Wall clock time and date at job start Tue Mar 31 2020 09:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46700 * 2 1 4 4 N 1.46496 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.35505 * 126.98007 * 270.15729 * 4 3 2 6 6 C 1.50691 * 126.34498 * 359.97438 * 5 4 3 7 7 N 1.30516 * 107.30520 * 180.22538 * 5 4 3 8 8 N 1.28601 * 109.67661 * 359.77178 * 7 5 4 9 9 C 1.30519 * 109.67009 * 0.02562 * 8 7 5 10 10 C 1.50699 * 126.34629 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47594 * 95.48287 * 10 9 8 12 12 C 1.46900 * 111.00071 * 182.56894 * 11 10 9 13 13 C 1.50704 * 109.46769 * 188.37669 * 12 11 10 14 14 H 1.07996 * 120.00328 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99355 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99666 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00465 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47023 * 89.99943 * 17 15 13 19 19 H 1.48501 * 109.47456 * 210.00241 * 17 15 13 20 20 H 1.48506 * 109.47212 * 330.00188 * 17 15 13 21 21 C 1.46902 * 110.99870 * 306.52308 * 11 10 9 22 22 C 1.53004 * 109.47136 * 284.69391 * 21 11 10 23 23 C 1.53000 * 109.47000 * 37.98342 * 22 21 11 24 24 C 1.52997 * 109.47409 * 157.98739 * 22 21 11 25 25 C 1.52999 * 109.47099 * 277.98712 * 22 21 11 26 26 H 1.08993 * 109.47587 * 300.00004 * 1 2 3 27 27 H 1.08998 * 109.47354 * 60.00836 * 1 2 3 28 28 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47279 * 240.00062 * 2 1 3 30 30 H 1.08998 * 109.46943 * 119.99819 * 2 1 3 31 31 H 1.09001 * 109.47203 * 60.00016 * 3 2 1 32 32 H 1.08998 * 109.47275 * 299.99616 * 3 2 1 33 33 H 1.09001 * 109.47861 * 270.24693 * 6 5 4 34 34 H 1.09004 * 109.47344 * 30.25241 * 6 5 4 35 35 H 1.09005 * 109.47321 * 150.24650 * 6 5 4 36 36 H 1.09005 * 109.47089 * 335.47692 * 10 9 8 37 37 H 1.09006 * 109.47276 * 215.48618 * 10 9 8 38 38 H 1.08992 * 109.46847 * 308.37597 * 12 11 10 39 39 H 1.08995 * 109.46993 * 68.37804 * 12 11 10 40 40 H 0.96999 * 120.00006 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47295 * 44.68795 * 21 11 10 42 42 H 1.09000 * 109.47444 * 164.69760 * 21 11 10 43 43 H 1.09007 * 109.47148 * 60.10534 * 23 22 21 44 44 H 1.09004 * 109.47231 * 180.10581 * 23 22 21 45 45 H 1.08998 * 109.47463 * 300.10813 * 23 22 21 46 46 H 1.08996 * 109.47032 * 59.99776 * 24 22 21 47 47 H 1.09000 * 109.47118 * 180.02562 * 24 22 21 48 48 H 1.09004 * 109.46750 * 299.99657 * 24 22 21 49 49 H 1.08997 * 109.47235 * 98.74607 * 25 22 21 50 50 H 1.09002 * 109.47091 * 218.74702 * 25 22 21 51 51 H 1.09005 * 109.47177 * 338.74679 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3195 1.4398 1.0834 6 6 3.8865 1.4366 2.5268 7 7 5.5486 1.4459 0.6445 8 7 5.5492 1.4475 -0.6415 9 6 4.3204 1.4430 -1.0814 10 6 3.8886 1.4435 -2.5252 11 7 3.6274 0.0645 -2.9588 12 6 3.2622 0.0200 -4.3810 13 6 2.8042 -1.3704 -4.7387 14 1 2.7857 -2.1436 -3.9849 15 6 2.4076 -1.6551 -6.0281 16 7 2.0074 -2.8684 -6.3403 17 14 2.4374 -0.3174 -7.3315 18 1 3.7611 -0.3114 -8.0045 19 1 1.3735 -0.5790 -8.3339 20 1 2.2013 1.0020 -6.6921 21 6 4.7820 -0.8013 -2.6844 22 6 5.8850 -0.5196 -3.7067 23 6 5.9330 0.9802 -4.0049 24 6 7.2328 -0.9704 -3.1400 25 6 5.5921 -1.2871 -4.9974 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7781 2.4634 2.8760 34 1 2.9316 0.9189 2.6186 35 1 4.6365 0.9249 3.1300 36 1 4.6785 1.8744 -3.1405 37 1 2.9803 2.0364 -2.6326 38 1 2.4560 0.7284 -4.5713 39 1 4.1287 0.2843 -4.9870 40 1 1.7280 -3.0687 -7.2473 41 1 5.1568 -0.5999 -1.6808 42 1 4.4783 -1.8457 -2.7561 43 1 6.1435 1.5270 -3.0856 44 1 6.7176 1.1807 -4.7346 45 1 4.9722 1.3018 -4.4069 46 1 7.1985 -2.0389 -2.9275 47 1 8.0186 -0.7693 -3.8681 48 1 7.4415 -0.4235 -2.2204 49 1 5.1243 -0.6182 -5.7197 50 1 6.5243 -1.6729 -5.4102 51 1 4.9192 -2.1171 -4.7819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159180708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:54 Heat of formation + Delta-G solvation = 101.807502 kcal Electronic energy + Delta-G solvation = -28426.098442 eV Core-core repulsion = 24977.208023 eV Total energy + Delta-G solvation = -3448.890419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.227 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.12788 -40.95585 -37.17244 -35.37826 -34.81793 -33.60434 -33.15703 -30.86246 -29.58854 -28.45902 -27.67285 -27.52497 -27.12300 -25.41864 -23.04423 -22.49020 -21.83437 -21.14074 -19.83096 -18.91216 -17.89755 -17.36433 -16.84520 -16.64958 -16.07097 -15.96662 -15.84127 -15.01240 -14.97389 -14.72989 -14.49482 -14.42957 -14.25077 -13.69294 -13.53206 -13.35604 -13.23395 -13.19893 -13.06539 -12.88871 -12.62265 -12.57626 -12.43065 -12.38082 -12.30839 -12.19781 -12.03370 -11.82794 -11.72167 -11.63817 -11.49426 -11.25576 -11.20214 -11.04183 -10.93553 -10.60338 -9.93306 -8.71555 -8.16543 -6.11836 0.86730 1.37439 1.39925 1.47186 1.63628 1.88539 2.40695 3.17571 3.23047 3.48160 3.57477 3.71529 3.91389 3.94276 4.01747 4.05565 4.10990 4.22550 4.31095 4.42388 4.51378 4.55935 4.64441 4.70304 4.72936 4.77538 4.80875 4.83952 4.87959 4.90539 4.94452 4.99468 5.03265 5.04784 5.09742 5.13297 5.17684 5.25387 5.30678 5.36438 5.40158 5.42947 5.43592 5.56868 5.66838 5.83132 6.01288 6.09264 6.33559 6.70185 6.87684 7.45259 7.82675 9.00218 Molecular weight = 308.23amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005614 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.192607 B = 4986.334387 C = 6190.743598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.108 3.892 4 N -0.460 5.460 5 C 0.171 3.829 6 C -0.063 4.063 7 N -0.343 5.343 8 N -0.320 5.320 9 C 0.191 3.809 10 C 0.085 3.915 11 N -0.519 5.519 12 C 0.145 3.855 13 C -0.474 4.474 14 H 0.033 0.967 15 C 0.019 3.981 16 N -0.950 5.950 17 Si 0.919 3.081 18 H -0.269 1.269 19 H -0.292 1.292 20 H -0.243 1.243 21 C 0.089 3.911 22 C -0.086 4.086 23 C -0.165 4.165 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.047 0.953 50 H 0.039 0.961 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 12.068 14.315 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C -0.013 4.013 4 N -0.150 5.150 5 C -0.097 4.097 6 C -0.121 4.121 7 N -0.184 5.184 8 N -0.160 5.160 9 C -0.077 4.077 10 C -0.043 4.043 11 N -0.243 5.243 12 C 0.019 3.981 13 C -0.513 4.513 14 H 0.052 0.948 15 C -0.178 4.178 16 N -0.592 5.592 17 Si 0.744 3.256 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.167 1.167 21 C -0.040 4.040 22 C -0.087 4.087 23 C -0.221 4.221 24 C -0.183 4.183 25 C -0.188 4.188 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.898 11.828 14.464 18.706 hybrid contribution -0.842 -0.091 -1.544 1.761 sum 0.056 11.737 12.920 17.455 Atomic orbital electron populations 1.21603 0.92912 1.02386 1.02823 1.21812 0.97922 0.95217 1.02533 1.22224 0.73463 0.99326 1.06325 1.46326 1.09884 1.53151 1.05611 1.25536 0.86916 1.03153 0.94116 1.20403 1.03406 1.05367 0.82974 1.74113 1.19261 1.21474 1.03503 1.74119 1.18313 1.20175 1.03440 1.24645 0.87132 1.03426 0.92542 1.21695 1.03406 0.93117 0.86104 1.62206 1.35457 1.06066 1.20543 1.20668 0.96010 0.96345 0.85113 1.20889 1.40861 0.95017 0.94532 0.94828 1.25500 0.95278 0.96777 1.00233 1.70033 1.47339 1.21752 1.20124 0.86147 0.78140 0.81540 0.79775 1.19421 1.21832 1.16653 1.22018 0.88573 0.96415 0.96994 1.20991 0.96067 0.95729 0.95922 1.22779 1.02021 0.95404 1.01931 1.21756 0.95661 1.00321 1.00598 1.22232 0.99420 1.00693 0.96433 0.90067 0.92637 0.92878 0.92882 0.91670 0.85461 0.88324 0.87758 0.88437 0.88608 0.87036 0.88837 0.95656 0.94711 0.92983 0.92448 0.93952 0.90739 0.92246 0.90962 0.93603 0.91997 0.92892 0.93441 0.94170 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.14 -3.00 6.26 30.59 0.19 -2.81 16 3 C 0.11 2.02 5.68 86.38 0.49 2.51 16 4 N -0.46 -11.84 2.75 -504.04 -1.38 -13.22 16 5 C 0.17 4.38 8.03 137.97 1.11 5.48 16 6 C -0.06 -0.88 10.05 71.23 0.72 -0.17 16 7 N -0.34 -11.51 12.21 -50.16 -0.61 -12.12 16 8 N -0.32 -11.32 10.52 -50.16 -0.53 -11.85 16 9 C 0.19 6.03 5.94 137.98 0.82 6.85 16 10 C 0.09 2.70 4.61 85.56 0.39 3.10 16 11 N -0.52 -19.79 4.80 -905.35 -4.35 -24.14 16 12 C 0.14 6.22 2.77 85.56 0.24 6.45 16 13 C -0.47 -25.09 6.16 25.60 0.16 -24.93 16 14 H 0.03 2.05 7.26 -2.91 -0.02 2.03 16 15 C 0.02 1.03 5.47 84.65 0.46 1.49 16 16 N -0.95 -57.33 13.96 21.45 0.30 -57.03 16 17 Si 0.92 41.67 26.80 68.60 1.84 43.51 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 21 C 0.09 3.50 4.61 86.30 0.40 3.90 16 22 C -0.09 -3.09 0.77 -52.18 -0.04 -3.13 16 23 C -0.17 -5.36 6.12 71.98 0.44 -4.92 16 24 C -0.13 -4.09 8.13 71.98 0.59 -3.51 16 25 C -0.13 -5.36 7.44 71.98 0.54 -4.82 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.13 1.40 7.82 -2.39 -0.02 1.38 16 32 H 0.10 1.83 7.31 -2.39 -0.02 1.81 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.96 7.87 -2.38 -0.02 0.94 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 3.49 3.10 -6.55 -0.02 3.46 16 37 H 0.09 2.62 7.38 -2.38 -0.02 2.60 16 38 H 0.03 1.09 7.15 -2.39 -0.02 1.07 16 39 H 0.04 1.49 1.88 -2.39 0.00 1.48 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.06 2.29 5.54 -2.39 -0.01 2.28 16 42 H 0.04 1.95 6.52 -2.39 -0.02 1.93 16 43 H 0.07 2.40 5.76 -2.38 -0.01 2.38 16 44 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.07 2.41 3.37 -2.39 -0.01 2.41 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 48 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 49 H 0.05 2.01 4.94 -2.39 -0.01 2.00 16 50 H 0.04 1.48 7.71 -2.39 -0.02 1.47 16 51 H 0.05 2.65 5.41 -2.38 -0.01 2.63 16 Total: -1.00 -68.54 370.60 3.32 -65.22 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.85 Total: 25.91 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 7.21 Total: -16.28 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.58 Total: -118.35 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.84 Total: 43.51 kcal Total: -68.54 3.32 -65.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159180708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.026 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds