Wall clock time and date at job start Tue Mar 31 2020 09:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47199 * 120.00170 * 2 1 3 5 5 O 1.21280 * 120.00238 * 105.07396 * 4 2 1 6 6 N 1.34777 * 119.99743 * 285.07452 * 4 2 1 7 7 C 1.46505 * 119.99593 * 179.97438 * 6 4 2 8 8 H 1.08994 * 110.81737 * 323.11850 * 7 6 4 9 9 C 1.54894 * 110.75363 * 86.45710 * 7 6 4 10 10 C 1.54264 * 104.30919 * 156.32362 * 9 7 6 11 11 C 1.53871 * 106.60109 * 336.31645 * 10 9 7 12 12 H 1.09003 * 110.03206 * 119.28748 * 11 10 9 13 13 C 1.50704 * 110.03810 * 240.71936 * 11 10 9 14 14 H 1.07997 * 119.99929 * 118.54254 * 13 11 10 15 15 C 1.37876 * 119.99642 * 298.55039 * 13 11 10 16 16 N 1.31512 * 120.00145 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99656 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47471 * 89.99711 * 17 15 13 19 19 H 1.48502 * 109.46901 * 209.99872 * 17 15 13 20 20 H 1.48505 * 109.46925 * 329.99312 * 17 15 13 21 21 C 1.54270 * 106.59936 * 0.02562 * 11 10 9 22 22 N 1.46905 * 109.46738 * 240.00227 * 2 1 3 23 23 C 1.48001 * 111.00017 * 79.69814 * 22 2 1 24 24 C 1.50450 * 112.82375 * 191.34648 * 23 22 2 25 25 C 1.54301 * 108.49952 * 93.72564 * 24 23 22 26 26 C 1.45883 * 112.18650 * 281.45641 * 25 24 23 27 27 C 1.54315 * 112.18029 * 61.12517 * 26 25 24 28 28 C 1.48004 * 110.99824 * 310.97312 * 22 2 1 29 29 H 1.09005 * 109.46948 * 300.81747 * 1 2 3 30 30 H 1.09002 * 109.47584 * 60.81329 * 1 2 3 31 31 H 1.08997 * 109.47644 * 180.81441 * 1 2 3 32 32 H 0.96995 * 120.00209 * 359.97438 * 6 4 2 33 33 H 1.08994 * 110.48900 * 37.57498 * 9 7 6 34 34 H 1.08997 * 110.48215 * 275.06487 * 9 7 6 35 35 H 1.08998 * 110.03615 * 95.60812 * 10 9 7 36 36 H 1.09005 * 110.02819 * 216.98757 * 10 9 7 37 37 H 0.97008 * 120.00029 * 180.02562 * 16 15 13 38 38 H 1.08990 * 110.48832 * 142.28594 * 21 11 10 39 39 H 1.09002 * 110.47970 * 264.79853 * 21 11 10 40 40 H 1.08999 * 108.81113 * 312.20200 * 23 22 2 41 41 H 1.08992 * 108.81499 * 70.48301 * 23 22 2 42 42 H 1.09000 * 109.63052 * 334.01699 * 24 23 22 43 43 H 1.09001 * 109.62856 * 213.42789 * 24 23 22 44 44 H 1.09008 * 108.93898 * 160.76885 * 25 24 23 45 45 H 1.08994 * 108.94494 * 42.15805 * 25 24 23 46 46 H 1.08999 * 108.93950 * 300.43173 * 26 25 24 47 47 H 1.09002 * 108.94028 * 181.82224 * 26 25 24 48 48 H 1.09001 * 109.63269 * 161.75597 * 27 26 25 49 49 H 1.09005 * 109.62750 * 41.16704 * 27 26 25 50 50 H 1.09000 * 108.80688 * 205.70555 * 28 22 2 51 51 H 1.08998 * 108.80978 * 323.97692 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4920 -1.8291 1.1396 6 7 1.9707 -0.1026 2.4318 7 6 2.4586 -0.7935 3.6280 8 1 2.2305 -1.8583 3.5805 9 6 3.9797 -0.5656 3.8116 10 6 4.2191 -0.7869 5.3193 11 6 2.8740 -0.5289 6.0206 12 1 2.5457 -1.4287 6.5411 13 6 3.0106 0.6116 6.9962 14 1 2.4222 1.5076 6.8651 15 6 3.8870 0.5111 8.0558 16 7 4.6032 -0.5803 8.2156 17 14 4.0568 1.9251 9.2647 18 1 3.0850 1.7479 10.3735 19 1 5.4364 1.9438 9.8138 20 1 3.7842 3.2077 8.5675 21 6 1.8638 -0.1606 4.9144 22 7 2.0196 -0.6925 -1.1995 23 6 1.9634 0.1937 -2.3836 24 6 2.1933 -0.5429 -3.6752 25 6 0.8233 -0.9466 -4.2592 26 6 0.2661 -2.1205 -3.5961 27 6 0.0255 -1.8801 -2.0909 28 6 1.3421 -1.9969 -1.3725 29 1 -0.3633 0.5265 0.8826 30 1 -0.3634 0.5011 -0.8972 31 1 -0.3634 -1.0275 0.0146 32 1 1.6035 0.7921 2.5044 33 1 4.2500 0.4513 3.5275 34 1 4.5471 -1.2882 3.2251 35 1 4.5437 -1.8117 5.4995 36 1 4.9715 -0.0876 5.6844 37 1 5.2195 -0.6511 8.9614 38 1 0.8857 -0.5887 5.1331 39 1 1.7907 0.9220 4.8098 40 1 0.9835 0.6697 -2.4202 41 1 2.7240 0.9674 -2.2800 42 1 2.7886 -1.4362 -3.4863 43 1 2.7146 0.1060 -4.3790 44 1 0.9412 -1.1628 -5.3211 45 1 0.1303 -0.1132 -4.1444 46 1 0.9569 -2.9552 -3.7151 47 1 -0.6816 -2.3776 -4.0693 48 1 -0.6688 -2.6276 -1.7071 49 1 -0.3864 -0.8822 -1.9408 50 1 1.9951 -2.6594 -1.9407 51 1 1.1687 -2.4359 -0.3900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331465708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:47 Heat of formation + Delta-G solvation = -65.783336 kcal Electronic energy + Delta-G solvation = -26659.985097 eV Core-core repulsion = 23171.534643 eV Total energy + Delta-G solvation = -3488.450454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48879 -39.99705 -38.56460 -35.83396 -35.30992 -33.81929 -33.15235 -31.30331 -29.91316 -28.63877 -27.67421 -25.99428 -25.76682 -24.29781 -21.61630 -21.43793 -21.35351 -20.77272 -20.31557 -18.35826 -18.09989 -17.27740 -16.89497 -16.64575 -16.47703 -16.08049 -15.79671 -15.62826 -14.95408 -14.70639 -14.45621 -14.42793 -14.17526 -13.91677 -13.72124 -13.60772 -13.26453 -13.04998 -12.98892 -12.76296 -12.71829 -12.62099 -12.46371 -12.32521 -12.20905 -12.04403 -11.67391 -11.55579 -11.53806 -11.41308 -11.36814 -11.13851 -11.04757 -10.72033 -10.51540 -10.45622 -9.88215 -9.03342 -8.09496 -6.19936 1.43421 1.44118 1.53979 1.75331 2.16716 2.45744 3.01274 3.21601 3.70236 3.77626 3.88146 3.95353 4.05015 4.07669 4.13235 4.21151 4.22153 4.23154 4.35901 4.51589 4.54092 4.63928 4.71988 4.77946 4.81995 4.83978 4.86145 4.90440 4.95493 5.01158 5.05612 5.06623 5.12643 5.15654 5.18753 5.25551 5.31645 5.38524 5.40749 5.44596 5.45317 5.51391 5.66784 5.70705 5.93112 5.95871 6.10987 6.31063 6.39850 6.74294 6.92959 7.42048 7.47850 8.99547 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.038161 B = 0.002518 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.561159 B =11116.572529 C =11184.844240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 H 0.122 0.878 4 C 0.514 3.486 5 O -0.571 6.571 6 N -0.708 5.708 7 C 0.153 3.847 8 H 0.067 0.933 9 C -0.119 4.119 10 C -0.081 4.081 11 C 0.038 3.962 12 H -0.007 1.007 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.923 5.923 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.263 1.263 21 C -0.102 4.102 22 N -0.550 5.550 23 C 0.063 3.937 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.153 4.153 28 C 0.069 3.931 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.412 0.588 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.017 0.983 36 H 0.037 0.963 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.056 0.944 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 4.116 -25.173 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 H 0.139 0.861 4 C 0.301 3.699 5 O -0.449 6.449 6 N -0.360 5.360 7 C 0.048 3.952 8 H 0.085 0.915 9 C -0.157 4.157 10 C -0.120 4.120 11 C 0.019 3.981 12 H 0.011 0.989 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.563 5.563 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.140 4.140 22 N -0.274 5.274 23 C -0.063 4.063 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.192 4.192 28 C -0.058 4.058 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.992 3.141 -25.084 27.183 hybrid contribution -0.223 0.550 1.240 1.375 sum -10.215 3.691 -23.844 26.201 Atomic orbital electron populations 1.22574 0.93437 1.03114 1.04225 1.21544 0.95489 0.98608 0.88164 0.86058 1.21144 0.77502 0.86234 0.85052 1.90646 1.46611 1.21331 1.86309 1.45933 1.63503 1.20333 1.06242 1.21751 0.93211 0.96136 0.84148 0.91451 1.22611 0.96262 1.00658 0.96219 1.21808 0.99601 0.97820 0.92783 1.19199 0.91398 0.95026 0.92509 0.98854 1.21609 1.22648 1.02080 1.09881 0.91990 1.25821 0.95666 0.98069 0.99664 1.70134 1.26474 1.28524 1.31126 0.85609 0.76990 0.80142 0.79236 1.20284 1.21491 1.18691 1.22581 0.98139 1.00580 0.92681 1.61526 1.58528 1.04541 1.02856 1.21873 1.01077 0.94693 0.88617 1.21425 0.97730 1.00866 0.95770 1.20573 0.96294 0.98444 1.00051 1.20564 1.01151 0.98746 0.95026 1.22277 0.97654 1.03239 0.96043 1.21739 0.93479 0.90386 1.00181 0.90359 0.89452 0.92321 0.75092 0.91512 0.93667 0.96400 0.94456 0.93260 0.91991 0.90575 0.93228 0.90812 0.92383 0.89685 0.91301 0.91514 0.92951 0.91485 0.91642 0.89830 0.92535 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 7.48 71.98 0.54 -2.08 16 2 C 0.07 1.47 2.66 44.17 0.12 1.59 16 3 H 0.12 1.90 7.94 -2.39 -0.02 1.88 16 4 C 0.51 14.80 6.83 87.66 0.60 15.40 16 5 O -0.57 -21.69 14.15 -3.03 -0.04 -21.74 16 6 N -0.71 -19.48 5.21 -435.88 -2.27 -21.75 16 7 C 0.15 5.47 3.19 46.40 0.15 5.62 16 8 H 0.07 2.68 7.71 -2.39 -0.02 2.66 16 9 C -0.12 -4.77 6.50 31.67 0.21 -4.56 16 10 C -0.08 -3.98 5.56 31.32 0.17 -3.81 16 11 C 0.04 1.87 2.84 -10.81 -0.03 1.84 16 12 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 13 C -0.52 -28.15 8.34 25.60 0.21 -27.94 16 14 H 0.06 3.17 7.55 -2.91 -0.02 3.15 16 15 C 0.01 0.34 5.07 84.65 0.43 0.77 16 16 N -0.92 -54.53 12.33 21.45 0.26 -54.27 16 17 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 C -0.10 -3.88 5.97 31.79 0.19 -3.69 16 22 N -0.55 -11.78 4.42 -879.39 -3.89 -15.67 16 23 C 0.06 0.96 4.82 85.27 0.41 1.37 16 24 C -0.12 -1.64 5.63 30.21 0.17 -1.47 16 25 C -0.12 -1.33 5.30 28.85 0.15 -1.17 16 26 C -0.12 -1.58 5.30 28.86 0.15 -1.42 16 27 C -0.15 -2.45 4.23 30.21 0.13 -2.32 16 28 C 0.07 1.55 4.12 85.26 0.35 1.90 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 0.97 5.75 -2.39 -0.01 0.96 16 31 H 0.06 1.05 5.72 -2.39 -0.01 1.04 16 32 H 0.41 8.59 8.54 -92.71 -0.79 7.79 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 2.00 7.17 -2.38 -0.02 1.98 16 37 H 0.26 14.61 8.31 -92.70 -0.77 13.83 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 40 H 0.05 0.61 5.36 -2.39 -0.01 0.59 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.03 7.08 -2.39 -0.02 1.02 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 45 H 0.07 0.67 7.52 -2.39 -0.02 0.65 16 46 H 0.05 0.80 7.52 -2.39 -0.02 0.78 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.17 4.07 -2.38 -0.01 1.16 16 50 H 0.06 1.38 6.59 -2.39 -0.02 1.37 16 51 H 0.06 1.59 5.49 -2.39 -0.01 1.57 16 Total: -1.00 -67.33 370.24 0.16 -67.17 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.12 Total: 20.94 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 3.95 Total: -19.97 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -5.89 Total: -91.68 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.33 0.16 -67.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331465708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.391 kcal (2) G-P(sol) polarization free energy of solvation -67.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds