Wall clock time and date at job start Tue Mar 31 2020 09:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47133 * 2 1 4 4 C 1.50706 * 109.46682 * 120.00358 * 2 1 3 5 5 H 1.07997 * 119.99755 * 120.00733 * 4 2 1 6 6 C 1.37879 * 119.99884 * 299.71963 * 4 2 1 7 7 N 1.31508 * 120.00102 * 0.28025 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.27868 * 6 4 2 9 9 H 1.48507 * 109.46778 * 90.00357 * 8 6 4 10 10 H 1.48498 * 109.47060 * 210.00007 * 8 6 4 11 11 H 1.48496 * 109.47140 * 330.00326 * 8 6 4 12 12 N 1.46499 * 109.46988 * 239.99615 * 2 1 3 13 13 C 1.46496 * 120.00531 * 300.00123 * 12 2 1 14 14 C 1.34782 * 119.99315 * 120.00293 * 12 2 1 15 15 O 1.21291 * 119.99652 * 184.26408 * 14 12 2 16 16 C 1.50696 * 120.00280 * 4.26145 * 14 12 2 17 17 H 1.08995 * 110.27192 * 38.80272 * 16 14 12 18 18 C 1.54600 * 110.31008 * 276.60738 * 16 14 12 19 19 C 1.54933 * 102.92094 * 219.12530 * 18 16 14 20 20 N 1.48536 * 103.22792 * 37.41313 * 19 18 16 21 21 C 1.46897 * 111.00052 * 200.27717 * 20 19 18 22 22 C 1.52997 * 109.47320 * 296.36786 * 21 20 19 23 23 C 1.53002 * 109.47403 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47274 * 59.99825 * 23 22 21 25 25 C 1.52997 * 109.47048 * 300.00392 * 24 23 22 26 26 C 1.52998 * 109.47301 * 176.36646 * 21 20 19 27 27 C 1.47903 * 105.81988 * 320.79141 * 20 19 18 28 28 H 1.09009 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47019 * 299.99752 * 1 2 3 30 30 H 1.08997 * 109.46968 * 60.00231 * 1 2 3 31 31 H 0.96996 * 120.00497 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47085 * 84.70398 * 13 12 2 33 33 H 1.09008 * 109.47116 * 204.70040 * 13 12 2 34 34 H 1.08997 * 109.47174 * 324.70073 * 13 12 2 35 35 H 1.08995 * 110.72387 * 337.48503 * 18 16 14 36 36 H 1.08999 * 110.72222 * 100.76735 * 18 16 14 37 37 H 1.08998 * 110.66605 * 278.97951 * 19 18 16 38 38 H 1.08997 * 110.66686 * 155.84655 * 19 18 16 39 39 H 1.09000 * 109.47306 * 56.36496 * 21 20 19 40 40 H 1.09000 * 109.47193 * 300.00257 * 22 21 20 41 41 H 1.09004 * 109.47370 * 59.99959 * 22 21 20 42 42 H 1.09000 * 109.47250 * 299.99726 * 23 22 21 43 43 H 1.08999 * 109.47219 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47204 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46673 * 60.00159 * 24 23 22 46 46 H 1.09000 * 109.47193 * 299.99448 * 25 24 23 47 47 H 1.09004 * 109.47370 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47389 * 300.00290 * 26 21 20 49 49 H 1.09007 * 109.46919 * 60.00393 * 26 21 20 50 50 H 1.08997 * 109.91905 * 265.97486 * 27 20 19 51 51 H 1.09004 * 110.07806 * 144.77376 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.7039 -0.2362 2.4828 7 7 0.9478 0.8331 2.6035 8 14 2.3329 -1.1123 4.0079 9 1 3.6424 -0.5356 4.4054 10 1 1.3590 -0.9389 5.1154 11 1 2.4973 -2.5589 3.7153 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1336 -0.5825 -3.1110 16 6 3.2367 1.3762 -1.7983 17 1 3.4784 1.4900 -0.7416 18 6 2.1338 2.3784 -2.2098 19 6 2.9414 3.5497 -2.8232 20 7 4.0465 2.8622 -3.5392 21 6 5.1694 3.7787 -3.7781 22 6 4.7163 4.9105 -4.7025 23 6 5.8860 5.8647 -4.9519 24 6 7.0371 5.0999 -5.6084 25 6 7.4902 3.9681 -4.6840 26 6 6.3209 3.0143 -4.4344 27 6 4.4549 1.7395 -2.6674 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7165 1.1667 3.4844 32 1 0.6914 -2.1465 -1.9164 33 1 2.4169 -2.5572 -2.0657 34 1 1.6217 -2.6196 -0.4745 35 1 1.4693 1.9372 -2.9526 36 1 1.5716 2.7126 -1.3378 37 1 3.3349 4.1975 -2.0399 38 1 2.3259 4.1177 -3.5207 39 1 5.5052 4.1971 -2.8293 40 1 4.3805 4.4922 -5.6514 41 1 3.8959 5.4551 -4.2350 42 1 6.2222 6.2831 -4.0032 43 1 5.5630 6.6712 -5.6101 44 1 7.8705 5.7795 -5.7856 45 1 6.7008 4.6815 -6.5571 46 1 7.8264 4.3864 -3.7353 47 1 8.3099 3.4229 -5.1519 48 1 6.6437 2.2080 -3.7758 49 1 5.9851 2.5960 -5.3833 50 1 5.2861 2.0458 -2.0323 51 1 4.7475 0.8822 -3.2737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343681663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:41 Heat of formation + Delta-G solvation = -65.346389 kcal Electronic energy + Delta-G solvation = -27121.033101 eV Core-core repulsion = 23632.601595 eV Total energy + Delta-G solvation = -3488.431507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46844 -40.06906 -37.91295 -37.28448 -34.55243 -33.38226 -31.87147 -31.01105 -30.13308 -29.35353 -27.62806 -27.27149 -24.01467 -23.64385 -23.21058 -21.98886 -21.66542 -20.63170 -19.55744 -18.50775 -18.34333 -17.44134 -16.77234 -16.49949 -16.16467 -15.71110 -15.66182 -15.16365 -14.93908 -14.85439 -14.59433 -14.45548 -14.05026 -13.86703 -13.61192 -13.50668 -13.20801 -13.09363 -12.91537 -12.78935 -12.73417 -12.65894 -12.59604 -12.41022 -12.27004 -12.16499 -12.15088 -12.00986 -11.94563 -11.72527 -11.41728 -11.21487 -11.10542 -10.84866 -10.65086 -10.48552 -9.37422 -9.34409 -8.15058 -6.29368 1.41858 1.45185 1.52950 1.72565 2.31116 2.47062 2.94503 3.13390 3.51673 3.61733 3.75671 3.85306 3.91684 4.12661 4.23731 4.28381 4.30904 4.36518 4.46304 4.50761 4.58928 4.60122 4.64445 4.64800 4.67065 4.71731 4.74257 4.88280 4.90915 4.94635 4.96336 4.98518 5.05784 5.08063 5.09326 5.16008 5.18582 5.29714 5.31572 5.35905 5.38858 5.40405 5.57097 5.57715 5.74398 5.91557 5.96707 6.18857 6.20947 6.65298 6.84281 7.30964 7.44920 8.87990 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003372 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.745561 B = 8302.911009 C = 8632.199776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.260 3.740 3 H 0.048 0.952 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.030 3.970 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.598 5.598 13 C 0.093 3.907 14 C 0.514 3.486 15 O -0.592 6.592 16 C -0.117 4.117 17 H 0.093 0.907 18 C -0.100 4.100 19 C 0.045 3.955 20 N -0.519 5.519 21 C 0.077 3.923 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.112 4.112 27 C 0.062 3.938 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 9.985 -11.015 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.158 3.842 3 H 0.066 0.934 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.545 5.545 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.327 5.327 13 C -0.050 4.050 14 C 0.303 3.697 15 O -0.475 6.475 16 C -0.138 4.138 17 H 0.111 0.889 18 C -0.139 4.139 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.031 4.031 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.066 4.066 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.457 9.612 -11.885 17.007 hybrid contribution 0.291 -0.612 2.010 2.121 sum 7.748 8.999 -9.875 15.445 Atomic orbital electron populations 1.21939 0.97460 0.99790 1.00492 1.18889 0.91718 0.92917 0.80634 0.93430 1.21558 1.32165 1.13249 0.91415 0.93019 1.25473 0.94919 0.95537 1.01168 1.69931 1.36663 1.23318 1.24541 0.85653 0.78128 0.79016 0.79417 1.20386 1.20670 1.19848 1.48281 1.48902 1.12397 1.23153 1.21450 0.99867 0.82199 1.01466 1.20706 0.77758 0.88676 0.82540 1.90560 1.59406 1.69977 1.27515 1.22097 0.98034 0.92290 1.01419 0.88930 1.22369 0.96232 0.94549 1.00741 1.23224 0.92935 0.95224 0.96824 1.64831 1.08656 1.08480 1.42405 1.21904 0.90504 0.92829 0.97860 1.21535 0.98388 0.95147 0.99345 1.21513 0.94939 0.97635 1.01146 1.21540 0.98331 0.97168 0.98480 1.21502 0.96896 0.96644 1.00193 1.21571 0.94904 0.97891 1.00652 1.22615 0.94562 0.95610 0.93838 0.94888 0.90597 0.95439 0.92437 0.92867 0.91991 0.91068 0.91797 0.89939 0.92680 0.88267 0.94346 0.91858 0.91655 0.91916 0.90622 0.90764 0.92073 0.91940 0.91206 0.93174 0.92137 0.93086 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.97 71.98 0.65 -5.50 16 2 C 0.26 11.98 2.40 44.25 0.11 12.09 16 3 H 0.05 2.28 4.81 -2.39 -0.01 2.27 16 4 C -0.55 -27.63 8.03 25.60 0.21 -27.42 16 5 H 0.05 2.67 7.25 -2.91 -0.02 2.65 16 6 C 0.03 1.51 5.31 84.66 0.45 1.96 16 7 N -0.91 -46.93 11.33 21.45 0.24 -46.69 16 8 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.60 -25.89 2.75 -826.78 -2.28 -28.16 16 13 C 0.09 3.66 9.50 127.77 1.21 4.87 16 14 C 0.51 21.94 6.74 87.66 0.59 22.53 16 15 O -0.59 -27.62 14.99 -3.06 -0.05 -27.67 16 16 C -0.12 -4.26 2.38 -10.66 -0.03 -4.29 16 17 H 0.09 3.60 6.81 -2.39 -0.02 3.58 16 18 C -0.10 -3.21 6.20 31.80 0.20 -3.02 16 19 C 0.05 1.19 5.56 86.65 0.48 1.67 16 20 N -0.52 -14.85 5.11 -857.88 -4.38 -19.24 16 21 C 0.08 1.79 1.62 44.91 0.07 1.87 16 22 C -0.11 -2.03 5.14 30.59 0.16 -1.88 16 23 C -0.11 -1.72 5.92 30.59 0.18 -1.53 16 24 C -0.12 -1.73 5.92 30.59 0.18 -1.54 16 25 C -0.11 -1.95 5.92 30.58 0.18 -1.77 16 26 C -0.11 -2.52 5.08 30.58 0.16 -2.36 16 27 C 0.06 2.04 4.94 86.45 0.43 2.47 16 28 H 0.03 1.42 7.67 -2.38 -0.02 1.40 16 29 H 0.08 3.68 6.08 -2.39 -0.01 3.67 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 2.39 7.33 -2.38 -0.02 2.38 16 34 H 0.07 2.80 6.96 -2.39 -0.02 2.78 16 35 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 36 H 0.08 2.64 7.63 -2.39 -0.02 2.62 16 37 H 0.05 1.35 7.95 -2.39 -0.02 1.33 16 38 H 0.10 2.27 7.68 -2.39 -0.02 2.25 16 39 H 0.04 0.91 8.00 -2.39 -0.02 0.89 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.19 7.03 -2.38 -0.02 1.18 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 48 H 0.05 1.23 6.99 -2.39 -0.02 1.22 16 49 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.05 1.56 7.48 -2.39 -0.02 1.54 16 51 H 0.07 2.82 6.63 -2.39 -0.02 2.81 16 Total: -1.00 -57.01 378.57 1.67 -55.35 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.88 Total: 25.43 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.22 Total: -1.85 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -6.41 Total: -94.09 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -57.01 1.67 -55.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343681663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.999 kcal (2) G-P(sol) polarization free energy of solvation -57.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds