Wall clock time and date at job start Tue Mar 31 2020 09:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 C 1.52938 * 109.41132 * 300.14106 * 20 18 17 22 22 C 1.53195 * 109.44363 * 176.83975 * 21 20 18 23 23 C 1.53148 * 108.82823 * 56.67452 * 22 21 20 24 24 C 1.52850 * 117.67615 * 91.45330 * 23 22 21 25 25 C 1.52812 * 117.75127 * 160.33320 * 23 22 21 26 26 C 1.53151 * 115.00720 * 306.01730 * 23 22 21 27 27 C 1.52942 * 109.41319 * 179.84964 * 20 18 17 28 28 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 32 32 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 33 33 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 37 37 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 38 38 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 39 39 H 1.09004 * 109.41304 * 59.99550 * 20 18 17 40 40 H 1.08991 * 109.47527 * 296.90360 * 21 20 18 41 41 H 1.09002 * 109.47345 * 56.91858 * 21 20 18 42 42 H 1.09004 * 109.63012 * 296.84881 * 22 21 20 43 43 H 1.09002 * 109.56015 * 176.45507 * 22 21 20 44 44 H 1.08997 * 117.50111 * 215.22044 * 24 23 22 45 45 H 1.08993 * 117.50387 * 0.27569 * 24 23 22 46 46 H 1.09003 * 117.49725 * 359.85136 * 25 23 22 47 47 H 1.08998 * 117.50373 * 144.88848 * 25 23 22 48 48 H 1.08996 * 109.56951 * 294.12123 * 26 23 22 49 49 H 1.08998 * 109.66867 * 173.81453 * 26 23 22 50 50 H 1.09002 * 109.47099 * 303.08682 * 27 20 18 51 51 H 1.09000 * 109.47177 * 63.09097 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 8.1825 -0.0762 1.1660 15 1 7.5571 -0.7941 3.3959 16 1 8.5655 -2.3703 1.8534 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 6 1.7059 -1.8839 3.9278 22 6 2.2574 -2.6550 5.1311 23 6 2.4392 -1.6826 6.3002 24 6 1.2726 -1.5171 7.2739 25 6 2.5318 -2.2711 7.7074 26 6 3.2860 -0.4454 5.9876 27 6 2.7035 0.2558 4.7566 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -0.2616 -2.1370 32 1 1.7516 -1.7714 -1.2057 33 1 3.6263 -0.6885 -3.4659 34 1 5.1507 -1.1476 -2.6703 35 1 3.7722 -2.2739 -2.6701 36 1 3.6648 -2.0584 0.2384 37 1 5.6853 -3.1389 2.6627 38 1 2.2491 -1.6318 1.1525 39 1 3.6481 -1.1210 3.3974 40 1 0.7194 -1.4884 4.1693 41 1 1.6291 -2.5544 3.0719 42 1 3.2189 -3.0987 4.8724 43 1 1.5557 -3.4395 5.4146 44 1 1.1079 -0.5267 7.6983 45 1 0.3737 -2.1043 7.0869 46 1 2.4610 -3.3544 7.8056 47 1 3.1953 -1.7768 8.4171 48 1 4.3130 -0.7480 5.7835 49 1 3.2682 0.2359 6.8382 50 1 3.3344 1.1034 4.4886 51 1 1.6971 0.6088 4.9816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135023708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:56 Heat of formation + Delta-G solvation = -29.891479 kcal Electronic energy + Delta-G solvation = -27876.197777 eV Core-core repulsion = 24389.303711 eV Total energy + Delta-G solvation = -3486.894066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80398 -38.51997 -36.75018 -34.38434 -34.01052 -32.20903 -30.80597 -30.25887 -28.55092 -27.42216 -26.28413 -23.64737 -22.67568 -22.50921 -22.00399 -20.53431 -20.15742 -19.23009 -18.29181 -17.15928 -16.44450 -15.79478 -15.16680 -14.88626 -14.77297 -14.33004 -13.83744 -13.73450 -13.45153 -13.32066 -13.03220 -12.90807 -12.72744 -12.31534 -12.10110 -11.97268 -11.81762 -11.75849 -11.63818 -11.60770 -11.48785 -11.33559 -10.97619 -10.83859 -10.72798 -10.69393 -10.34421 -10.23300 -10.21226 -9.87166 -9.79523 -9.78234 -9.66612 -9.42688 -8.93954 -8.84593 -8.23087 -6.92632 -5.79489 -3.04953 3.41508 3.49389 3.49896 3.50860 3.88488 4.01533 4.59083 4.76767 4.91725 5.03341 5.14553 5.16653 5.36175 5.41845 5.48796 5.56620 5.59549 5.62221 5.67426 5.71822 5.72631 5.84909 5.90157 5.92728 5.97019 6.01363 6.04132 6.06132 6.16118 6.18117 6.21694 6.26816 6.34294 6.37064 6.40099 6.46637 6.49845 6.53244 6.57014 6.60409 6.63787 6.76589 6.88036 6.95736 7.07829 7.32150 7.71591 8.34282 8.41030 9.08226 9.51483 10.05819 10.41821 11.42623 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.005993 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.791243 B = 4671.011406 C = 6353.443879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.225 4.225 10 H 0.066 0.934 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.896 3.104 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.294 1.294 17 N -0.697 5.697 18 C 0.534 3.466 19 O -0.570 6.570 20 C -0.109 4.109 21 C -0.095 4.095 22 C -0.078 4.078 23 C -0.112 4.112 24 C -0.178 4.178 25 C -0.180 4.180 26 C -0.081 4.081 27 C -0.090 4.090 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.253 0.747 38 H 0.404 0.596 39 H 0.125 0.875 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 -0.085 3.621 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.060 3.940 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.357 4.357 10 H 0.084 0.916 11 C -0.205 4.205 12 N -0.580 5.580 13 Si 0.728 3.272 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.222 1.222 17 N -0.349 5.349 18 C 0.321 3.679 19 O -0.450 6.450 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.215 4.215 25 C -0.217 4.217 26 C -0.119 4.119 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.213 0.787 37 H 0.063 0.937 38 H 0.242 0.758 39 H 0.143 0.857 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.610 0.826 3.672 10.321 hybrid contribution 1.091 -0.540 0.436 1.293 sum -8.519 0.285 4.107 9.462 Atomic orbital electron populations 1.22199 0.96544 1.01458 1.01750 1.20763 0.92318 0.97694 0.84900 0.90153 1.22194 0.97748 1.00538 0.96670 1.20273 0.89758 0.95837 0.88165 0.93517 1.22424 1.01484 1.00326 0.98127 1.42452 1.18493 1.40070 1.34850 1.19236 0.93020 1.12830 1.10580 0.91555 1.24555 0.98187 0.98720 0.99076 1.69600 1.37672 1.24473 1.26217 0.86273 0.84925 0.77387 0.78603 1.20910 1.21912 1.22158 1.45977 1.65947 1.14343 1.08639 1.20455 0.75884 0.86734 0.84782 1.90584 1.51986 1.16540 1.85891 1.21320 1.03158 0.96067 0.92411 1.21353 0.97741 0.96289 0.97949 1.21121 1.01782 0.95724 0.92892 1.21525 1.00434 0.98590 0.90698 1.22982 0.92612 1.01491 1.04365 1.22961 1.00985 0.99659 0.98140 1.21163 0.98797 0.94202 0.97712 1.21244 1.01275 0.97295 0.93032 0.92358 0.92931 0.92511 0.91017 0.91852 0.94649 0.92919 0.93638 0.78691 0.93731 0.75844 0.85737 0.92639 0.91478 0.90362 0.92300 0.89260 0.89238 0.89124 0.89225 0.91233 0.92257 0.91543 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 2 C 0.15 2.43 2.57 -67.93 -0.17 2.25 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 5 C 0.17 3.15 2.89 -67.93 -0.20 2.95 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 8 N -0.72 -15.89 3.84 -53.43 -0.21 -16.09 16 9 C -0.23 -5.78 9.93 -15.06 -0.15 -5.92 16 10 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 12 N -0.93 -24.20 12.83 55.49 0.71 -23.48 16 13 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 N -0.70 -12.52 3.67 -53.81 -0.20 -12.72 16 18 C 0.53 10.56 7.12 -10.99 -0.08 10.48 16 19 O -0.57 -12.74 15.62 5.55 0.09 -12.65 16 20 C -0.11 -1.96 2.44 -91.83 -0.22 -2.18 16 21 C -0.10 -1.46 5.13 -26.66 -0.14 -1.60 16 22 C -0.08 -1.11 5.68 -26.55 -0.15 -1.26 16 23 C -0.11 -1.52 1.97 -154.53 -0.30 -1.83 16 24 C -0.18 -2.09 9.93 -26.79 -0.27 -2.36 16 25 C -0.18 -2.12 9.99 -26.81 -0.27 -2.39 16 26 C -0.08 -1.21 5.67 -26.56 -0.15 -1.36 16 27 C -0.09 -1.53 4.51 -26.67 -0.12 -1.65 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.38 8.58 5.70 -40.82 -0.23 8.34 16 37 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.40 7.36 5.87 -40.82 -0.24 7.12 16 39 H 0.12 2.65 7.91 -51.93 -0.41 2.23 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.02 7.46 -51.93 -0.39 0.64 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 50 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -27.25 396.79 -10.03 -37.28 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -9.65 Total: 16.80 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.73 Total: -11.67 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.31 Total: -52.30 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.25 -10.03 -37.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135023708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.388 kcal (2) G-P(sol) polarization free energy of solvation -27.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds