Wall clock time and date at job start Tue Mar 31 2020 09:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47301 * 2 1 4 4 C 1.46499 * 119.99793 * 269.99732 * 3 2 1 5 5 C 1.50697 * 109.47061 * 270.00025 * 4 3 2 6 6 H 1.08002 * 120.00069 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00031 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99625 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00044 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47291 * 59.99613 * 9 7 5 11 11 H 1.48502 * 109.46852 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46895 * 299.99248 * 9 7 5 13 13 C 1.34774 * 119.99715 * 89.99622 * 3 2 1 14 14 O 1.21289 * 119.99380 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00287 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47198 * 175.35294 * 15 13 3 17 17 C 1.46814 * 110.99987 * 294.70696 * 16 15 13 18 18 C 1.53024 * 109.76835 * 172.44650 * 17 16 15 19 19 C 1.53285 * 109.19081 * 60.94980 * 18 17 16 20 20 H 1.09002 * 109.56834 * 64.29080 * 19 18 17 21 21 C 1.52996 * 109.56900 * 184.53385 * 19 18 17 22 22 C 1.52812 * 108.97876 * 304.41238 * 19 18 17 23 23 C 1.53384 * 113.51407 * 283.02555 * 22 19 18 24 24 C 1.53852 * 86.95683 * 220.11580 * 23 22 19 25 25 C 1.53347 * 113.56948 * 185.10071 * 22 19 18 26 26 C 1.47008 * 111.00215 * 170.52941 * 16 15 13 27 27 H 1.08996 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47227 * 300.00724 * 1 2 3 29 29 H 1.09009 * 109.46714 * 60.00288 * 1 2 3 30 30 H 1.08996 * 109.46885 * 239.99649 * 2 1 3 31 31 H 1.09005 * 109.46647 * 120.00206 * 2 1 3 32 32 H 1.09005 * 109.47299 * 30.00133 * 4 3 2 33 33 H 1.09000 * 109.46915 * 149.99588 * 4 3 2 34 34 H 0.97004 * 119.99612 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47580 * 55.35356 * 15 13 3 36 36 H 1.09006 * 109.47241 * 295.34883 * 15 13 3 37 37 H 1.09004 * 109.41571 * 52.35979 * 17 16 15 38 38 H 1.08991 * 109.37433 * 292.50958 * 17 16 15 39 39 H 1.08998 * 109.52150 * 301.02685 * 18 17 16 40 40 H 1.09007 * 109.51674 * 180.85710 * 18 17 16 41 41 H 1.08999 * 109.47159 * 53.87167 * 21 19 18 42 42 H 1.09002 * 109.47471 * 173.87377 * 21 19 18 43 43 H 1.09005 * 109.47008 * 293.87643 * 21 19 18 44 44 H 1.09003 * 113.63413 * 334.63414 * 23 22 19 45 45 H 1.09007 * 113.63545 * 105.60165 * 23 22 19 46 46 H 1.08996 * 113.60348 * 270.55770 * 24 23 22 47 47 H 1.09003 * 113.67373 * 139.70530 * 24 23 22 48 48 H 1.09005 * 113.63258 * 254.34460 * 25 22 19 49 49 H 1.08998 * 113.63652 * 25.22089 * 25 22 19 50 50 H 1.09005 * 109.50113 * 303.42541 * 26 16 15 51 51 H 1.09000 * 109.50083 * 63.50519 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2300 -1.0961 7 6 4.1496 2.3903 -2.8774 8 7 3.3496 3.1263 -3.6176 9 14 5.9136 2.0961 -3.4169 10 1 6.1403 0.6394 -3.5952 11 1 6.1611 2.7961 -4.7030 12 1 6.8415 2.6185 -2.3818 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9923 1.3060 2.4722 16 7 2.4148 2.1649 3.5865 17 6 3.8666 2.3819 3.5624 18 6 4.2517 3.4246 4.6141 19 6 3.8550 2.9101 6.0025 20 1 4.4325 2.0164 6.2394 21 6 4.1324 3.9917 7.0484 22 6 2.3650 2.5708 5.9998 23 6 1.4566 3.8037 6.0859 24 6 0.5703 2.9825 7.0384 25 6 1.8269 2.1615 7.3762 26 6 1.9828 1.6060 4.8758 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1409 -1.1384 34 1 3.6757 3.5168 -4.4435 35 1 2.5604 0.3760 2.4947 36 1 0.9291 1.0846 2.5671 37 1 4.1637 2.7360 2.5752 38 1 4.3761 1.4431 3.7792 39 1 3.7293 4.3589 4.4090 40 1 5.3281 3.5936 4.5823 41 1 3.6375 4.9172 6.7540 42 1 3.7506 3.6676 8.0165 43 1 5.2069 4.1611 7.1197 44 1 1.9299 4.6629 6.5612 45 1 0.9698 4.0546 5.1434 46 1 -0.2027 2.4077 6.5284 47 1 0.1843 3.5563 7.8810 48 1 1.6376 1.0922 7.4710 49 1 2.4035 2.5649 8.2085 50 1 0.9017 1.4670 4.8682 51 1 2.4722 0.6457 5.0383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367479280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:32 Heat of formation + Delta-G solvation = -15.117301 kcal Electronic energy + Delta-G solvation = -27221.893648 eV Core-core repulsion = 23735.640238 eV Total energy + Delta-G solvation = -3486.253410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74288 -39.03960 -36.42200 -35.08679 -33.88242 -32.75701 -30.07577 -29.46213 -28.89997 -27.12074 -25.79836 -25.24042 -23.45549 -23.00682 -22.54032 -21.51880 -20.50282 -18.31730 -17.74620 -16.56117 -16.33787 -15.98920 -15.63042 -15.32236 -14.92471 -14.59015 -14.25276 -14.21984 -14.03932 -13.49921 -13.29406 -13.28748 -12.86546 -12.64619 -12.47079 -12.35058 -11.96802 -11.92159 -11.77497 -11.64785 -11.42628 -11.27984 -11.21170 -11.09915 -10.89923 -10.86780 -10.69848 -10.58183 -10.49615 -10.16625 -10.09714 -9.90779 -9.73934 -9.60636 -8.77844 -8.40818 -8.02160 -7.58904 -6.01682 -4.06367 3.32661 3.37215 3.39212 3.52172 3.68144 4.22545 4.46601 4.50719 4.56556 4.61207 4.81413 4.96903 5.03937 5.13159 5.19566 5.29646 5.32479 5.38322 5.45213 5.48977 5.51695 5.55440 5.60015 5.65580 5.68642 5.69232 5.72057 5.77513 5.81608 5.84894 5.90786 6.00361 6.05049 6.07088 6.17890 6.24622 6.25909 6.32027 6.39607 6.50211 6.51115 6.55849 7.04604 7.24167 7.31107 7.50255 7.61382 7.95410 8.27218 8.50398 8.93940 9.20217 9.58774 11.06245 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.003642 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.811425 B = 7686.767195 C = 8666.352969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.514 5.514 17 C 0.052 3.948 18 C -0.105 4.105 19 C -0.078 4.078 20 H 0.063 0.937 21 C -0.148 4.148 22 C -0.068 4.068 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.135 4.135 26 C 0.082 3.918 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -5.262 20.687 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.093 4.093 16 N -0.238 5.238 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.097 4.097 20 H 0.081 0.919 21 C -0.205 4.205 22 C -0.069 4.069 23 C -0.165 4.165 24 C -0.180 4.180 25 C -0.173 4.173 26 C -0.046 4.046 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.092 0.908 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.456 -4.076 20.415 21.290 hybrid contribution 1.317 -1.157 -0.374 1.792 sum -3.139 -5.233 20.042 20.950 Atomic orbital electron populations 1.22221 0.96850 1.01288 1.02349 1.21397 0.93482 0.84426 1.02467 1.48267 1.64226 1.13131 1.07726 1.19222 0.96060 0.93647 0.78128 1.21400 0.96992 1.31819 1.06235 0.92664 1.24927 0.97748 0.94960 0.96419 1.69925 1.35677 1.33423 1.14348 0.86584 0.84941 0.78196 0.77838 1.20317 1.21181 1.20206 1.20120 0.78899 0.87118 0.84680 1.90652 1.44664 1.17669 1.86789 1.22049 1.01740 0.94520 0.91018 1.61521 1.14793 1.46783 1.00751 1.22208 0.86406 0.97147 1.01763 1.21585 1.00267 0.99561 0.92877 1.21032 0.94948 0.98166 0.95552 0.91851 1.21961 1.01068 0.99041 0.98468 1.21547 0.94611 0.96791 0.93911 1.22945 0.96968 0.96476 1.00075 1.22847 0.96552 0.99026 0.99562 1.23009 0.97506 0.99820 0.96939 1.21858 1.00025 0.94539 0.88215 0.92290 0.93086 0.92022 0.90063 0.92015 0.95182 0.93918 0.92701 0.92909 0.88736 0.88442 0.96029 0.90729 0.91922 0.92142 0.92642 0.92982 0.89964 0.90569 0.90494 0.91978 0.91944 0.89753 0.90778 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.71 5.96 -4.04 -0.02 1.69 16 3 N -0.60 -12.69 2.46 -175.06 -0.43 -13.12 16 4 C 0.25 6.53 5.16 -5.20 -0.03 6.50 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.58 7.22 -10.99 -0.08 10.50 16 14 O -0.52 -13.16 14.12 5.55 0.08 -13.08 16 15 C 0.04 0.59 4.13 -4.98 -0.02 0.57 16 16 N -0.51 -7.81 4.39 -236.05 -1.04 -8.85 16 17 C 0.05 0.82 5.05 -3.86 -0.02 0.81 16 18 C -0.11 -1.41 5.32 -26.57 -0.14 -1.55 16 19 C -0.08 -0.86 2.46 -90.57 -0.22 -1.08 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.15 -1.37 8.28 37.16 0.31 -1.06 16 22 C -0.07 -0.73 0.77 -154.24 -0.12 -0.85 16 23 C -0.13 -1.37 6.84 -26.09 -0.18 -1.55 16 24 C -0.14 -1.27 7.74 -25.84 -0.20 -1.47 16 25 C -0.14 -1.18 7.05 -26.11 -0.18 -1.37 16 26 C 0.08 0.97 4.54 -3.77 -0.02 0.96 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.83 6.31 -51.93 -0.33 0.50 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 36 H 0.09 1.27 7.25 -51.93 -0.38 0.90 16 37 H 0.10 1.92 5.88 -51.93 -0.31 1.62 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.58 6.38 -51.93 -0.33 0.24 16 42 H 0.05 0.45 6.02 -51.93 -0.31 0.14 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.84 5.70 -51.93 -0.30 0.54 16 45 H 0.08 0.98 8.09 -51.92 -0.42 0.56 16 46 H 0.08 0.68 7.64 -51.93 -0.40 0.29 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 49 H 0.08 0.68 6.02 -51.93 -0.31 0.37 16 50 H 0.07 0.83 7.28 -51.93 -0.38 0.45 16 51 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -31.98 382.81 -10.07 -42.05 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -9.20 Total: -0.27 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.97 Total: -3.41 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.73 Total: -48.00 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.98 -10.07 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367479280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.929 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds