Wall clock time and date at job start Tue Mar 31 2020 09:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47199 * 120.00170 * 2 1 3 5 5 O 1.21280 * 120.00238 * 105.07396 * 4 2 1 6 6 N 1.34777 * 119.99743 * 285.07452 * 4 2 1 7 7 C 1.46505 * 119.99593 * 179.97438 * 6 4 2 8 8 H 1.08994 * 110.81737 * 323.11850 * 7 6 4 9 9 C 1.54894 * 110.75363 * 86.45710 * 7 6 4 10 10 C 1.54264 * 104.30919 * 156.32362 * 9 7 6 11 11 C 1.53871 * 106.60109 * 336.31645 * 10 9 7 12 12 H 1.09003 * 110.03206 * 119.28748 * 11 10 9 13 13 C 1.50704 * 110.03810 * 240.71936 * 11 10 9 14 14 H 1.07997 * 119.99929 * 118.54254 * 13 11 10 15 15 C 1.37876 * 119.99642 * 298.55039 * 13 11 10 16 16 N 1.31512 * 120.00145 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99656 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47471 * 89.99711 * 17 15 13 19 19 H 1.48502 * 109.46901 * 209.99872 * 17 15 13 20 20 H 1.48505 * 109.46925 * 329.99312 * 17 15 13 21 21 C 1.54270 * 106.59936 * 0.02562 * 11 10 9 22 22 N 1.46905 * 109.46738 * 240.00227 * 2 1 3 23 23 C 1.48001 * 111.00017 * 79.69814 * 22 2 1 24 24 C 1.50450 * 112.82375 * 191.34648 * 23 22 2 25 25 C 1.54301 * 108.49952 * 93.72564 * 24 23 22 26 26 C 1.45883 * 112.18650 * 281.45641 * 25 24 23 27 27 C 1.54315 * 112.18029 * 61.12517 * 26 25 24 28 28 C 1.48004 * 110.99824 * 310.97312 * 22 2 1 29 29 H 1.09005 * 109.46948 * 300.81747 * 1 2 3 30 30 H 1.09002 * 109.47584 * 60.81329 * 1 2 3 31 31 H 1.08997 * 109.47644 * 180.81441 * 1 2 3 32 32 H 0.96995 * 120.00209 * 359.97438 * 6 4 2 33 33 H 1.08994 * 110.48900 * 37.57498 * 9 7 6 34 34 H 1.08997 * 110.48215 * 275.06487 * 9 7 6 35 35 H 1.08998 * 110.03615 * 95.60812 * 10 9 7 36 36 H 1.09005 * 110.02819 * 216.98757 * 10 9 7 37 37 H 0.97008 * 120.00029 * 180.02562 * 16 15 13 38 38 H 1.08990 * 110.48832 * 142.28594 * 21 11 10 39 39 H 1.09002 * 110.47970 * 264.79853 * 21 11 10 40 40 H 1.08999 * 108.81113 * 312.20200 * 23 22 2 41 41 H 1.08992 * 108.81499 * 70.48301 * 23 22 2 42 42 H 1.09000 * 109.63052 * 334.01699 * 24 23 22 43 43 H 1.09001 * 109.62856 * 213.42789 * 24 23 22 44 44 H 1.09008 * 108.93898 * 160.76885 * 25 24 23 45 45 H 1.08994 * 108.94494 * 42.15805 * 25 24 23 46 46 H 1.08999 * 108.93950 * 300.43173 * 26 25 24 47 47 H 1.09002 * 108.94028 * 181.82224 * 26 25 24 48 48 H 1.09001 * 109.63269 * 161.75597 * 27 26 25 49 49 H 1.09005 * 109.62750 * 41.16704 * 27 26 25 50 50 H 1.09000 * 108.80688 * 205.70555 * 28 22 2 51 51 H 1.08998 * 108.80978 * 323.97692 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4920 -1.8291 1.1396 6 7 1.9707 -0.1026 2.4318 7 6 2.4586 -0.7935 3.6280 8 1 2.2305 -1.8583 3.5805 9 6 3.9797 -0.5656 3.8116 10 6 4.2191 -0.7869 5.3193 11 6 2.8740 -0.5289 6.0206 12 1 2.5457 -1.4287 6.5411 13 6 3.0106 0.6116 6.9962 14 1 2.4222 1.5076 6.8651 15 6 3.8870 0.5111 8.0558 16 7 4.6032 -0.5803 8.2156 17 14 4.0568 1.9251 9.2647 18 1 3.0850 1.7479 10.3735 19 1 5.4364 1.9438 9.8138 20 1 3.7842 3.2077 8.5675 21 6 1.8638 -0.1606 4.9144 22 7 2.0196 -0.6925 -1.1995 23 6 1.9634 0.1937 -2.3836 24 6 2.1933 -0.5429 -3.6752 25 6 0.8233 -0.9466 -4.2592 26 6 0.2661 -2.1205 -3.5961 27 6 0.0255 -1.8801 -2.0909 28 6 1.3421 -1.9969 -1.3725 29 1 -0.3633 0.5265 0.8826 30 1 -0.3634 0.5011 -0.8972 31 1 -0.3634 -1.0275 0.0146 32 1 1.6035 0.7921 2.5044 33 1 4.2500 0.4513 3.5275 34 1 4.5471 -1.2882 3.2251 35 1 4.5437 -1.8117 5.4995 36 1 4.9715 -0.0876 5.6844 37 1 5.2195 -0.6511 8.9614 38 1 0.8857 -0.5887 5.1331 39 1 1.7907 0.9220 4.8098 40 1 0.9835 0.6697 -2.4202 41 1 2.7240 0.9674 -2.2800 42 1 2.7886 -1.4362 -3.4863 43 1 2.7146 0.1060 -4.3790 44 1 0.9412 -1.1628 -5.3211 45 1 0.1303 -0.1132 -4.1444 46 1 0.9569 -2.9552 -3.7151 47 1 -0.6816 -2.3776 -4.0693 48 1 -0.6688 -2.6276 -1.7071 49 1 -0.3864 -0.8822 -1.9408 50 1 1.9951 -2.6594 -1.9407 51 1 1.1687 -2.4359 -0.3900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331465708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:48 Heat of formation + Delta-G solvation = -47.167834 kcal Electronic energy + Delta-G solvation = -26659.177868 eV Core-core repulsion = 23171.534643 eV Total energy + Delta-G solvation = -3487.643225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51176 -38.88421 -37.01115 -35.01846 -33.69946 -32.47524 -32.01750 -30.38664 -28.08433 -27.12776 -26.82771 -25.15270 -24.11325 -23.13047 -20.83108 -20.33942 -19.96470 -19.53170 -18.83928 -17.12149 -16.53090 -16.22519 -15.78210 -15.52505 -14.97149 -14.70056 -14.41188 -14.35789 -14.10635 -13.84358 -13.59722 -13.23909 -13.02292 -12.54141 -12.51438 -12.38951 -12.25212 -12.05908 -11.82913 -11.76264 -11.37849 -11.10907 -10.90097 -10.89057 -10.82637 -10.73999 -10.64886 -10.52775 -10.40446 -10.31190 -9.93086 -9.62600 -9.39615 -9.18364 -8.67981 -8.51173 -8.33768 -8.22256 -5.99326 -4.03017 2.91072 3.27800 3.30577 3.37790 3.39977 3.90671 4.38732 4.44509 4.48603 4.67312 4.81268 4.86094 4.90602 4.98531 5.02513 5.19805 5.21909 5.30876 5.35492 5.41285 5.49606 5.56761 5.61241 5.69027 5.72389 5.74187 5.76863 5.83690 5.86750 5.89857 5.91505 6.01235 6.09796 6.25952 6.41039 6.41576 6.56918 6.66011 6.78349 6.91282 6.96916 7.02186 7.08614 7.30962 7.39590 7.74178 7.89492 7.93856 8.00308 8.47006 8.58682 9.00092 9.60701 11.09783 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.038161 B = 0.002518 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.561159 B =11116.572529 C =11184.844240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.099 0.901 4 C 0.517 3.483 5 O -0.528 6.528 6 N -0.719 5.719 7 C 0.137 3.863 8 H 0.084 0.916 9 C -0.131 4.131 10 C -0.090 4.090 11 C 0.048 3.952 12 H 0.028 0.972 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.888 5.888 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.117 4.117 22 N -0.528 5.528 23 C 0.063 3.937 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.161 4.161 28 C 0.060 3.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.260 0.740 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 1.491 -23.285 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 H 0.117 0.883 4 C 0.302 3.698 5 O -0.404 6.404 6 N -0.370 5.370 7 C 0.033 3.967 8 H 0.102 0.898 9 C -0.169 4.169 10 C -0.129 4.129 11 C 0.029 3.971 12 H 0.046 0.954 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.155 4.155 22 N -0.252 5.252 23 C -0.064 4.064 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.200 4.200 28 C -0.067 4.067 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.228 0.772 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.228 0.477 -23.174 24.596 hybrid contribution -0.806 1.439 0.650 1.772 sum -9.034 1.915 -22.524 24.344 Atomic orbital electron populations 1.22611 0.95400 1.03379 1.02593 1.21559 0.94119 0.98529 0.90366 0.88292 1.20329 0.78617 0.86690 0.84154 1.90652 1.44782 1.19252 1.85666 1.46156 1.63733 1.19738 1.07349 1.22226 0.94765 0.96693 0.83019 0.89805 1.22758 0.94689 1.00218 0.99283 1.22014 1.00674 1.00049 0.90134 1.19194 0.89773 0.96887 0.91268 0.95389 1.21214 1.22988 1.01428 1.09487 0.92736 1.24988 0.95820 0.95663 0.97662 1.69987 1.25672 1.26472 1.30444 0.86657 0.77272 0.82880 0.81538 1.20774 1.21302 1.19996 1.22797 0.99045 0.99609 0.94077 1.61601 1.57783 1.04061 1.01732 1.21794 1.00111 0.95049 0.89397 1.21421 0.97241 1.01482 0.95737 1.20593 0.96811 0.98565 0.99682 1.20577 1.00724 0.98583 0.95788 1.22362 0.99278 1.02767 0.95577 1.21926 0.92412 0.90442 1.01877 0.91540 0.91549 0.91102 0.77156 0.92671 0.93174 0.94221 0.91644 0.93060 0.93277 0.92068 0.94772 0.91170 0.90446 0.91134 0.92281 0.92469 0.92024 0.92611 0.91543 0.90748 0.91069 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 7.48 37.16 0.28 -1.35 16 2 C 0.07 0.74 2.66 -68.86 -0.18 0.56 16 3 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 4 C 0.52 7.74 6.83 -10.99 -0.08 7.67 16 5 O -0.53 -9.91 14.15 5.56 0.08 -9.83 16 6 N -0.72 -10.55 5.21 -51.70 -0.27 -10.82 16 7 C 0.14 2.49 3.19 -65.75 -0.21 2.28 16 8 H 0.08 1.64 7.71 -51.93 -0.40 1.24 16 9 C -0.13 -2.62 6.50 -25.07 -0.16 -2.78 16 10 C -0.09 -2.13 5.56 -25.62 -0.14 -2.27 16 11 C 0.05 1.16 2.84 -90.65 -0.26 0.91 16 12 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 13 C -0.51 -13.75 8.34 -34.44 -0.29 -14.03 16 14 H 0.05 1.43 7.55 -52.49 -0.40 1.03 16 15 C 0.06 1.66 5.07 -17.82 -0.09 1.57 16 16 N -0.89 -25.48 12.33 55.43 0.68 -24.79 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.12 -2.29 5.97 -24.89 -0.15 -2.44 16 22 N -0.53 -6.02 4.42 -229.31 -1.01 -7.04 16 23 C 0.06 0.56 4.82 -4.49 -0.02 0.54 16 24 C -0.12 -0.95 5.63 -27.32 -0.15 -1.10 16 25 C -0.12 -0.84 5.30 -29.42 -0.16 -0.99 16 26 C -0.12 -0.91 5.30 -29.41 -0.16 -1.06 16 27 C -0.16 -1.40 4.23 -27.32 -0.12 -1.52 16 28 C 0.06 0.68 4.12 -4.49 -0.02 0.66 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.51 5.75 -51.93 -0.30 0.21 16 31 H 0.07 0.70 5.72 -51.93 -0.30 0.40 16 32 H 0.39 4.74 8.54 -40.82 -0.35 4.40 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.70 7.17 -51.93 -0.37 1.33 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.16 7.57 -51.93 -0.39 0.76 16 40 H 0.03 0.28 5.36 -51.93 -0.28 0.00 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.71 7.08 -51.93 -0.37 0.35 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16 46 H 0.06 0.49 7.52 -51.93 -0.39 0.10 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.63 4.07 -51.93 -0.21 0.42 16 50 H 0.07 0.84 6.59 -51.93 -0.34 0.50 16 51 H 0.09 1.18 5.49 -51.93 -0.29 0.90 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -30.07 370.24 -10.83 -40.90 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.97 Total: 3.33 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.90 Total: -13.38 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.60 Total: -42.65 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.07 -10.83 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331465708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.264 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds