Wall clock time and date at job start Tue Mar 31 2020 09:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47521 * 2 1 4 4 C 1.46506 * 119.99748 * 270.00049 * 3 2 1 5 5 C 1.50695 * 109.47206 * 269.99439 * 4 3 2 6 6 H 1.08003 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.46975 * 59.99869 * 9 7 5 11 11 H 1.48498 * 109.47031 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46910 * 300.00074 * 9 7 5 13 13 C 1.34774 * 119.99928 * 89.99444 * 3 2 1 14 14 O 1.21285 * 119.99577 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00262 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47229 * 173.87878 * 15 13 3 17 17 C 1.46849 * 111.00153 * 169.46834 * 16 15 13 18 18 C 1.53037 * 109.60336 * 186.12685 * 17 16 15 19 19 C 1.53186 * 109.22879 * 300.49405 * 18 17 16 20 20 C 1.52774 * 109.16629 * 57.06629 * 19 18 17 21 21 C 1.53977 * 109.75539 * 64.31725 * 20 19 18 22 22 C 1.54952 * 104.11957 * 95.85831 * 21 20 19 23 23 C 1.54916 * 102.78634 * 37.69091 * 22 21 20 24 24 C 1.53564 * 110.01357 * 181.68504 * 20 19 18 25 25 C 1.46917 * 111.00143 * 293.64523 * 16 15 13 26 26 H 1.09000 * 109.47155 * 300.00459 * 1 2 3 27 27 H 1.08997 * 109.47445 * 60.00073 * 1 2 3 28 28 H 1.09003 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 239.99541 * 2 1 3 30 30 H 1.09006 * 109.47304 * 119.99818 * 2 1 3 31 31 H 1.08998 * 109.47068 * 29.99752 * 4 3 2 32 32 H 1.09005 * 109.46784 * 149.99640 * 4 3 2 33 33 H 0.96998 * 119.99920 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47149 * 53.88431 * 15 13 3 35 35 H 1.08997 * 109.47063 * 293.87623 * 15 13 3 36 36 H 1.09002 * 109.44931 * 306.17225 * 17 16 15 37 37 H 1.09001 * 109.44492 * 66.08985 * 17 16 15 38 38 H 1.09000 * 109.51502 * 180.56622 * 18 17 16 39 39 H 1.09004 * 109.55214 * 60.43870 * 18 17 16 40 40 H 1.09002 * 109.51844 * 297.16413 * 19 18 17 41 41 H 1.08993 * 109.52508 * 176.97393 * 19 18 17 42 42 H 1.09008 * 110.50019 * 214.51440 * 21 20 19 43 43 H 1.09001 * 110.50579 * 337.19389 * 21 20 19 44 44 H 1.09004 * 110.74813 * 279.36996 * 22 21 20 45 45 H 1.09006 * 110.75218 * 156.01657 * 22 21 20 46 46 H 1.09001 * 110.48337 * 203.54703 * 23 22 21 47 47 H 1.09000 * 110.59518 * 80.96514 * 23 22 21 48 48 H 1.09005 * 110.05433 * 0.06657 * 24 20 19 49 49 H 1.09003 * 110.05030 * 121.50334 * 24 20 19 50 50 H 1.09004 * 109.45489 * 294.84994 * 25 16 15 51 51 H 1.09002 * 109.46347 * 54.80412 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8780 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4176 10 1 6.1403 0.6386 -3.5947 11 1 6.1607 2.7955 -4.7036 12 1 6.8410 2.6188 -2.3830 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.4472 2.1505 3.5849 17 6 1.9975 1.6099 4.8740 18 6 2.3552 2.5891 5.9944 19 6 3.8726 2.7979 6.0165 20 6 4.3301 3.2978 4.6472 21 6 3.7173 4.6823 4.3672 22 6 4.8231 5.6791 4.7969 23 6 6.1220 4.9661 4.3446 24 6 5.8556 3.4738 4.6348 25 6 3.9069 2.3146 3.5585 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 3.6752 3.5159 -4.4441 34 1 2.5397 0.3637 2.4840 35 1 0.9257 1.1080 2.5791 36 1 0.9174 1.4648 4.8499 37 1 2.4877 0.6538 5.0574 38 1 2.0298 2.1819 6.9516 39 1 1.8591 3.5433 5.8171 40 1 4.3670 1.8533 6.2432 41 1 4.1278 3.5354 6.7773 42 1 3.4945 4.7936 3.3059 43 1 2.8175 4.8295 4.9645 44 1 4.8167 5.8206 5.8777 45 1 4.7059 6.6320 4.2809 46 1 6.9738 5.3214 4.9244 47 1 6.2945 5.1228 3.2798 48 1 6.2712 3.2017 5.6051 49 1 6.2968 2.8556 3.8528 50 1 4.3839 1.3504 3.7346 51 1 4.2118 2.6978 2.5847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000445868708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:53 Heat of formation + Delta-G solvation = -48.586889 kcal Electronic energy + Delta-G solvation = -27529.455531 eV Core-core repulsion = 24041.750771 eV Total energy + Delta-G solvation = -3487.704760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19985 -38.78038 -36.30620 -35.13771 -32.97253 -32.55535 -30.28338 -30.04729 -28.47890 -28.24142 -26.28266 -24.45238 -23.54889 -22.94874 -22.13368 -21.24248 -20.13171 -18.21828 -18.07690 -16.55327 -16.30046 -15.90483 -15.65888 -15.29026 -15.05798 -14.39942 -14.26523 -14.08589 -13.71636 -13.39901 -13.34152 -13.18130 -12.99356 -12.67138 -12.51956 -12.37559 -11.94096 -11.78377 -11.51639 -11.47995 -11.19930 -11.15083 -10.97062 -10.89848 -10.89009 -10.67128 -10.56400 -10.49326 -10.36993 -10.27340 -10.11448 -10.07073 -9.95042 -9.60491 -8.77171 -8.40548 -8.00400 -7.58057 -6.01399 -4.05976 3.32588 3.37266 3.39275 3.53521 3.72960 4.25096 4.47158 4.67969 4.76273 4.77282 5.04805 5.06895 5.16788 5.24435 5.29713 5.33153 5.44451 5.45425 5.51606 5.57168 5.59006 5.63989 5.67619 5.69586 5.75560 5.84796 5.86127 5.91703 5.92731 5.98922 6.03179 6.06630 6.11194 6.16477 6.25788 6.26504 6.31054 6.36702 6.50751 6.54209 6.66167 6.83615 7.05145 7.24747 7.32123 7.50632 7.62125 7.95755 8.27628 8.51413 8.94371 9.21531 9.59190 11.06516 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.004729 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.102177 B = 5919.697436 C = 7502.702242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.520 6.520 15 C 0.037 3.963 16 N -0.515 5.515 17 C 0.057 3.943 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.054 4.054 21 C -0.102 4.102 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.115 4.115 25 C 0.066 3.934 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.021 0.979 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -4.151 18.609 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.130 3.870 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.094 4.094 16 N -0.240 5.240 17 C -0.071 4.071 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.054 4.054 21 C -0.139 4.139 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.153 4.153 25 C -0.061 4.061 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.039 0.961 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.959 -2.968 18.349 18.691 hybrid contribution 1.291 -1.210 -0.361 1.806 sum -0.668 -4.178 17.988 18.479 Atomic orbital electron populations 1.22216 0.96864 1.01269 1.02337 1.21393 0.93470 0.84468 1.02440 1.48268 1.64279 1.13110 1.07739 1.19218 0.96042 0.93645 0.78141 1.21387 0.96982 1.31797 1.06160 0.92710 1.24917 0.97689 0.94980 0.96420 1.69922 1.35658 1.33447 1.14354 0.86598 0.85011 0.78194 0.77846 1.20326 1.21180 1.20226 1.20127 0.78927 0.87150 0.84654 1.90646 1.44573 1.17610 1.86784 1.22064 1.01586 0.94611 0.91120 1.61539 1.12985 1.48476 1.00966 1.22076 0.99953 0.95664 0.89418 1.21639 0.96426 1.00375 0.97011 1.21634 0.95629 1.00393 0.96735 1.20909 0.94290 0.96239 0.93999 1.22359 0.96691 0.91838 1.03041 1.22543 0.95473 0.98579 0.99886 1.22345 0.97387 0.94944 1.01406 1.22173 0.95012 0.96950 1.01154 1.22309 0.86268 0.96717 1.00818 0.93098 0.92028 0.92315 0.90097 0.92034 0.95221 0.93910 0.92716 0.92995 0.88729 0.91059 0.95418 0.91950 0.90667 0.92688 0.91979 0.89807 0.91823 0.92372 0.91959 0.92381 0.91404 0.92122 0.91818 0.96124 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.11 1.71 5.95 -4.05 -0.02 1.69 16 3 N -0.60 -12.64 2.46 -175.06 -0.43 -13.07 16 4 C 0.25 6.50 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.48 7.22 -10.99 -0.08 10.40 16 14 O -0.52 -12.91 14.27 5.55 0.08 -12.83 16 15 C 0.04 0.58 4.18 -4.98 -0.02 0.56 16 16 N -0.52 -7.76 4.04 -236.28 -0.95 -8.71 16 17 C 0.06 0.66 5.45 -3.83 -0.02 0.64 16 18 C -0.12 -1.23 5.86 -26.62 -0.16 -1.38 16 19 C -0.11 -1.16 4.51 -26.75 -0.12 -1.28 16 20 C -0.05 -0.71 0.63 -153.99 -0.10 -0.81 16 21 C -0.10 -1.44 5.41 -25.19 -0.14 -1.58 16 22 C -0.13 -1.56 6.91 -24.69 -0.17 -1.73 16 23 C -0.12 -1.53 6.84 -25.02 -0.17 -1.70 16 24 C -0.11 -1.43 6.11 -25.73 -0.16 -1.59 16 25 C 0.07 1.04 3.45 -3.98 -0.01 1.02 16 26 H 0.05 0.65 7.41 -51.93 -0.38 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.06 0.83 6.27 -51.93 -0.33 0.51 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.05 0.74 7.05 -51.93 -0.37 0.38 16 35 H 0.09 1.27 7.24 -51.93 -0.38 0.89 16 36 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.85 6.38 -51.93 -0.33 0.52 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.50 7.81 -51.92 -0.41 1.10 16 43 H 0.06 0.86 6.01 -51.93 -0.31 0.55 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 49 H 0.06 0.85 7.67 -51.93 -0.40 0.45 16 50 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.10 1.91 6.02 -51.93 -0.31 1.60 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -31.65 384.43 -10.48 -42.13 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -9.44 Total: 0.39 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.23 Total: -4.67 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.65 Total: -47.74 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.65 -10.48 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445868708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.459 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds