Wall clock time and date at job start Tue Mar 31 2020 09:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47521 * 2 1 4 4 C 1.46506 * 119.99748 * 270.00049 * 3 2 1 5 5 C 1.50695 * 109.47206 * 269.99439 * 4 3 2 6 6 H 1.08003 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00229 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.46975 * 59.99869 * 9 7 5 11 11 H 1.48498 * 109.47031 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46910 * 300.00074 * 9 7 5 13 13 C 1.34774 * 119.99928 * 89.99444 * 3 2 1 14 14 O 1.21285 * 119.99577 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00262 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47229 * 173.87878 * 15 13 3 17 17 C 1.46849 * 111.00153 * 169.46834 * 16 15 13 18 18 C 1.53037 * 109.60336 * 186.12685 * 17 16 15 19 19 C 1.53186 * 109.22879 * 300.49405 * 18 17 16 20 20 C 1.52774 * 109.16629 * 57.06629 * 19 18 17 21 21 C 1.53977 * 109.75539 * 64.31725 * 20 19 18 22 22 C 1.54952 * 104.11957 * 95.85831 * 21 20 19 23 23 C 1.54916 * 102.78634 * 37.69091 * 22 21 20 24 24 C 1.53564 * 110.01357 * 181.68504 * 20 19 18 25 25 C 1.46917 * 111.00143 * 293.64523 * 16 15 13 26 26 H 1.09000 * 109.47155 * 300.00459 * 1 2 3 27 27 H 1.08997 * 109.47445 * 60.00073 * 1 2 3 28 28 H 1.09003 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47155 * 239.99541 * 2 1 3 30 30 H 1.09006 * 109.47304 * 119.99818 * 2 1 3 31 31 H 1.08998 * 109.47068 * 29.99752 * 4 3 2 32 32 H 1.09005 * 109.46784 * 149.99640 * 4 3 2 33 33 H 0.96998 * 119.99920 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47149 * 53.88431 * 15 13 3 35 35 H 1.08997 * 109.47063 * 293.87623 * 15 13 3 36 36 H 1.09002 * 109.44931 * 306.17225 * 17 16 15 37 37 H 1.09001 * 109.44492 * 66.08985 * 17 16 15 38 38 H 1.09000 * 109.51502 * 180.56622 * 18 17 16 39 39 H 1.09004 * 109.55214 * 60.43870 * 18 17 16 40 40 H 1.09002 * 109.51844 * 297.16413 * 19 18 17 41 41 H 1.08993 * 109.52508 * 176.97393 * 19 18 17 42 42 H 1.09008 * 110.50019 * 214.51440 * 21 20 19 43 43 H 1.09001 * 110.50579 * 337.19389 * 21 20 19 44 44 H 1.09004 * 110.74813 * 279.36996 * 22 21 20 45 45 H 1.09006 * 110.75218 * 156.01657 * 22 21 20 46 46 H 1.09001 * 110.48337 * 203.54703 * 23 22 21 47 47 H 1.09000 * 110.59518 * 80.96514 * 23 22 21 48 48 H 1.09005 * 110.05433 * 0.06657 * 24 20 19 49 49 H 1.09003 * 110.05030 * 121.50334 * 24 20 19 50 50 H 1.09004 * 109.45489 * 294.84994 * 25 16 15 51 51 H 1.09002 * 109.46347 * 54.80412 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1491 2.3895 -2.8780 8 7 3.3491 3.1255 -3.6182 9 14 5.9132 2.0954 -3.4176 10 1 6.1403 0.6386 -3.5947 11 1 6.1607 2.7955 -4.7036 12 1 6.8410 2.6188 -2.3830 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.4472 2.1505 3.5849 17 6 1.9975 1.6099 4.8740 18 6 2.3552 2.5891 5.9944 19 6 3.8726 2.7979 6.0165 20 6 4.3301 3.2978 4.6472 21 6 3.7173 4.6823 4.3672 22 6 4.8231 5.6791 4.7969 23 6 6.1220 4.9661 4.3446 24 6 5.8556 3.4738 4.6348 25 6 3.9069 2.3146 3.5585 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 3.6752 3.5159 -4.4441 34 1 2.5397 0.3637 2.4840 35 1 0.9257 1.1080 2.5791 36 1 0.9174 1.4648 4.8499 37 1 2.4877 0.6538 5.0574 38 1 2.0298 2.1819 6.9516 39 1 1.8591 3.5433 5.8171 40 1 4.3670 1.8533 6.2432 41 1 4.1278 3.5354 6.7773 42 1 3.4945 4.7936 3.3059 43 1 2.8175 4.8295 4.9645 44 1 4.8167 5.8206 5.8777 45 1 4.7059 6.6320 4.2809 46 1 6.9738 5.3214 4.9244 47 1 6.2945 5.1228 3.2798 48 1 6.2712 3.2017 5.6051 49 1 6.2968 2.8556 3.8528 50 1 4.3839 1.3504 3.7346 51 1 4.2118 2.6978 2.5847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000445868708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:52 Heat of formation + Delta-G solvation = -67.529424 kcal Electronic energy + Delta-G solvation = -27530.276941 eV Core-core repulsion = 24041.750771 eV Total energy + Delta-G solvation = -3488.526170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37908 -40.27338 -37.46989 -36.77803 -34.93539 -33.76983 -31.60242 -31.30944 -29.82797 -29.53649 -27.95194 -25.47626 -25.14576 -24.32957 -23.57938 -22.31440 -21.14336 -19.81019 -19.12280 -18.60929 -17.91952 -17.31346 -16.81348 -16.72997 -16.24999 -16.09836 -15.71875 -15.24659 -14.90759 -14.67555 -14.55513 -14.39175 -14.31714 -14.06851 -13.74858 -13.57261 -13.36708 -13.29418 -13.14894 -12.86858 -12.66345 -12.55928 -12.49866 -12.19998 -12.12095 -12.03994 -11.95631 -11.81751 -11.72031 -11.56969 -11.41486 -11.27524 -11.09728 -10.99324 -10.65390 -10.39788 -9.38244 -9.15249 -8.22828 -6.37812 1.33188 1.37706 1.44930 1.91829 2.25830 2.40578 3.00684 3.06151 3.67514 3.68240 3.74619 3.84535 4.06225 4.11236 4.18934 4.25523 4.36064 4.36633 4.39370 4.46674 4.50391 4.64681 4.64927 4.69200 4.71374 4.79201 4.85728 4.88010 4.93369 4.97183 4.99751 5.03718 5.05650 5.08694 5.11004 5.14935 5.22604 5.29003 5.29921 5.34212 5.39058 5.52243 5.57676 5.62494 5.68960 5.88246 6.04753 6.07802 6.26519 6.70426 6.87327 7.28808 7.59311 8.83793 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.004729 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.102177 B = 5919.697436 C = 7502.702242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.494 3.506 14 O -0.574 6.574 15 C 0.052 3.948 16 N -0.535 5.535 17 C 0.055 3.945 18 C -0.115 4.115 19 C -0.100 4.100 20 C -0.053 4.053 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.114 4.114 25 C 0.073 3.927 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.019 0.981 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.039 0.961 48 H 0.087 0.913 49 H 0.045 0.955 50 H 0.026 0.974 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -6.397 21.802 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.145 3.855 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.283 3.717 14 O -0.453 6.453 15 C -0.079 4.079 16 N -0.259 5.259 17 C -0.072 4.072 18 C -0.152 4.152 19 C -0.138 4.138 20 C -0.053 4.053 21 C -0.136 4.136 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.152 4.152 25 C -0.055 4.055 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.037 0.963 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.058 0.942 48 H 0.106 0.894 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.708 -5.265 21.562 22.261 hybrid contribution 1.154 -0.481 -1.382 1.863 sum -0.554 -5.746 20.180 20.989 Atomic orbital electron populations 1.22139 0.94494 1.03443 1.01664 1.21716 0.95384 0.81515 1.03583 1.48302 1.64500 1.15008 1.06204 1.18618 0.95069 0.91352 0.80489 1.21649 0.97897 1.31913 1.06416 0.93209 1.25837 1.02266 0.94499 0.96436 1.70048 1.37768 1.34197 1.14794 0.85518 0.79153 0.79071 0.77379 1.18373 1.20182 1.20546 1.21205 0.77489 0.86810 0.86227 1.90630 1.46738 1.20268 1.87691 1.21975 1.03563 0.94269 0.88057 1.61492 1.12476 1.49469 1.02506 1.22226 1.00967 0.96406 0.87583 1.21659 0.95955 0.99717 0.97884 1.21609 0.96042 1.01275 0.94858 1.20927 0.94629 0.94789 0.94967 1.22232 0.97910 0.93696 0.99798 1.22534 0.94386 0.97626 1.01362 1.22354 0.98442 0.95368 1.00101 1.22198 0.94613 0.96478 1.01926 1.22112 0.87070 0.97249 0.99036 0.92076 0.94425 0.88605 0.91242 0.88548 0.96300 0.98877 0.92437 0.90961 0.85794 0.89481 0.94033 0.88954 0.91846 0.91505 0.90344 0.95061 0.91137 0.89611 0.92632 0.89990 0.94235 0.89425 0.93569 0.95580 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.10 3.13 5.95 86.38 0.51 3.65 16 3 N -0.61 -26.53 2.46 -826.16 -2.03 -28.56 16 4 C 0.27 14.87 5.16 85.63 0.44 15.31 16 5 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.50 5.46 84.65 0.46 0.97 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 13 C 0.49 21.33 7.22 87.66 0.63 21.96 16 14 O -0.57 -30.86 14.27 -3.04 -0.04 -30.91 16 15 C 0.05 1.55 4.18 85.55 0.36 1.90 16 16 N -0.53 -15.68 4.04 -901.47 -3.64 -19.32 16 17 C 0.06 1.10 5.45 86.33 0.47 1.57 16 18 C -0.11 -2.00 5.86 30.67 0.18 -1.82 16 19 C -0.10 -1.86 4.51 30.58 0.14 -1.72 16 20 C -0.05 -1.36 0.63 -51.85 -0.03 -1.39 16 21 C -0.10 -2.88 5.41 31.59 0.17 -2.71 16 22 C -0.12 -2.94 6.91 31.92 0.22 -2.72 16 23 C -0.13 -3.10 6.84 31.71 0.22 -2.88 16 24 C -0.11 -2.76 6.11 31.24 0.19 -2.57 16 25 C 0.07 2.33 3.45 86.19 0.30 2.63 16 26 H 0.06 1.41 7.41 -2.39 -0.02 1.39 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.10 2.34 6.27 -2.38 -0.01 2.32 16 31 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 32 H -0.01 -0.45 7.42 -2.38 -0.02 -0.47 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.07 1.87 7.05 -2.39 -0.02 1.85 16 35 H 0.12 2.95 7.24 -2.39 -0.02 2.93 16 36 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.28 6.38 -2.39 -0.02 1.26 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.03 1.23 7.81 -2.38 -0.02 1.21 16 43 H 0.07 1.91 6.01 -2.39 -0.01 1.89 16 44 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.09 1.65 7.67 -2.38 -0.02 1.63 16 49 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 50 H 0.03 0.77 8.14 -2.38 -0.02 0.76 16 51 H 0.04 1.85 6.02 -2.39 -0.01 1.83 16 Total: -1.00 -76.15 384.43 2.71 -73.44 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.87 Total: 17.49 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.24 Total: -2.90 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.38 Total: -105.19 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.04 Total: -30.91 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.15 2.71 -73.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445868708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.910 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds