Wall clock time and date at job start Tue Mar 31 2020 09:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46700 * 2 1 4 4 N 1.46496 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.35505 * 126.98007 * 270.15729 * 4 3 2 6 6 C 1.50691 * 126.34498 * 359.97438 * 5 4 3 7 7 N 1.30516 * 107.30520 * 180.22538 * 5 4 3 8 8 N 1.28601 * 109.67661 * 359.77178 * 7 5 4 9 9 C 1.30519 * 109.67009 * 0.02562 * 8 7 5 10 10 C 1.50699 * 126.34629 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47594 * 95.48287 * 10 9 8 12 12 C 1.46900 * 111.00071 * 182.56894 * 11 10 9 13 13 C 1.50704 * 109.46769 * 188.37669 * 12 11 10 14 14 H 1.07996 * 120.00328 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99355 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99666 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00465 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47023 * 89.99943 * 17 15 13 19 19 H 1.48501 * 109.47456 * 210.00241 * 17 15 13 20 20 H 1.48506 * 109.47212 * 330.00188 * 17 15 13 21 21 C 1.46902 * 110.99870 * 306.52308 * 11 10 9 22 22 C 1.53004 * 109.47136 * 284.69391 * 21 11 10 23 23 C 1.53000 * 109.47000 * 37.98342 * 22 21 11 24 24 C 1.52997 * 109.47409 * 157.98739 * 22 21 11 25 25 C 1.52999 * 109.47099 * 277.98712 * 22 21 11 26 26 H 1.08993 * 109.47587 * 300.00004 * 1 2 3 27 27 H 1.08998 * 109.47354 * 60.00836 * 1 2 3 28 28 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47279 * 240.00062 * 2 1 3 30 30 H 1.08998 * 109.46943 * 119.99819 * 2 1 3 31 31 H 1.09001 * 109.47203 * 60.00016 * 3 2 1 32 32 H 1.08998 * 109.47275 * 299.99616 * 3 2 1 33 33 H 1.09001 * 109.47861 * 270.24693 * 6 5 4 34 34 H 1.09004 * 109.47344 * 30.25241 * 6 5 4 35 35 H 1.09005 * 109.47321 * 150.24650 * 6 5 4 36 36 H 1.09005 * 109.47089 * 335.47692 * 10 9 8 37 37 H 1.09006 * 109.47276 * 215.48618 * 10 9 8 38 38 H 1.08992 * 109.46847 * 308.37597 * 12 11 10 39 39 H 1.08995 * 109.46993 * 68.37804 * 12 11 10 40 40 H 0.96999 * 120.00006 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47295 * 44.68795 * 21 11 10 42 42 H 1.09000 * 109.47444 * 164.69760 * 21 11 10 43 43 H 1.09007 * 109.47148 * 60.10534 * 23 22 21 44 44 H 1.09004 * 109.47231 * 180.10581 * 23 22 21 45 45 H 1.08998 * 109.47463 * 300.10813 * 23 22 21 46 46 H 1.08996 * 109.47032 * 59.99776 * 24 22 21 47 47 H 1.09000 * 109.47118 * 180.02562 * 24 22 21 48 48 H 1.09004 * 109.46750 * 299.99657 * 24 22 21 49 49 H 1.08997 * 109.47235 * 98.74607 * 25 22 21 50 50 H 1.09002 * 109.47091 * 218.74702 * 25 22 21 51 51 H 1.09005 * 109.47177 * 338.74679 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3195 1.4398 1.0834 6 6 3.8865 1.4366 2.5268 7 7 5.5486 1.4459 0.6445 8 7 5.5492 1.4475 -0.6415 9 6 4.3204 1.4430 -1.0814 10 6 3.8886 1.4435 -2.5252 11 7 3.6274 0.0645 -2.9588 12 6 3.2622 0.0200 -4.3810 13 6 2.8042 -1.3704 -4.7387 14 1 2.7857 -2.1436 -3.9849 15 6 2.4076 -1.6551 -6.0281 16 7 2.0074 -2.8684 -6.3403 17 14 2.4374 -0.3174 -7.3315 18 1 3.7611 -0.3114 -8.0045 19 1 1.3735 -0.5790 -8.3339 20 1 2.2013 1.0020 -6.6921 21 6 4.7820 -0.8013 -2.6844 22 6 5.8850 -0.5196 -3.7067 23 6 5.9330 0.9802 -4.0049 24 6 7.2328 -0.9704 -3.1400 25 6 5.5921 -1.2871 -4.9974 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7781 2.4634 2.8760 34 1 2.9316 0.9189 2.6186 35 1 4.6365 0.9249 3.1300 36 1 4.6785 1.8744 -3.1405 37 1 2.9803 2.0364 -2.6326 38 1 2.4560 0.7284 -4.5713 39 1 4.1287 0.2843 -4.9870 40 1 1.7280 -3.0687 -7.2473 41 1 5.1568 -0.5999 -1.6808 42 1 4.4783 -1.8457 -2.7561 43 1 6.1435 1.5270 -3.0856 44 1 6.7176 1.1807 -4.7346 45 1 4.9722 1.3018 -4.4069 46 1 7.1985 -2.0389 -2.9275 47 1 8.0186 -0.7693 -3.8681 48 1 7.4415 -0.4235 -2.2204 49 1 5.1243 -0.6182 -5.7197 50 1 6.5243 -1.6729 -5.4102 51 1 4.9192 -2.1171 -4.7819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159180708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:54 Heat of formation + Delta-G solvation = 119.560739 kcal Electronic energy + Delta-G solvation = -28425.328604 eV Core-core repulsion = 24977.208023 eV Total energy + Delta-G solvation = -3448.120581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.227 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.97351 -39.40899 -36.16890 -33.91809 -32.94868 -32.59722 -31.86780 -29.38785 -28.03115 -27.22624 -26.62633 -26.13233 -25.64401 -23.73959 -22.08565 -21.05091 -20.59580 -19.88355 -18.27940 -16.96998 -16.79526 -16.12092 -15.38775 -15.33213 -14.86921 -14.47968 -14.17100 -13.82627 -13.65619 -13.52450 -13.26132 -13.05056 -12.86091 -12.67891 -12.52257 -12.27759 -12.21985 -11.68763 -11.57160 -11.50216 -11.37721 -11.17386 -11.07716 -10.92689 -10.76019 -10.72973 -10.64614 -10.47309 -10.16922 -10.03522 -9.91085 -9.81509 -9.76151 -9.62370 -9.21525 -8.73605 -8.53224 -7.16863 -6.06991 -3.99471 1.98887 2.65302 3.09110 3.24277 3.32088 3.34194 4.38889 4.40466 4.52018 4.61569 4.81491 4.83918 5.00759 5.08261 5.24055 5.27571 5.30662 5.36180 5.40718 5.51514 5.54136 5.59700 5.61435 5.65245 5.83998 5.93026 6.00413 6.10595 6.14508 6.16193 6.24458 6.27004 6.32904 6.34191 6.39187 6.42799 6.52814 6.59356 6.65184 6.74083 6.91232 6.96274 6.99274 7.08264 7.20888 7.54064 7.60502 7.84990 7.98294 8.62794 9.00462 9.01074 9.54586 11.06034 Molecular weight = 308.23amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005614 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.192607 B = 4986.334387 C = 6190.743598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.111 3.889 4 N -0.461 5.461 5 C 0.157 3.843 6 C -0.063 4.063 7 N -0.300 5.300 8 N -0.295 5.295 9 C 0.205 3.795 10 C 0.081 3.919 11 N -0.514 5.514 12 C 0.135 3.865 13 C -0.491 4.491 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.900 5.900 17 Si 0.862 3.138 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.075 3.925 22 C -0.087 4.087 23 C -0.173 4.173 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 9.159 13.028 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.012 4.012 4 N -0.151 5.151 5 C -0.110 4.110 6 C -0.122 4.122 7 N -0.141 5.141 8 N -0.136 5.136 9 C -0.063 4.063 10 C -0.049 4.049 11 N -0.238 5.238 12 C 0.009 3.991 13 C -0.529 4.529 14 H 0.097 0.903 15 C -0.129 4.129 16 N -0.539 5.539 17 Si 0.690 3.310 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.053 4.053 22 C -0.089 4.089 23 C -0.229 4.229 24 C -0.191 4.191 25 C -0.197 4.197 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.044 0.956 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.042 8.896 13.152 15.912 hybrid contribution -0.871 0.896 -1.306 1.808 sum 0.171 9.793 11.846 15.370 Atomic orbital electron populations 1.21639 0.94417 1.02604 1.01584 1.21930 0.96700 0.94843 1.04620 1.21961 0.75277 0.99796 1.04172 1.46142 1.08824 1.53872 1.06279 1.24644 0.87766 1.06224 0.92343 1.20130 1.02299 1.03380 0.86364 1.74183 1.17149 1.19081 1.03679 1.74230 1.17208 1.19463 1.02660 1.24813 0.86877 1.02418 0.92169 1.21744 1.02399 0.95068 0.85640 1.62382 1.35116 1.04109 1.22216 1.20877 0.95744 0.99101 0.83338 1.20814 1.42252 0.94110 0.95732 0.90303 1.24782 0.95286 0.94861 0.97990 1.69872 1.45043 1.19295 1.19686 0.87079 0.78121 0.83283 0.82516 1.20135 1.21382 1.19229 1.22265 0.88125 0.98298 0.96646 1.21022 0.95671 0.94780 0.97397 1.22880 1.01765 0.96917 1.01356 1.21835 0.96275 1.00593 1.00379 1.22395 0.99705 1.02012 0.95587 0.93196 0.92062 0.91859 0.88287 0.92056 0.89499 0.88573 0.90225 0.90706 0.89065 0.87393 0.90549 0.96095 0.95686 0.92752 0.92334 0.90392 0.91149 0.93738 0.90497 0.93296 0.93648 0.92698 0.92433 0.95643 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.14 -1.65 6.26 -26.73 -0.17 -1.82 16 3 C 0.11 1.19 5.68 -4.05 -0.02 1.16 16 4 N -0.46 -6.38 2.75 -110.67 -0.30 -6.68 16 5 C 0.16 2.19 8.03 -154.98 -1.24 0.94 16 6 C -0.06 -0.55 10.05 36.00 0.36 -0.19 16 7 N -0.30 -5.19 12.21 32.79 0.40 -4.79 16 8 N -0.30 -5.33 10.52 32.80 0.35 -4.98 16 9 C 0.20 3.34 5.94 -154.99 -0.92 2.42 16 10 C 0.08 1.32 4.61 -4.98 -0.02 1.30 16 11 N -0.51 -9.72 4.80 -237.51 -1.14 -10.86 16 12 C 0.13 2.90 2.77 -4.97 -0.01 2.89 16 13 C -0.49 -12.50 6.16 -34.44 -0.21 -12.72 16 14 H 0.08 2.25 7.26 -52.49 -0.38 1.86 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -26.06 13.96 55.43 0.77 -25.29 16 17 Si 0.86 20.32 26.80 -169.99 -4.56 15.76 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C 0.08 1.44 4.61 -3.82 -0.02 1.42 16 22 C -0.09 -1.58 0.77 -154.51 -0.12 -1.70 16 23 C -0.17 -2.95 6.12 37.16 0.23 -2.73 16 24 C -0.13 -2.22 8.13 37.16 0.30 -1.91 16 25 C -0.14 -2.85 7.44 37.16 0.28 -2.57 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.69 7.82 -51.93 -0.41 0.28 16 32 H 0.10 1.02 7.31 -51.93 -0.38 0.64 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 1.78 3.10 -56.36 -0.17 1.61 16 37 H 0.08 1.15 7.38 -51.93 -0.38 0.76 16 38 H 0.02 0.47 7.15 -51.93 -0.37 0.10 16 39 H 0.03 0.56 1.88 -51.93 -0.10 0.46 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.06 1.14 5.54 -51.93 -0.29 0.85 16 42 H 0.08 1.67 6.52 -51.93 -0.34 1.33 16 43 H 0.07 1.19 5.76 -51.93 -0.30 0.89 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.36 3.37 -51.93 -0.18 1.19 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 48 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 49 H 0.06 1.24 4.94 -51.93 -0.26 0.98 16 50 H 0.02 0.47 7.71 -51.93 -0.40 0.07 16 51 H 0.09 2.12 5.41 -51.93 -0.28 1.84 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -29.88 370.60 -8.65 -38.54 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.46 Total: 5.43 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.30 Total: -12.72 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.07 Total: -52.59 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.56 Total: 15.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.88 -8.65 -38.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159180708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.096 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds