0.91138 0.92594 0.91492 0.90715 0.88815 0.92894 0.91991 0.96422 0.92341 0.91948 0.89971 0.96401 0.92964 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.79 37.16 0.36 -0.92 16 2 C -0.11 -1.09 5.28 -26.73 -0.14 -1.23 16 3 C -0.08 -0.83 2.17 -88.96 -0.19 -1.02 16 4 H 0.09 1.25 6.90 -51.93 -0.36 0.89 16 5 C -0.12 -0.97 5.67 -24.74 -0.14 -1.11 16 6 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 7 C -0.12 -1.05 4.92 -25.61 -0.13 -1.18 16 8 C -0.11 -1.17 2.00 -90.65 -0.18 -1.35 16 9 H 0.10 0.89 7.11 -51.93 -0.37 0.52 16 10 C 0.52 7.71 6.85 -10.98 -0.08 7.63 16 11 O -0.54 -10.20 14.74 5.55 0.08 -10.12 16 12 N -0.61 -8.91 2.73 -173.89 -0.47 -9.39 16 13 C 0.08 0.86 8.13 59.85 0.49 1.34 16 14 C 0.15 2.60 2.49 -67.89 -0.17 2.43 16 15 C -0.14 -2.45 5.31 -26.61 -0.14 -2.59 16 16 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 17 N -0.60 -15.06 2.85 -172.58 -0.49 -15.55 16 18 C -0.35 -9.75 9.49 -15.06 -0.14 -9.89 16 19 H 0.06 1.54 7.94 -52.48 -0.42 1.13 16 20 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 21 N -0.92 -27.56 12.42 55.49 0.69 -26.87 16 22 Si 1.06 25.14 29.98 -169.99 -5.10 20.04 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.15 3.64 4.66 -3.93 -0.02 3.62 16 27 C -0.14 -2.67 5.32 -26.83 -0.14 -2.81 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.41 7.56 -51.93 -0.39 0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.48 8.02 -51.93 -0.42 0.06 16 33 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 34 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.07 0.74 6.68 -51.93 -0.35 0.40 16 39 H 0.06 0.58 7.48 -51.93 -0.39 0.19 16 40 H 0.07 0.58 6.19 -51.93 -0.32 0.25 16 41 H 0.07 0.87 6.45 -51.93 -0.34 0.54 16 42 H 0.09 1.92 6.90 -51.93 -0.36 1.56 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 47 H 0.27 8.22 6.69 -40.82 -0.27 7.94 16 48 H 0.08 2.17 6.32 -51.93 -0.33 1.84 16 49 H 0.02 0.44 7.86 -51.93 -0.41 0.04 16 50 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -31.72 377.91 -9.80 -41.52 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.31 Total: 0.56 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.90 Total: -5.88 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.28 Total: -51.81 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.72 -9.80 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005950737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.322 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds