Wall clock time and date at job start Tue Mar 31 2020 09:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 120.00397 * 2 1 4 4 N 1.34778 * 119.99581 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63336 * 0.02562 * 4 2 1 6 6 C 1.53191 * 108.89109 * 233.68039 * 5 4 2 7 7 C 1.53035 * 109.31327 * 305.29292 * 6 5 4 8 8 C 1.53038 * 109.54175 * 61.36680 * 7 6 5 9 9 H 1.09002 * 109.49557 * 58.58503 * 8 7 6 10 10 C 1.53001 * 109.49833 * 178.68412 * 8 7 6 11 11 C 1.53005 * 109.46792 * 185.00141 * 10 8 7 12 12 H 1.09002 * 109.47325 * 54.99437 * 11 10 8 13 13 N 1.46502 * 109.47110 * 294.99873 * 11 10 8 14 14 C 1.36932 * 120.00180 * 154.99980 * 13 11 10 15 15 H 1.07998 * 119.99930 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99890 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00278 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47262 * 60.00133 * 18 16 14 20 20 H 1.48498 * 109.47090 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47337 * 299.99964 * 18 16 14 22 22 C 1.53002 * 109.46851 * 175.00216 * 11 10 8 23 23 C 1.54263 * 110.02992 * 297.15985 * 22 11 10 24 24 C 1.54886 * 104.19665 * 217.10742 * 23 22 11 25 25 C 1.54889 * 102.74711 * 37.94709 * 24 23 22 26 26 C 1.53876 * 110.02894 * 179.97438 * 22 11 10 27 27 C 1.47207 * 120.81118 * 180.14557 * 4 2 1 28 28 H 1.08991 * 109.47287 * 270.00064 * 1 2 3 29 29 H 1.09004 * 109.46489 * 29.99888 * 1 2 3 30 30 H 1.09000 * 109.47065 * 149.99948 * 1 2 3 31 31 H 1.09002 * 109.58861 * 113.82042 * 5 4 2 32 32 H 1.08996 * 109.58519 * 353.53933 * 5 4 2 33 33 H 1.09003 * 109.49975 * 65.24379 * 6 5 4 34 34 H 1.09004 * 109.49655 * 185.34207 * 6 5 4 35 35 H 1.09003 * 109.46332 * 181.39145 * 7 6 5 36 36 H 1.09005 * 109.46002 * 301.35718 * 7 6 5 37 37 H 1.08998 * 109.46829 * 304.99842 * 10 8 7 38 38 H 1.08995 * 109.46906 * 65.00163 * 10 8 7 39 39 H 0.97005 * 119.99680 * 335.00478 * 13 11 10 40 40 H 0.96997 * 120.00243 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.01734 * 58.60762 * 22 11 10 42 42 H 1.09004 * 110.48744 * 335.78997 * 23 22 11 43 43 H 1.09004 * 110.48141 * 98.43021 * 23 22 11 44 44 H 1.09002 * 110.75916 * 279.62896 * 24 23 22 45 45 H 1.09002 * 110.75438 * 156.25843 * 24 23 22 46 46 H 1.09000 * 110.48244 * 203.37640 * 25 24 23 47 47 H 1.09000 * 110.48778 * 80.73470 * 25 24 23 48 48 H 1.08993 * 110.03422 * 238.56478 * 26 22 11 49 49 H 1.09000 * 110.03362 * 359.97438 * 26 22 11 50 50 H 1.08996 * 109.53610 * 6.53286 * 27 4 2 51 51 H 1.09002 * 109.68003 * 246.22753 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4603 -2.4477 0.0005 6 6 1.9647 -3.3007 1.1687 7 6 3.4858 -3.4389 1.0747 8 6 4.1326 -2.0554 1.1724 9 1 3.8481 -1.5866 2.1144 10 6 5.6548 -2.1978 1.1112 11 6 6.3042 -0.8304 1.3338 12 1 5.9446 -0.4055 2.2710 13 7 5.9536 0.0627 0.2266 14 6 5.9584 1.4193 0.4133 15 1 6.2210 1.8308 1.3767 16 6 5.6267 2.2655 -0.6359 17 7 5.3072 1.7640 -1.8101 18 14 5.6339 4.1160 -0.3813 19 1 6.9952 4.5555 0.0175 20 1 5.2459 4.7911 -1.6458 21 1 4.6659 4.4725 0.6868 22 6 7.8243 -0.9920 1.3969 23 6 8.2124 -1.8733 2.6020 24 6 9.5213 -1.2371 3.1320 25 6 9.2609 0.2793 2.9538 26 6 8.4910 0.3768 1.6199 27 6 3.6528 -1.1882 0.0037 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8901 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6428 -2.9698 -0.9387 32 1 0.3918 -2.2656 0.1156 33 1 1.7006 -2.8201 2.1108 34 1 1.5060 -4.2885 1.1226 35 1 3.8447 -4.0660 1.8909 36 1 3.7506 -3.8969 0.1216 37 1 5.9865 -2.8881 1.8868 38 1 5.9446 -2.5829 0.1336 39 1 5.7180 -0.3069 -0.6387 40 1 5.0758 2.3553 -2.5434 41 1 8.1907 -1.4392 0.4729 42 1 7.4352 -1.8392 3.3656 43 1 8.3895 -2.9002 2.2822 44 1 10.3753 -1.5554 2.5340 45 1 9.6718 -1.4822 4.1834 46 1 10.2033 0.8233 2.8907 47 1 8.6531 0.6610 3.7741 48 1 9.1816 0.5930 0.8049 49 1 7.7316 1.1562 1.6828 50 1 4.0315 -0.1731 0.1223 51 1 4.0160 -1.6063 -0.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098796607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:11 Heat of formation + Delta-G solvation = -36.384719 kcal Electronic energy + Delta-G solvation = -28009.104533 eV Core-core repulsion = 24521.928899 eV Total energy + Delta-G solvation = -3487.175634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69904 -38.33510 -36.95435 -34.89808 -33.11624 -31.75612 -30.65564 -29.52274 -28.68514 -27.76855 -26.25692 -24.60335 -23.88714 -22.06120 -20.87936 -20.22265 -19.78563 -18.90879 -18.32564 -16.91140 -16.51688 -15.39195 -15.20515 -14.97798 -14.74327 -14.60011 -14.17714 -13.81271 -13.49304 -13.47537 -12.90139 -12.88516 -12.69855 -12.65543 -12.43838 -12.20483 -11.84873 -11.57846 -11.27348 -11.15045 -10.84064 -10.81382 -10.71580 -10.67157 -10.62475 -10.45627 -10.44143 -10.29445 -10.20585 -10.06426 -9.87401 -9.63665 -9.48474 -9.11705 -9.03279 -8.52871 -7.99578 -6.69983 -5.59449 -2.85457 3.29874 3.57710 3.60799 3.62589 3.64917 4.76603 4.86277 4.98210 5.06345 5.13492 5.18942 5.21176 5.30079 5.40055 5.41783 5.51061 5.55688 5.66414 5.73616 5.80375 5.84969 5.93124 5.94412 5.99771 6.03543 6.07573 6.08161 6.12469 6.16359 6.23782 6.25776 6.28428 6.34387 6.35044 6.42904 6.47943 6.57338 6.73496 6.74383 6.87136 6.88181 7.04341 7.19462 7.24713 7.36080 7.45049 7.89963 8.09670 8.57742 8.90439 9.70765 10.23415 10.57984 11.62634 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006611 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.752651 B = 4234.083892 C = 6495.621541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.497 3.503 3 O -0.508 6.508 4 N -0.614 5.614 5 C 0.103 3.897 6 C -0.132 4.132 7 C -0.116 4.116 8 C -0.091 4.091 9 H 0.065 0.935 10 C -0.117 4.117 11 C 0.181 3.819 12 H 0.047 0.953 13 N -0.716 5.716 14 C -0.241 4.241 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.921 5.921 18 Si 0.899 3.101 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.286 1.286 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.120 4.120 27 C 0.091 3.909 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.384 0.616 40 H 0.253 0.747 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.096 0.904 50 H 0.166 0.834 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -12.865 6.897 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.284 3.716 3 O -0.382 6.382 4 N -0.349 5.349 5 C -0.021 4.021 6 C -0.170 4.170 7 C -0.154 4.154 8 C -0.110 4.110 9 H 0.084 0.916 10 C -0.156 4.156 11 C 0.071 3.929 12 H 0.065 0.935 13 N -0.358 5.358 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.730 3.270 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.213 1.213 22 C -0.124 4.124 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.030 4.030 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.220 0.780 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.114 0.886 50 H 0.183 0.817 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.145 -12.067 6.904 14.507 hybrid contribution -0.085 0.621 -0.272 0.684 sum -4.230 -11.445 6.632 13.888 Atomic orbital electron populations 1.21963 0.93556 1.04020 1.03831 1.20638 0.89887 0.83874 0.77247 1.90897 1.69864 1.30288 1.47140 1.48321 1.07960 1.04722 1.73901 1.21696 0.96552 0.85558 0.98287 1.21886 0.96898 0.99371 0.98868 1.21624 0.94509 0.97753 1.01508 1.21422 0.95198 0.94567 0.99817 0.91649 1.21882 0.93881 0.98506 1.01306 1.20383 0.90682 0.89117 0.92747 0.93521 1.42717 1.80711 1.02626 1.09794 1.18954 1.39798 0.82409 0.96025 0.91205 1.24557 1.01611 0.97228 0.95832 1.69587 1.52103 1.33622 1.01541 0.86403 0.77190 0.86661 0.76707 1.21746 1.22028 1.21293 1.22429 0.98854 0.94822 0.96325 1.22447 0.96624 0.98256 0.98337 1.22478 0.97884 0.96330 0.99494 1.22429 0.99473 0.95458 0.99093 1.22320 0.99587 0.99147 0.94705 1.22868 0.76814 1.07680 0.95620 0.89706 0.89514 0.90665 0.92117 0.90320 0.91829 0.91516 0.92397 0.92188 0.92095 0.92349 0.77995 0.93760 0.92372 0.92092 0.92829 0.92309 0.92812 0.92933 0.92439 0.93172 0.88554 0.81710 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.46 36.01 0.34 -1.92 16 2 C 0.50 9.48 7.81 -10.98 -0.09 9.39 16 3 O -0.51 -12.89 16.53 5.56 0.09 -12.79 16 4 N -0.61 -10.55 2.98 -172.52 -0.51 -11.07 16 5 C 0.10 1.25 6.21 -3.71 -0.02 1.23 16 6 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 7 C -0.12 -1.45 5.17 -26.69 -0.14 -1.59 16 8 C -0.09 -1.45 2.34 -90.48 -0.21 -1.66 16 9 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 10 C -0.12 -1.86 4.28 -26.73 -0.11 -1.98 16 11 C 0.18 3.43 1.77 -67.93 -0.12 3.31 16 12 H 0.05 0.95 8.05 -51.93 -0.42 0.54 16 13 N -0.72 -16.84 2.73 -53.42 -0.15 -16.99 16 14 C -0.24 -6.48 7.82 -15.06 -0.12 -6.60 16 15 H 0.07 1.87 6.25 -52.49 -0.33 1.54 16 16 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 17 N -0.92 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.90 23.57 29.55 -169.99 -5.02 18.55 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 C -0.10 -1.81 2.69 -89.50 -0.24 -2.05 16 23 C -0.12 -1.70 5.23 -25.08 -0.13 -1.83 16 24 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 25 C -0.13 -1.97 6.83 -25.05 -0.17 -2.14 16 26 C -0.12 -2.26 5.99 -25.59 -0.15 -2.41 16 27 C 0.09 1.78 4.27 -3.54 -0.02 1.76 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.76 6.19 -51.93 -0.32 0.44 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.77 5.52 -51.93 -0.29 0.48 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.84 7.13 -51.93 -0.37 0.47 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.38 9.73 6.12 -40.82 -0.25 9.48 16 40 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.86 7.77 -51.93 -0.40 0.46 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.10 2.09 4.38 -51.93 -0.23 1.86 16 50 H 0.17 4.05 3.92 -51.93 -0.20 3.84 16 51 H 0.05 1.01 7.92 -51.93 -0.41 0.60 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -31.72 376.39 -9.93 -41.65 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -9.12 Total: 11.95 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.61 Total: -9.92 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.06 Total: -55.10 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.72 -9.93 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098796607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.262 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds