Wall clock time and date at job start Tue Mar 31 2020 09:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 120.00397 * 2 1 4 4 N 1.34778 * 119.99581 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63336 * 0.02562 * 4 2 1 6 6 C 1.53191 * 108.89109 * 233.68039 * 5 4 2 7 7 C 1.53035 * 109.31327 * 305.29292 * 6 5 4 8 8 C 1.53038 * 109.54175 * 61.36680 * 7 6 5 9 9 H 1.09002 * 109.49557 * 58.58503 * 8 7 6 10 10 C 1.53001 * 109.49833 * 178.68412 * 8 7 6 11 11 C 1.53005 * 109.46792 * 185.00141 * 10 8 7 12 12 H 1.09002 * 109.47325 * 54.99437 * 11 10 8 13 13 N 1.46502 * 109.47110 * 294.99873 * 11 10 8 14 14 C 1.36932 * 120.00180 * 154.99980 * 13 11 10 15 15 H 1.07998 * 119.99930 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99890 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00278 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47262 * 60.00133 * 18 16 14 20 20 H 1.48498 * 109.47090 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47337 * 299.99964 * 18 16 14 22 22 C 1.53002 * 109.46851 * 175.00216 * 11 10 8 23 23 C 1.54263 * 110.02992 * 297.15985 * 22 11 10 24 24 C 1.54886 * 104.19665 * 217.10742 * 23 22 11 25 25 C 1.54889 * 102.74711 * 37.94709 * 24 23 22 26 26 C 1.53876 * 110.02894 * 179.97438 * 22 11 10 27 27 C 1.47207 * 120.81118 * 180.14557 * 4 2 1 28 28 H 1.08991 * 109.47287 * 270.00064 * 1 2 3 29 29 H 1.09004 * 109.46489 * 29.99888 * 1 2 3 30 30 H 1.09000 * 109.47065 * 149.99948 * 1 2 3 31 31 H 1.09002 * 109.58861 * 113.82042 * 5 4 2 32 32 H 1.08996 * 109.58519 * 353.53933 * 5 4 2 33 33 H 1.09003 * 109.49975 * 65.24379 * 6 5 4 34 34 H 1.09004 * 109.49655 * 185.34207 * 6 5 4 35 35 H 1.09003 * 109.46332 * 181.39145 * 7 6 5 36 36 H 1.09005 * 109.46002 * 301.35718 * 7 6 5 37 37 H 1.08998 * 109.46829 * 304.99842 * 10 8 7 38 38 H 1.08995 * 109.46906 * 65.00163 * 10 8 7 39 39 H 0.97005 * 119.99680 * 335.00478 * 13 11 10 40 40 H 0.96997 * 120.00243 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.01734 * 58.60762 * 22 11 10 42 42 H 1.09004 * 110.48744 * 335.78997 * 23 22 11 43 43 H 1.09004 * 110.48141 * 98.43021 * 23 22 11 44 44 H 1.09002 * 110.75916 * 279.62896 * 24 23 22 45 45 H 1.09002 * 110.75438 * 156.25843 * 24 23 22 46 46 H 1.09000 * 110.48244 * 203.37640 * 25 24 23 47 47 H 1.09000 * 110.48778 * 80.73470 * 25 24 23 48 48 H 1.08993 * 110.03422 * 238.56478 * 26 22 11 49 49 H 1.09000 * 110.03362 * 359.97438 * 26 22 11 50 50 H 1.08996 * 109.53610 * 6.53286 * 27 4 2 51 51 H 1.09002 * 109.68003 * 246.22753 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4603 -2.4477 0.0005 6 6 1.9647 -3.3007 1.1687 7 6 3.4858 -3.4389 1.0747 8 6 4.1326 -2.0554 1.1724 9 1 3.8481 -1.5866 2.1144 10 6 5.6548 -2.1978 1.1112 11 6 6.3042 -0.8304 1.3338 12 1 5.9446 -0.4055 2.2710 13 7 5.9536 0.0627 0.2266 14 6 5.9584 1.4193 0.4133 15 1 6.2210 1.8308 1.3767 16 6 5.6267 2.2655 -0.6359 17 7 5.3072 1.7640 -1.8101 18 14 5.6339 4.1160 -0.3813 19 1 6.9952 4.5555 0.0175 20 1 5.2459 4.7911 -1.6458 21 1 4.6659 4.4725 0.6868 22 6 7.8243 -0.9920 1.3969 23 6 8.2124 -1.8733 2.6020 24 6 9.5213 -1.2371 3.1320 25 6 9.2609 0.2793 2.9538 26 6 8.4910 0.3768 1.6199 27 6 3.6528 -1.1882 0.0037 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8901 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6428 -2.9698 -0.9387 32 1 0.3918 -2.2656 0.1156 33 1 1.7006 -2.8201 2.1108 34 1 1.5060 -4.2885 1.1226 35 1 3.8447 -4.0660 1.8909 36 1 3.7506 -3.8969 0.1216 37 1 5.9865 -2.8881 1.8868 38 1 5.9446 -2.5829 0.1336 39 1 5.7180 -0.3069 -0.6387 40 1 5.0758 2.3553 -2.5434 41 1 8.1907 -1.4392 0.4729 42 1 7.4352 -1.8392 3.3656 43 1 8.3895 -2.9002 2.2822 44 1 10.3753 -1.5554 2.5340 45 1 9.6718 -1.4822 4.1834 46 1 10.2033 0.8233 2.8907 47 1 8.6531 0.6610 3.7741 48 1 9.1816 0.5930 0.8049 49 1 7.7316 1.1562 1.6828 50 1 4.0315 -0.1731 0.1223 51 1 4.0160 -1.6063 -0.9351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098796607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:11 Heat of formation + Delta-G solvation = -55.279711 kcal Electronic energy + Delta-G solvation = -28009.923882 eV Core-core repulsion = 24521.928899 eV Total energy + Delta-G solvation = -3487.994983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07690 -39.80320 -38.31989 -36.43815 -34.78162 -33.32447 -32.00979 -31.01347 -30.08484 -29.17007 -27.55416 -26.00047 -25.67746 -23.43232 -22.25097 -21.46249 -21.12103 -20.41159 -19.64046 -18.90918 -17.84951 -16.90115 -16.65877 -16.37069 -16.26879 -15.97889 -15.67167 -15.26849 -15.06045 -14.85656 -14.26114 -14.23662 -14.05893 -13.92911 -13.72424 -13.47435 -13.29570 -12.89329 -12.86764 -12.82397 -12.54443 -12.45557 -12.25289 -12.06894 -11.85164 -11.80295 -11.74927 -11.74125 -11.58491 -11.41379 -11.32266 -11.26041 -11.02286 -10.91676 -10.60323 -10.45269 -9.39693 -8.70268 -7.82421 -5.02268 1.39359 1.45923 1.46842 1.86016 2.31885 2.62102 3.55111 3.72830 3.83891 3.87215 3.94855 4.03242 4.05321 4.12174 4.19051 4.29760 4.41758 4.43121 4.54924 4.56658 4.63003 4.69557 4.71037 4.73553 4.80893 4.88795 4.91354 4.93209 5.00363 5.03492 5.05223 5.10767 5.14772 5.15462 5.20477 5.25141 5.30379 5.34597 5.41100 5.47735 5.56062 5.58878 5.60687 5.76881 5.79643 5.85012 5.88838 6.38812 6.72944 7.48426 7.48569 8.23674 8.45199 9.40188 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006611 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.752651 B = 4234.083892 C = 6495.621541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.480 3.520 3 O -0.590 6.590 4 N -0.614 5.614 5 C 0.094 3.906 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.082 4.082 9 H 0.049 0.951 10 C -0.107 4.107 11 C 0.178 3.822 12 H 0.030 0.970 13 N -0.719 5.719 14 C -0.213 4.213 15 H 0.067 0.933 16 C -0.057 4.057 17 N -0.952 5.952 18 Si 0.943 3.057 19 H -0.278 1.278 20 H -0.302 1.302 21 H -0.295 1.295 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.125 4.125 27 C 0.092 3.908 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.374 0.626 40 H 0.240 0.760 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.114 0.886 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 -16.638 9.120 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.269 3.731 3 O -0.470 6.470 4 N -0.347 5.347 5 C -0.028 4.028 6 C -0.164 4.164 7 C -0.149 4.149 8 C -0.101 4.101 9 H 0.067 0.933 10 C -0.146 4.146 11 C 0.070 3.930 12 H 0.048 0.952 13 N -0.360 5.360 14 C -0.345 4.345 15 H 0.085 0.915 16 C -0.251 4.251 17 N -0.603 5.603 18 Si 0.775 3.225 19 H -0.205 1.205 20 H -0.229 1.229 21 H -0.222 1.222 22 C -0.120 4.120 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.031 4.031 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.208 0.792 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.050 0.950 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.790 -15.915 9.179 18.987 hybrid contribution 0.114 1.735 -0.908 1.962 sum -4.676 -14.181 8.271 17.069 Atomic orbital electron populations 1.21932 0.88407 1.05645 1.05899 1.21832 0.92436 0.83161 0.75646 1.90859 1.71922 1.33155 1.51045 1.48474 1.07314 1.06514 1.72378 1.22111 0.97900 0.83191 0.99598 1.21890 0.95725 1.00943 0.97875 1.21598 0.95547 0.95034 1.02698 1.21318 0.95388 0.96329 0.97069 0.93252 1.21818 0.93752 0.96741 1.02268 1.20581 0.92125 0.90026 0.90279 0.95166 1.42789 1.80678 1.01997 1.10539 1.19162 1.36003 0.84132 0.95159 0.91534 1.25096 1.03647 1.00051 0.96262 1.69721 1.54960 1.33662 1.01920 0.85662 0.77313 0.83804 0.75724 1.20454 1.22860 1.22237 1.22299 0.97041 0.94903 0.97786 1.22395 0.97231 0.98603 0.96554 1.22459 0.97595 0.94068 1.01239 1.22391 0.99292 0.97677 0.96735 1.22259 0.98754 0.98853 0.96386 1.22455 0.78874 1.05414 0.96309 0.87198 0.89933 0.86975 0.91213 0.87081 0.92074 0.87693 0.89991 0.91800 0.88685 0.92584 0.79237 0.95128 0.93461 0.91391 0.90503 0.91542 0.90226 0.92041 0.92303 0.95038 0.92232 0.86802 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.46 71.24 0.67 -3.19 16 2 C 0.48 18.73 7.81 87.66 0.68 19.42 16 3 O -0.59 -32.03 16.53 -3.01 -0.05 -32.08 16 4 N -0.61 -21.05 2.98 -818.12 -2.44 -23.49 16 5 C 0.09 1.98 6.21 86.36 0.54 2.52 16 6 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 7 C -0.11 -2.39 5.17 30.62 0.16 -2.23 16 8 C -0.08 -2.54 2.34 -10.70 -0.03 -2.57 16 9 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 10 C -0.11 -3.29 4.28 30.60 0.13 -3.16 16 11 C 0.18 6.89 1.77 44.99 0.08 6.97 16 12 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 13 N -0.72 -35.80 2.73 -322.92 -0.88 -36.68 16 14 C -0.21 -12.13 7.82 84.04 0.66 -11.47 16 15 H 0.07 3.78 6.25 -2.91 -0.02 3.76 16 16 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 17 N -0.95 -61.28 13.06 21.65 0.28 -61.00 16 18 Si 0.94 51.24 29.55 68.60 2.03 53.27 16 19 H -0.28 -14.30 7.11 99.48 0.71 -13.60 16 20 H -0.30 -16.65 7.11 99.48 0.71 -15.94 16 21 H -0.29 -16.22 7.11 99.48 0.71 -15.52 16 22 C -0.10 -3.45 2.69 -10.07 -0.03 -3.47 16 23 C -0.11 -2.81 5.23 31.67 0.17 -2.65 16 24 C -0.12 -2.79 6.91 31.88 0.22 -2.57 16 25 C -0.12 -3.66 6.83 31.69 0.22 -3.44 16 26 C -0.12 -4.80 5.99 31.34 0.19 -4.61 16 27 C 0.09 3.73 4.27 86.32 0.37 4.10 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.11 1.84 6.19 -2.39 -0.01 1.82 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.64 5.52 -2.39 -0.01 1.62 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 2.29 7.13 -2.39 -0.02 2.28 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.37 20.22 6.12 -92.70 -0.57 19.65 16 40 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.68 7.77 -2.39 -0.02 1.66 16 43 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 2.71 4.38 -2.39 -0.01 2.70 16 50 H 0.11 5.98 3.92 -2.39 -0.01 5.97 16 51 H 0.03 1.33 7.92 -2.39 -0.02 1.31 16 Total: -1.00 -78.60 376.39 3.95 -74.65 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.33 Total: 36.78 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.68 Total: -11.44 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -3.04 Total: -121.17 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.03 Total: 53.27 kcal Total: -78.60 3.95 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098796607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.370 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds