Wall clock time and date at job start Tue Mar 31 2020 09:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47133 * 2 1 4 4 C 1.50706 * 109.46682 * 120.00358 * 2 1 3 5 5 H 1.07997 * 119.99755 * 120.00733 * 4 2 1 6 6 C 1.37879 * 119.99884 * 299.71963 * 4 2 1 7 7 N 1.31508 * 120.00102 * 0.28025 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.27868 * 6 4 2 9 9 H 1.48507 * 109.46778 * 90.00357 * 8 6 4 10 10 H 1.48498 * 109.47060 * 210.00007 * 8 6 4 11 11 H 1.48496 * 109.47140 * 330.00326 * 8 6 4 12 12 N 1.46499 * 109.46988 * 239.99615 * 2 1 3 13 13 C 1.46496 * 120.00531 * 300.00123 * 12 2 1 14 14 C 1.34782 * 119.99315 * 120.00293 * 12 2 1 15 15 O 1.21291 * 119.99652 * 184.26408 * 14 12 2 16 16 C 1.50696 * 120.00280 * 4.26145 * 14 12 2 17 17 H 1.08995 * 110.27192 * 38.80272 * 16 14 12 18 18 C 1.54600 * 110.31008 * 276.60738 * 16 14 12 19 19 C 1.54933 * 102.92094 * 219.12530 * 18 16 14 20 20 N 1.48536 * 103.22792 * 37.41313 * 19 18 16 21 21 C 1.46897 * 111.00052 * 200.27717 * 20 19 18 22 22 C 1.52997 * 109.47320 * 296.36786 * 21 20 19 23 23 C 1.53002 * 109.47403 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47274 * 59.99825 * 23 22 21 25 25 C 1.52997 * 109.47048 * 300.00392 * 24 23 22 26 26 C 1.52998 * 109.47301 * 176.36646 * 21 20 19 27 27 C 1.47903 * 105.81988 * 320.79141 * 20 19 18 28 28 H 1.09009 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47019 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.46968 * 60.00231 * 1 2 3 31 31 H 0.96996 * 120.00497 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47085 * 84.70398 * 13 12 2 33 33 H 1.09008 * 109.47116 * 204.70040 * 13 12 2 34 34 H 1.08997 * 109.47174 * 324.70073 * 13 12 2 35 35 H 1.08995 * 110.72387 * 337.48503 * 18 16 14 36 36 H 1.08999 * 110.72222 * 100.76735 * 18 16 14 37 37 H 1.08998 * 110.66605 * 278.97951 * 19 18 16 38 38 H 1.08997 * 110.66686 * 155.84655 * 19 18 16 39 39 H 1.09000 * 109.47306 * 56.36496 * 21 20 19 40 40 H 1.09000 * 109.47193 * 300.00257 * 22 21 20 41 41 H 1.09004 * 109.47370 * 59.99959 * 22 21 20 42 42 H 1.09000 * 109.47250 * 299.99726 * 23 22 21 43 43 H 1.08999 * 109.47219 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47204 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46673 * 60.00159 * 24 23 22 46 46 H 1.09000 * 109.47193 * 299.99448 * 25 24 23 47 47 H 1.09004 * 109.47370 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47389 * 300.00290 * 26 21 20 49 49 H 1.09007 * 109.46919 * 60.00393 * 26 21 20 50 50 H 1.08997 * 109.91905 * 265.97486 * 27 20 19 51 51 H 1.09004 * 110.07806 * 144.77376 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.7039 -0.2362 2.4828 7 7 0.9478 0.8331 2.6035 8 14 2.3329 -1.1123 4.0079 9 1 3.6424 -0.5356 4.4054 10 1 1.3590 -0.9389 5.1154 11 1 2.4973 -2.5589 3.7153 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1336 -0.5825 -3.1110 16 6 3.2367 1.3762 -1.7983 17 1 3.4784 1.4900 -0.7416 18 6 2.1338 2.3784 -2.2098 19 6 2.9414 3.5497 -2.8232 20 7 4.0465 2.8622 -3.5392 21 6 5.1694 3.7787 -3.7781 22 6 4.7163 4.9105 -4.7025 23 6 5.8860 5.8647 -4.9519 24 6 7.0371 5.0999 -5.6084 25 6 7.4902 3.9681 -4.6840 26 6 6.3209 3.0143 -4.4344 27 6 4.4549 1.7395 -2.6674 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7165 1.1667 3.4844 32 1 0.6914 -2.1465 -1.9164 33 1 2.4169 -2.5572 -2.0657 34 1 1.6217 -2.6196 -0.4745 35 1 1.4693 1.9372 -2.9526 36 1 1.5716 2.7126 -1.3378 37 1 3.3349 4.1975 -2.0399 38 1 2.3259 4.1177 -3.5207 39 1 5.5052 4.1971 -2.8293 40 1 4.3805 4.4922 -5.6514 41 1 3.8959 5.4551 -4.2350 42 1 6.2222 6.2831 -4.0032 43 1 5.5630 6.6712 -5.6101 44 1 7.8705 5.7795 -5.7856 45 1 6.7008 4.6815 -6.5571 46 1 7.8264 4.3864 -3.7353 47 1 8.3099 3.4229 -5.1519 48 1 6.6437 2.2080 -3.7758 49 1 5.9851 2.5960 -5.3833 50 1 5.2861 2.0458 -2.0323 51 1 4.7475 0.8822 -3.2737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343681663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:42 Heat of formation + Delta-G solvation = -51.407176 kcal Electronic energy + Delta-G solvation = -27120.428651 eV Core-core repulsion = 23632.601595 eV Total energy + Delta-G solvation = -3487.827057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06276 -38.81012 -36.78002 -35.49733 -32.65082 -32.24643 -31.02934 -29.19331 -28.86891 -28.24390 -26.11863 -25.32741 -22.87882 -22.67192 -21.59326 -20.69536 -20.56235 -19.74898 -17.91649 -16.86812 -16.56570 -16.18773 -15.27535 -15.00462 -14.73941 -14.36883 -14.29371 -14.21073 -14.01189 -13.56100 -13.25484 -12.90270 -12.80529 -12.43348 -12.29426 -12.14665 -11.92850 -11.64235 -11.59920 -11.36814 -11.27293 -11.21632 -11.11111 -11.06832 -10.94966 -10.83954 -10.71168 -10.65262 -10.48268 -10.28533 -10.25076 -10.13371 -10.01570 -9.34626 -8.91591 -8.56068 -8.18480 -7.60301 -6.20475 -4.28864 3.19615 3.27186 3.29731 3.40723 3.97149 4.05744 4.30161 4.59731 4.64743 4.81583 4.92656 5.01116 5.10735 5.14367 5.22951 5.30211 5.38429 5.42491 5.43983 5.49037 5.53249 5.68495 5.69010 5.77364 5.89855 5.90893 5.98508 6.01337 6.09892 6.11357 6.13973 6.19250 6.23307 6.24085 6.27714 6.36982 6.42066 6.48105 6.51793 6.61153 6.75158 6.93057 7.10004 7.21123 7.27309 7.42009 7.65365 7.84341 8.10640 8.47006 8.74890 9.05459 9.39738 10.84041 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003372 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.745561 B = 8302.911009 C = 8632.199776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.253 3.747 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.093 3.907 14 C 0.519 3.481 15 O -0.570 6.570 16 C -0.118 4.118 17 H 0.104 0.896 18 C -0.105 4.105 19 C 0.037 3.963 20 N -0.509 5.509 21 C 0.078 3.922 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.114 4.114 27 C 0.052 3.948 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 8.674 -10.762 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.322 5.322 13 C -0.050 4.050 14 C 0.306 3.694 15 O -0.451 6.451 16 C -0.140 4.140 17 H 0.122 0.878 18 C -0.144 4.144 19 C -0.090 4.090 20 N -0.233 5.233 21 C -0.030 4.030 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.076 4.076 28 H 0.051 0.949 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.893 8.299 -11.626 15.861 hybrid contribution 0.470 -0.170 1.957 2.020 sum 7.364 8.130 -9.670 14.623 Atomic orbital electron populations 1.22097 0.98000 0.99911 1.00749 1.19070 0.91457 0.93428 0.80809 0.92685 1.21377 1.32005 1.13309 0.90232 0.92018 1.24878 0.94748 0.94950 0.98989 1.69849 1.36194 1.22604 1.23967 0.86502 0.78648 0.80086 0.82267 1.20568 1.21075 1.19840 1.48219 1.48742 1.11723 1.23472 1.21395 0.99139 0.83013 1.01451 1.20233 0.78361 0.87730 0.83046 1.90578 1.58674 1.69195 1.26652 1.22104 0.96526 0.93541 1.01806 0.87767 1.22409 0.96727 0.94230 1.01000 1.23227 0.93372 0.96136 0.96297 1.64826 1.07497 1.08129 1.42872 1.21802 0.91117 0.92724 0.97403 1.21556 0.97437 0.95542 1.00276 1.21522 0.95672 0.97781 1.00612 1.21539 0.97860 0.97339 0.98941 1.21518 0.97715 0.96717 0.99649 1.21588 0.94168 0.97712 1.01665 1.22808 0.95156 0.95460 0.94182 0.94898 0.88804 0.96864 0.92576 0.94203 0.92111 0.90846 0.90738 0.89831 0.93709 0.90123 0.94299 0.91117 0.92055 0.92231 0.92013 0.92343 0.91904 0.92235 0.91952 0.91832 0.91036 0.93952 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.97 37.16 0.33 -3.00 16 2 C 0.25 5.82 2.40 -69.08 -0.17 5.66 16 3 H 0.06 1.31 4.81 -51.93 -0.25 1.06 16 4 C -0.53 -13.42 8.03 -34.44 -0.28 -13.70 16 5 H 0.06 1.59 7.25 -52.49 -0.38 1.21 16 6 C 0.07 1.71 5.31 -17.82 -0.09 1.61 16 7 N -0.89 -23.13 11.33 55.43 0.63 -22.50 16 8 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.59 -12.76 2.75 -175.26 -0.48 -13.24 16 13 C 0.09 1.84 9.50 59.84 0.57 2.41 16 14 C 0.52 10.95 6.74 -10.98 -0.07 10.87 16 15 O -0.57 -13.13 14.99 5.55 0.08 -13.04 16 16 C -0.12 -2.14 2.38 -90.41 -0.22 -2.36 16 17 H 0.10 1.99 6.81 -51.93 -0.35 1.64 16 18 C -0.11 -1.71 6.20 -24.87 -0.15 -1.86 16 19 C 0.04 0.52 5.56 -1.90 -0.01 0.51 16 20 N -0.51 -7.47 5.11 -222.51 -1.14 -8.61 16 21 C 0.08 0.96 1.62 -67.72 -0.11 0.85 16 22 C -0.11 -1.16 5.14 -26.73 -0.14 -1.30 16 23 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 24 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 25 C -0.12 -1.10 5.92 -26.76 -0.16 -1.26 16 26 C -0.11 -1.31 5.08 -26.76 -0.14 -1.44 16 27 C 0.05 0.85 4.94 -2.75 -0.01 0.83 16 28 H 0.03 0.71 7.67 -51.92 -0.40 0.32 16 29 H 0.09 2.28 6.08 -51.93 -0.32 1.97 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.17 7.33 -51.92 -0.38 0.79 16 34 H 0.07 1.44 6.96 -51.93 -0.36 1.08 16 35 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 36 H 0.08 1.35 7.63 -51.93 -0.40 0.96 16 37 H 0.04 0.59 7.95 -51.93 -0.41 0.18 16 38 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 39 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.64 7.03 -51.93 -0.37 0.27 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.04 0.65 7.48 -51.93 -0.39 0.26 16 51 H 0.10 1.78 6.63 -51.93 -0.34 1.44 16 LS Contribution 378.57 15.07 5.71 5.71 Total: -1.00 -27.32 378.57 -10.48 -37.80 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -9.30 Total: 3.40 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.96 Total: -4.56 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.99 Total: -44.35 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.32 -10.48 -37.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343681663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.610 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds