Wall clock time and date at job start Tue Mar 31 2020 09:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08999 * 110.53787 * 307.60710 * 3 2 1 5 5 C 1.54887 * 110.48766 * 70.22628 * 3 2 1 6 6 C 1.54886 * 102.75092 * 156.61918 * 5 3 2 7 7 C 1.54264 * 104.19521 * 322.05722 * 6 5 3 8 8 C 1.53880 * 106.59893 * 23.60828 * 7 6 5 9 9 H 1.09000 * 110.03453 * 240.66648 * 8 7 6 10 10 C 1.50700 * 110.03064 * 119.28701 * 8 7 6 11 11 O 1.21284 * 120.00010 * 241.45564 * 10 8 7 12 12 N 1.34780 * 120.00481 * 61.45146 * 10 8 7 13 13 C 1.46502 * 119.99593 * 0.02562 * 12 10 8 14 14 C 1.46497 * 120.00097 * 179.97438 * 12 10 8 15 15 C 1.53033 * 109.46005 * 240.00228 * 14 12 10 16 16 C 1.53196 * 109.31256 * 178.63244 * 15 14 12 17 17 N 1.46922 * 108.77612 * 54.63579 * 16 15 14 18 18 C 1.36936 * 120.63625 * 126.37351 * 17 16 15 19 19 H 1.08003 * 119.99356 * 332.09108 * 18 17 16 20 20 C 1.38803 * 120.00756 * 152.09452 * 18 17 16 21 21 N 1.31618 * 119.99736 * 335.49342 * 20 18 17 22 22 Si 1.86799 * 120.00355 * 155.49660 * 20 18 17 23 23 H 1.48498 * 109.47329 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47105 * 59.99889 * 22 20 18 25 25 H 1.48503 * 109.46825 * 299.99639 * 22 20 18 26 26 C 1.46932 * 118.73835 * 306.64270 * 17 16 15 27 27 C 1.52761 * 109.00441 * 53.31141 * 26 17 16 28 28 H 1.08999 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47207 * 299.99902 * 1 2 3 30 30 H 1.08999 * 109.47103 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.46795 * 240.00021 * 2 1 3 32 32 H 1.09002 * 109.46890 * 120.00233 * 2 1 3 33 33 H 1.08997 * 110.75482 * 38.29820 * 5 3 2 34 34 H 1.09003 * 110.91027 * 275.00967 * 5 3 2 35 35 H 1.08999 * 110.48673 * 203.37815 * 6 5 3 36 36 H 1.09003 * 110.59940 * 80.78719 * 6 5 3 37 37 H 1.09003 * 110.03417 * 264.32605 * 7 6 5 38 38 H 1.09004 * 110.03477 * 142.89252 * 7 6 5 39 39 H 1.08995 * 109.47098 * 269.99918 * 13 12 10 40 40 H 1.09003 * 109.47115 * 29.99991 * 13 12 10 41 41 H 1.08997 * 109.46629 * 149.99536 * 13 12 10 42 42 H 1.09003 * 109.46085 * 359.97438 * 14 12 10 43 43 H 1.09000 * 109.50059 * 58.68105 * 15 14 12 44 44 H 1.09001 * 109.52872 * 298.59740 * 15 14 12 45 45 H 1.08999 * 109.58408 * 294.84872 * 16 15 14 46 46 H 1.09001 * 109.70539 * 174.49457 * 16 15 14 47 47 H 0.97002 * 120.00481 * 354.24867 * 21 20 18 48 48 H 1.09003 * 109.58609 * 173.14354 * 26 17 16 49 49 H 1.08993 * 109.58780 * 293.57237 * 26 17 16 50 50 H 1.09006 * 109.56299 * 185.55064 * 27 26 17 51 51 H 1.09002 * 109.38821 * 65.51517 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0106 -0.8086 5 6 1.7579 2.1172 1.3654 6 6 2.8153 3.2480 1.4128 7 6 4.0702 2.6196 0.7724 8 6 3.5772 1.4716 -0.1259 9 1 3.9984 0.5251 0.2130 10 6 3.9732 1.7294 -1.5569 11 8 3.1195 1.8527 -2.4096 12 7 5.2760 1.8231 -1.8893 13 6 6.3072 1.6737 -0.8595 14 6 5.6608 2.0731 -3.2806 15 6 6.5251 0.9159 -3.7863 16 6 6.8972 1.1642 -5.2515 17 7 7.5325 2.4844 -5.3610 18 6 8.7598 2.6213 -5.9526 19 1 9.4609 1.7998 -5.9381 20 6 9.1030 3.8156 -6.5710 21 7 8.1617 4.6179 -7.0210 22 14 10.9009 4.2844 -6.7645 23 1 10.9990 5.5971 -7.4517 24 1 11.5981 3.2500 -7.5701 25 1 11.5346 4.3790 -5.4248 26 6 6.8286 3.6543 -4.8181 27 6 6.4549 3.3789 -3.3627 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9089 1.4125 2.1830 34 1 0.7494 2.5298 1.3944 35 1 3.0177 3.5380 2.4438 36 1 2.4820 4.1092 0.8336 37 1 4.7299 2.2301 1.5477 38 1 4.5958 3.3632 0.1732 39 1 6.5348 2.6489 -0.4291 40 1 5.9453 1.0067 -0.0770 41 1 7.2086 1.2543 -1.3062 42 1 4.7650 2.1535 -3.8964 43 1 5.9673 -0.0171 -3.7057 44 1 7.4329 0.8500 -3.1867 45 1 5.9973 1.1396 -5.8662 46 1 7.5918 0.3952 -5.5897 47 1 7.2332 4.3380 -6.9965 48 1 7.4790 4.5276 -4.8679 49 1 5.9232 3.8369 -5.3966 50 1 5.8471 4.1990 -2.9805 51 1 7.3631 3.2905 -2.7664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005950737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:11 Heat of formation + Delta-G solvation = -58.350660 kcal Electronic energy + Delta-G solvation = -27159.625102 eV Core-core repulsion = 23671.496953 eV Total energy + Delta-G solvation = -3488.128149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.68642 -39.71174 -38.35356 -36.77085 -34.63563 -33.91026 -32.20285 -31.48922 -29.96984 -28.53132 -27.90000 -26.78033 -24.41223 -24.05316 -23.40600 -22.01776 -21.12189 -20.65058 -19.90963 -19.40888 -17.88972 -17.55155 -16.65654 -16.38640 -16.11799 -15.65982 -15.55959 -15.39016 -15.33641 -15.21336 -14.51839 -14.43466 -14.31684 -14.07315 -13.92659 -13.73962 -13.52244 -13.18097 -12.89828 -12.83256 -12.62956 -12.58298 -12.46660 -12.17152 -12.13780 -11.91961 -11.84936 -11.76831 -11.68589 -11.62965 -11.51860 -11.44248 -11.29155 -11.24074 -10.66866 -10.50141 -9.64880 -9.00250 -8.28314 -5.44446 1.58663 1.61080 1.66238 1.85214 1.96485 2.64977 3.19154 3.38916 3.47209 3.58905 3.64480 3.76521 3.90960 4.06911 4.15340 4.19519 4.25579 4.31538 4.33001 4.43817 4.44493 4.47321 4.54593 4.62295 4.67453 4.67899 4.71218 4.74248 4.81056 4.86931 4.89870 4.92669 4.96230 4.98825 5.03124 5.08872 5.11339 5.11635 5.21856 5.23664 5.28982 5.34940 5.40122 5.42460 5.54265 5.60467 5.81276 6.34612 6.43635 7.00168 7.17091 7.73391 8.18350 8.97253 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.003068 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.069528 B = 9122.960049 C = 9437.211247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.082 4.082 4 H 0.055 0.945 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.112 4.112 8 C -0.101 4.101 9 H 0.121 0.879 10 C 0.509 3.491 11 O -0.591 6.591 12 N -0.606 5.606 13 C 0.070 3.930 14 C 0.155 3.845 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.615 5.615 18 C -0.355 4.355 19 H 0.057 0.943 20 C -0.077 4.077 21 N -0.944 5.944 22 Si 1.118 2.882 23 H -0.294 1.294 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.161 3.839 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.005 0.995 46 H 0.061 0.939 47 H 0.252 0.748 48 H 0.051 0.949 49 H -0.006 1.006 50 H 0.057 0.943 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -8.571 23.455 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.101 4.101 4 H 0.074 0.926 5 C -0.147 4.147 6 C -0.163 4.163 7 C -0.150 4.150 8 C -0.122 4.122 9 H 0.139 0.861 10 C 0.299 3.701 11 O -0.472 6.472 12 N -0.337 5.337 13 C -0.072 4.072 14 C 0.051 3.949 15 C -0.160 4.160 16 C 0.019 3.981 17 N -0.340 5.340 18 C -0.485 4.485 19 H 0.074 0.926 20 C -0.273 4.273 21 N -0.586 5.586 22 Si 0.942 3.058 23 H -0.220 1.220 24 H -0.201 1.201 25 H -0.201 1.201 26 C 0.035 3.965 27 C -0.161 4.161 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.023 0.977 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.012 0.988 50 H 0.076 0.924 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.461 -7.344 22.494 25.130 hybrid contribution -1.235 -0.918 -0.616 1.658 sum -9.696 -8.262 21.878 25.316 Atomic orbital electron populations 1.21743 0.95352 1.01889 1.01664 1.21520 0.96533 0.95195 1.01665 1.21959 0.92366 0.97198 0.98582 0.92615 1.22547 0.98964 0.97369 0.95833 1.22371 0.94840 0.97671 1.01420 1.22237 0.98737 0.95779 0.98268 1.22094 0.98123 1.02366 0.89596 0.86075 1.21473 0.81520 0.74985 0.92144 1.90649 1.50797 1.52600 1.53148 1.48068 1.06582 1.70476 1.08622 1.22109 0.91247 1.02934 0.90867 1.20703 0.96860 0.94769 0.82596 1.22131 0.99558 0.97187 0.97081 1.20987 0.95148 0.87621 0.94306 1.44369 1.19703 1.02855 1.67074 1.20255 0.91859 1.03264 1.33114 0.92573 1.27316 1.09217 0.96049 0.94754 1.70906 1.01754 1.41521 1.44408 0.82831 0.70354 0.75725 0.76931 1.22024 1.20057 1.20134 1.20630 0.93665 0.90854 0.91357 1.22084 0.99600 0.96681 0.97698 0.92077 0.91366 0.94447 0.94166 0.89826 0.89195 0.91286 0.89265 0.93355 0.87759 0.92800 0.91441 0.88064 0.90837 0.92062 0.91035 0.90715 0.97658 0.92064 0.93850 0.93032 0.98823 0.92389 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.79 71.98 0.70 -1.69 16 2 C -0.11 -1.93 5.28 30.59 0.16 -1.77 16 3 C -0.08 -1.61 2.17 -9.72 -0.02 -1.63 16 4 H 0.06 1.54 6.90 -2.39 -0.02 1.52 16 5 C -0.11 -1.49 5.67 31.88 0.18 -1.31 16 6 C -0.13 -1.77 6.83 31.67 0.22 -1.55 16 7 C -0.11 -1.67 4.92 31.32 0.15 -1.51 16 8 C -0.10 -1.92 2.00 -10.81 -0.02 -1.94 16 9 H 0.12 1.72 7.11 -2.39 -0.02 1.70 16 10 C 0.51 14.89 6.85 87.66 0.60 15.49 16 11 O -0.59 -23.15 14.74 -3.04 -0.04 -23.20 16 12 N -0.61 -16.90 2.73 -822.44 -2.24 -19.14 16 13 C 0.07 1.31 8.13 127.77 1.04 2.35 16 14 C 0.15 5.53 2.49 45.02 0.11 5.64 16 15 C -0.12 -4.14 5.31 30.67 0.16 -3.98 16 16 C 0.15 6.30 6.52 86.36 0.56 6.86 16 17 N -0.62 -31.67 2.85 -699.93 -2.00 -33.67 16 18 C -0.36 -20.01 9.49 84.03 0.80 -19.22 16 19 H 0.06 3.11 7.94 -2.91 -0.02 3.09 16 20 C -0.08 -4.45 4.69 84.86 0.40 -4.05 16 21 N -0.94 -58.86 12.42 21.65 0.27 -58.59 16 22 Si 1.12 50.79 29.98 68.60 2.06 52.85 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.16 7.99 4.66 86.22 0.40 8.39 16 27 C -0.12 -4.68 5.32 30.53 0.16 -4.52 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.04 8.02 -2.39 -0.02 1.03 16 33 H 0.09 0.86 7.97 -2.39 -0.02 0.85 16 34 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.92 8.12 -2.39 -0.02 0.90 16 38 H 0.05 1.00 6.68 -2.38 -0.02 0.99 16 39 H 0.07 1.15 7.48 -2.39 -0.02 1.13 16 40 H 0.10 1.22 6.19 -2.39 -0.01 1.21 16 41 H 0.07 1.44 6.45 -2.39 -0.02 1.42 16 42 H 0.06 2.62 6.90 -2.39 -0.02 2.60 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 2.43 6.72 -2.39 -0.02 2.42 16 45 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 47 H 0.25 16.19 6.69 -92.71 -0.62 15.57 16 48 H 0.05 2.85 6.32 -2.39 -0.02 2.83 16 49 H -0.01 -0.33 7.86 -2.39 -0.02 -0.35 16 50 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 51 H 0.07 2.60 7.72 -2.39 -0.02 2.59 16 Total: -1.00 -73.16 377.91 4.68 -68.48 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.03 Total: 17.70 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.61 Total: -4.43 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -3.97 Total: -111.40 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.20 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.85 kcal Total: -73.16 4.68 -68.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005950737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.131 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds