Wall clock time and date at job start Tue Mar 31 2020 09:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 C 1.52997 * 109.47206 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47281 * 180.02562 * 4 3 2 6 6 N 1.30296 * 126.34370 * 90.02331 * 5 4 3 7 7 N 1.28531 * 110.05161 * 180.02562 * 6 5 4 8 8 C 1.31216 * 109.85989 * 0.02562 * 7 6 5 9 9 N 1.38584 * 126.47247 * 180.02562 * 8 7 6 10 10 C 1.46899 * 110.99679 * 236.01855 * 9 8 7 11 11 C 1.50698 * 109.47422 * 58.75511 * 10 9 8 12 12 H 1.08003 * 119.99898 * 4.84951 * 11 10 9 13 13 C 1.37881 * 120.00389 * 184.85670 * 11 10 9 14 14 N 1.31510 * 119.99670 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47325 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47207 * 119.99525 * 15 13 11 18 18 H 1.48498 * 109.47223 * 239.99334 * 15 13 11 19 19 C 1.46898 * 110.99789 * 359.96721 * 9 8 7 20 20 C 1.53001 * 109.46668 * 163.93760 * 19 9 8 21 21 C 1.53003 * 109.47073 * 178.18086 * 20 19 9 22 22 C 1.52998 * 109.47318 * 64.99919 * 21 20 19 23 23 C 1.52998 * 109.47375 * 185.00092 * 21 20 19 24 24 N 1.36454 * 107.05308 * 359.73528 * 8 7 6 25 25 C 1.46503 * 127.13847 * 180.26660 * 24 8 7 26 26 H 1.08995 * 109.47202 * 59.99917 * 1 2 3 27 27 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47417 * 299.99483 * 1 2 3 29 29 H 1.08999 * 109.47417 * 240.00517 * 2 1 3 30 30 H 1.08995 * 109.47202 * 120.00083 * 2 1 3 31 31 H 1.08997 * 109.47177 * 300.00821 * 3 2 1 32 32 H 1.08999 * 109.46661 * 60.00054 * 3 2 1 33 33 H 1.08996 * 109.47386 * 300.00783 * 4 3 2 34 34 H 1.08998 * 109.46630 * 60.00314 * 4 3 2 35 35 H 1.09000 * 109.47515 * 178.75435 * 10 9 8 36 36 H 1.09004 * 109.47346 * 298.75191 * 10 9 8 37 37 H 0.97003 * 119.99901 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47226 * 283.93670 * 19 9 8 39 39 H 1.09001 * 109.47409 * 43.94355 * 19 9 8 40 40 H 1.08996 * 109.47548 * 298.17547 * 20 19 9 41 41 H 1.09000 * 109.47199 * 58.18104 * 20 19 9 42 42 H 1.09004 * 109.46829 * 304.99928 * 21 20 19 43 43 H 1.09002 * 109.47168 * 299.99976 * 22 21 20 44 44 H 1.08998 * 109.47023 * 59.99788 * 22 21 20 45 45 H 1.08994 * 109.47164 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.47106 * 59.99915 * 23 21 20 47 47 H 1.09002 * 109.47301 * 179.97438 * 23 21 20 48 48 H 1.09004 * 109.47389 * 300.00108 * 23 21 20 49 49 H 1.09006 * 109.47134 * 270.20113 * 25 24 8 50 50 H 1.09005 * 109.46827 * 30.19771 * 25 24 8 51 51 H 1.08992 * 109.47198 * 150.20089 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0013 6 7 4.3296 3.5910 1.0511 7 7 4.7403 4.7545 0.6911 8 6 4.7667 4.8324 -0.6185 9 7 5.1542 5.9298 -1.3709 10 6 4.0900 6.3337 -2.2994 11 6 2.8434 6.6663 -1.5208 12 1 2.8638 6.6616 -0.4410 13 6 1.6766 6.9764 -2.1869 14 7 1.6518 6.9825 -3.5017 15 14 0.1312 7.3879 -1.2216 16 1 0.4207 7.3108 0.2329 17 1 -0.3162 8.7616 -1.5655 18 1 -0.9397 6.4181 -1.5648 19 6 5.5499 7.0485 -0.5049 20 6 6.3355 8.0744 -1.3242 21 6 6.7086 9.2609 -0.4332 22 6 7.6708 8.7943 0.6610 23 6 7.3842 10.3417 -1.2795 24 7 4.3467 3.6265 -1.0996 25 6 4.2144 3.2321 -2.5044 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.9330 0.9289 0.8907 34 1 3.9336 0.9287 -0.8891 35 1 4.4117 7.2103 -2.8618 36 1 3.8802 5.5164 -2.9894 37 1 0.8311 7.2010 -3.9703 38 1 4.6588 7.5199 -0.0905 39 1 6.1750 6.6762 0.3067 40 1 7.2431 7.6118 -1.7119 41 1 5.7218 8.4227 -2.1550 42 1 5.8075 9.6686 0.0250 43 1 7.1894 8.0243 1.2640 44 1 8.5718 8.3865 0.2028 45 1 7.9362 9.6395 1.2960 46 1 6.6986 10.6742 -2.0590 47 1 7.6496 11.1872 -0.6447 48 1 8.2853 9.9340 -1.7377 49 1 3.2127 3.4770 -2.8578 50 1 4.9517 3.7672 -3.1029 51 1 4.3803 2.1590 -2.5976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349715744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:33 Heat of formation + Delta-G solvation = 47.126955 kcal Electronic energy + Delta-G solvation = -26927.626001 eV Core-core repulsion = 23476.364456 eV Total energy + Delta-G solvation = -3451.261545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.227 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19077 -37.70025 -35.90852 -35.47068 -34.10191 -32.67253 -31.31838 -28.83055 -28.22770 -27.07802 -26.89284 -26.10937 -24.22480 -23.18496 -22.08854 -21.12613 -19.97501 -19.81669 -19.35638 -16.85501 -16.20976 -15.77950 -15.66901 -15.13638 -14.90317 -14.65033 -14.20613 -13.91503 -13.75215 -13.52957 -13.30422 -13.08132 -12.80733 -12.73585 -12.41421 -12.27053 -12.09954 -11.92425 -11.71749 -11.32555 -11.25454 -11.19497 -11.13746 -11.01515 -10.85449 -10.71562 -10.57618 -10.52738 -10.39059 -10.35476 -10.14898 -10.02769 -9.84559 -9.53776 -9.35299 -8.81013 -8.59745 -7.27428 -6.21888 -4.29333 2.54845 3.04984 3.18453 3.27366 3.35842 3.63741 4.30710 4.62116 4.70354 4.92975 5.03719 5.10190 5.12661 5.18494 5.22542 5.26655 5.27939 5.32923 5.55152 5.67375 5.70537 5.76499 5.80820 5.82294 5.83222 5.91882 5.93720 5.94471 5.97319 6.03835 6.07960 6.15437 6.18101 6.23004 6.26557 6.36330 6.42150 6.52103 6.54662 6.60500 6.67762 6.84917 6.93201 7.01826 7.21757 7.34295 7.63581 7.73371 7.99113 8.16584 8.78457 9.38468 9.58153 10.83956 Molecular weight = 308.23amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004772 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.346096 B = 5866.577085 C = 7382.578956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.019 4.019 5 C 0.149 3.851 6 N -0.289 5.289 7 N -0.349 5.349 8 C 0.417 3.583 9 N -0.465 5.465 10 C 0.182 3.818 11 C -0.548 4.548 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.283 1.283 19 C 0.075 3.925 20 C -0.107 4.107 21 C -0.095 4.095 22 C -0.148 4.148 23 C -0.144 4.144 24 N -0.477 5.477 25 C 0.085 3.915 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -7.451 1.395 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.059 4.059 5 C -0.119 4.119 6 N -0.128 5.128 7 N -0.194 5.194 8 C 0.060 3.940 9 N -0.188 5.188 10 C 0.058 3.942 11 C -0.587 4.587 12 H 0.081 0.919 13 C -0.132 4.132 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.052 4.052 20 C -0.145 4.145 21 C -0.114 4.114 22 C -0.205 4.205 23 C -0.201 4.201 24 N -0.172 5.172 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.975 -7.116 2.356 9.586 hybrid contribution -1.817 0.215 -0.771 1.985 sum 4.158 -6.901 1.585 8.211 Atomic orbital electron populations 1.21772 0.95909 1.01268 1.02142 1.21505 0.95930 0.96546 1.01856 1.21620 0.93822 0.96823 1.03320 1.19854 0.95678 0.87002 1.03387 1.24299 1.07276 0.97531 0.82799 1.73757 1.15365 0.99320 1.24369 1.74521 1.25041 1.12637 1.07171 1.22584 0.95367 0.86714 0.89313 1.59250 1.38237 1.03865 1.17406 1.20125 0.85934 0.97516 0.90600 1.21718 0.95194 1.48202 0.93604 0.91931 1.24868 0.98797 0.94791 0.94780 1.69927 1.27982 1.48327 1.06535 0.86580 0.83022 0.78183 0.80715 1.19542 1.20669 1.20885 1.21968 0.99541 0.89579 0.94082 1.21602 0.99853 0.94588 0.98459 1.21060 0.98659 0.95614 0.96064 1.21889 0.99225 1.00922 0.98457 1.21811 1.00447 0.98113 0.99726 1.45740 1.51946 1.11401 1.08120 1.21981 1.04546 1.00667 0.78668 0.92673 0.92954 0.92665 0.92095 0.91892 0.91705 0.91141 0.89094 0.90768 0.93427 0.94101 0.92686 0.92043 0.90811 0.92164 0.91174 0.91109 0.92119 0.93033 0.93376 0.92680 0.93212 0.93002 0.89881 0.89249 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.12 -1.54 5.20 -26.73 -0.14 -1.68 16 4 C -0.02 -0.26 5.59 -27.88 -0.16 -0.41 16 5 C 0.15 2.78 7.32 -154.02 -1.13 1.66 16 6 N -0.29 -6.36 12.18 32.99 0.40 -5.95 16 7 N -0.35 -8.18 11.02 30.32 0.33 -7.85 16 8 C 0.42 9.23 6.03 -318.87 -1.92 7.31 16 9 N -0.46 -9.96 4.73 -175.88 -0.83 -10.80 16 10 C 0.18 4.33 4.82 -4.98 -0.02 4.31 16 11 C -0.55 -14.62 7.61 -34.44 -0.26 -14.88 16 12 H 0.06 1.80 6.61 -52.48 -0.35 1.45 16 13 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 14 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.08 1.50 4.11 -3.82 -0.02 1.49 16 20 C -0.11 -1.80 4.77 -26.73 -0.13 -1.92 16 21 C -0.09 -1.36 2.92 -90.62 -0.26 -1.63 16 22 C -0.15 -1.94 8.95 37.16 0.33 -1.61 16 23 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 24 N -0.48 -9.26 3.21 -121.46 -0.39 -9.65 16 25 C 0.08 1.33 9.35 59.85 0.56 1.89 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.81 7.26 -51.93 -0.38 0.44 16 35 H 0.05 1.18 6.50 -51.93 -0.34 0.84 16 36 H 0.04 0.99 5.48 -51.93 -0.28 0.71 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.06 1.38 6.46 -51.93 -0.34 1.05 16 39 H 0.07 1.46 6.01 -51.93 -0.31 1.14 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.28 6.61 -51.93 -0.34 0.94 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.87 6.61 -51.93 -0.34 0.52 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 50 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 51 H 0.08 0.89 7.25 -51.93 -0.38 0.52 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -30.66 397.11 -10.81 -41.47 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.34 Total: 1.75 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.69 Total: -7.67 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.25 Total: -58.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.66 -10.81 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349715744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.601 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds