Wall clock time and date at job start Tue Mar 31 2020 09:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 C 1.52938 * 109.41132 * 300.14106 * 20 18 17 22 22 C 1.53195 * 109.44363 * 176.83975 * 21 20 18 23 23 C 1.53148 * 108.82823 * 56.67452 * 22 21 20 24 24 C 1.52850 * 117.67615 * 91.45330 * 23 22 21 25 25 C 1.52812 * 117.75127 * 160.33320 * 23 22 21 26 26 C 1.53151 * 115.00720 * 306.01730 * 23 22 21 27 27 C 1.52942 * 109.41319 * 179.84964 * 20 18 17 28 28 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 32 32 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 33 33 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 37 37 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 38 38 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 39 39 H 1.09004 * 109.41304 * 59.99550 * 20 18 17 40 40 H 1.08991 * 109.47527 * 296.90360 * 21 20 18 41 41 H 1.09002 * 109.47345 * 56.91858 * 21 20 18 42 42 H 1.09004 * 109.63012 * 296.84881 * 22 21 20 43 43 H 1.09002 * 109.56015 * 176.45507 * 22 21 20 44 44 H 1.08997 * 117.50111 * 215.22044 * 24 23 22 45 45 H 1.08993 * 117.50387 * 0.27569 * 24 23 22 46 46 H 1.09003 * 117.49725 * 359.85136 * 25 23 22 47 47 H 1.08998 * 117.50373 * 144.88848 * 25 23 22 48 48 H 1.08996 * 109.56951 * 294.12123 * 26 23 22 49 49 H 1.08998 * 109.66867 * 173.81453 * 26 23 22 50 50 H 1.09002 * 109.47099 * 303.08682 * 27 20 18 51 51 H 1.09000 * 109.47177 * 63.09097 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 8.1825 -0.0762 1.1660 15 1 7.5571 -0.7941 3.3959 16 1 8.5655 -2.3703 1.8534 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 6 1.7059 -1.8839 3.9278 22 6 2.2574 -2.6550 5.1311 23 6 2.4392 -1.6826 6.3002 24 6 1.2726 -1.5171 7.2739 25 6 2.5318 -2.2711 7.7074 26 6 3.2860 -0.4454 5.9876 27 6 2.7035 0.2558 4.7566 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -0.2616 -2.1370 32 1 1.7516 -1.7714 -1.2057 33 1 3.6263 -0.6885 -3.4659 34 1 5.1507 -1.1476 -2.6703 35 1 3.7722 -2.2739 -2.6701 36 1 3.6648 -2.0584 0.2384 37 1 5.6853 -3.1389 2.6627 38 1 2.2491 -1.6318 1.1525 39 1 3.6481 -1.1210 3.3974 40 1 0.7194 -1.4884 4.1693 41 1 1.6291 -2.5544 3.0719 42 1 3.2189 -3.0987 4.8724 43 1 1.5557 -3.4395 5.4146 44 1 1.1079 -0.5267 7.6983 45 1 0.3737 -2.1043 7.0869 46 1 2.4610 -3.3544 7.8056 47 1 3.1953 -1.7768 8.4171 48 1 4.3130 -0.7480 5.7835 49 1 3.2682 0.2359 6.8382 50 1 3.3344 1.1034 4.4886 51 1 1.6971 0.6088 4.9816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135023708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:55 Heat of formation + Delta-G solvation = -42.603046 kcal Electronic energy + Delta-G solvation = -27876.748992 eV Core-core repulsion = 24389.303711 eV Total energy + Delta-G solvation = -3487.445281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21153 -39.75772 -38.26455 -35.83327 -35.47686 -33.96444 -32.20163 -31.60873 -30.23200 -28.66385 -27.57349 -25.55015 -23.91158 -23.72118 -23.06615 -21.88596 -21.65396 -20.69409 -19.50178 -19.07690 -17.91791 -17.24251 -16.62574 -16.18234 -16.12401 -15.80962 -15.47367 -15.42640 -14.86743 -14.59725 -14.30783 -14.27748 -14.17393 -13.65053 -13.57788 -13.31251 -13.20691 -13.05498 -12.95244 -12.86266 -12.79401 -12.71282 -12.54217 -12.32204 -12.26350 -12.10895 -11.94894 -11.71034 -11.61334 -11.58231 -11.38803 -11.04005 -10.92482 -10.84631 -10.56232 -10.28204 -9.74810 -8.78903 -7.82526 -5.04545 1.43881 1.48997 1.52775 1.92815 2.53963 2.61479 2.94353 3.50192 3.67534 3.76153 3.82571 3.93411 4.01005 4.07078 4.16703 4.20607 4.26122 4.35166 4.41250 4.42769 4.58265 4.58542 4.61627 4.71550 4.84071 4.84127 4.87870 4.88808 4.93381 4.93980 5.05643 5.08700 5.10052 5.12632 5.14423 5.15483 5.19203 5.27855 5.33381 5.34494 5.38376 5.43528 5.49906 5.55460 5.62274 5.65216 5.87903 6.39840 6.82995 7.48682 7.53592 8.20594 8.48424 9.38048 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.005993 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.791243 B = 4671.011406 C = 6353.443879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.051 0.949 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.228 4.228 10 H 0.053 0.947 11 C -0.047 4.047 12 N -0.935 5.935 13 Si 0.936 3.064 14 H -0.285 1.285 15 H -0.298 1.298 16 H -0.296 1.296 17 N -0.691 5.691 18 C 0.525 3.475 19 O -0.602 6.602 20 C -0.103 4.103 21 C -0.087 4.087 22 C -0.072 4.072 23 C -0.135 4.135 24 C -0.164 4.164 25 C -0.170 4.170 26 C -0.075 4.075 27 C -0.085 4.085 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.048 0.952 36 H 0.375 0.625 37 H 0.248 0.752 38 H 0.403 0.597 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.039 0.961 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 -0.983 3.499 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.070 0.930 4 C -0.157 4.157 5 C 0.054 3.946 6 H 0.044 0.956 7 C -0.213 4.213 8 N -0.362 5.362 9 C -0.361 4.361 10 H 0.071 0.929 11 C -0.241 4.241 12 N -0.586 5.586 13 Si 0.769 3.231 14 H -0.211 1.211 15 H -0.226 1.226 16 H -0.224 1.224 17 N -0.341 5.341 18 C 0.313 3.687 19 O -0.485 6.485 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.201 4.201 25 C -0.207 4.207 26 C -0.113 4.113 27 C -0.123 4.123 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.210 0.790 37 H 0.058 0.942 38 H 0.241 0.759 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.058 0.942 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.565 -0.079 3.507 12.086 hybrid contribution 1.717 -0.200 0.401 1.774 sum -9.848 -0.279 3.908 10.599 Atomic orbital electron populations 1.22085 0.93931 1.02635 1.02131 1.20919 0.94306 0.96122 0.84785 0.93044 1.22110 0.94817 1.01486 0.97295 1.20478 0.92188 0.94290 0.87692 0.95593 1.22270 1.00035 1.00825 0.98193 1.42486 1.17502 1.40240 1.35925 1.19294 0.94266 1.12127 1.10414 0.92933 1.24950 1.00068 0.99403 0.99724 1.69656 1.37974 1.24747 1.26180 0.85640 0.82974 0.76827 0.77684 1.21086 1.22596 1.22387 1.46021 1.65120 1.14187 1.08785 1.20811 0.75656 0.86465 0.85758 1.90555 1.53683 1.17781 1.86454 1.21234 1.01848 0.97079 0.92232 1.21297 0.97403 0.95181 0.98577 1.21047 1.01015 0.96191 0.92678 1.21427 1.02322 0.98199 0.91575 1.23059 0.92590 1.02055 1.02402 1.23041 1.00936 1.00414 0.96290 1.21077 0.97820 0.95242 0.97128 1.21177 1.00963 0.96434 0.93742 0.89785 0.91273 0.94345 0.87537 0.90564 0.91329 0.95300 0.93289 0.78985 0.94212 0.75902 0.89131 0.91584 0.91647 0.92682 0.90041 0.88644 0.87985 0.88060 0.88578 0.93305 0.90610 0.94164 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.48 71.98 0.68 -3.12 16 2 C 0.14 4.56 2.57 44.99 0.12 4.68 16 3 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 4 C -0.12 -3.31 4.43 30.60 0.14 -3.18 16 5 C 0.16 5.89 2.89 44.99 0.13 6.02 16 6 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 7 C -0.15 -4.99 9.49 71.98 0.68 -4.31 16 8 N -0.72 -32.16 3.84 -322.94 -1.24 -33.40 16 9 C -0.23 -11.98 9.93 84.03 0.83 -11.14 16 10 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 11 C -0.05 -2.51 5.50 84.86 0.47 -2.04 16 12 N -0.94 -49.60 12.83 21.65 0.28 -49.32 16 13 Si 0.94 45.35 29.55 68.60 2.03 47.37 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 16 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 17 N -0.69 -24.99 3.67 -442.53 -1.63 -26.61 16 18 C 0.53 21.40 7.12 87.66 0.62 22.02 16 19 O -0.60 -27.86 15.62 -3.04 -0.05 -27.91 16 20 C -0.10 -3.84 2.44 -11.58 -0.03 -3.87 16 21 C -0.09 -2.63 5.13 30.64 0.16 -2.47 16 22 C -0.07 -1.98 5.68 30.71 0.17 -1.81 16 23 C -0.14 -3.49 1.97 -52.19 -0.10 -3.59 16 24 C -0.16 -3.42 9.93 30.56 0.30 -3.12 16 25 C -0.17 -3.59 9.99 30.54 0.31 -3.28 16 26 C -0.08 -2.25 5.67 30.70 0.17 -2.08 16 27 C -0.09 -2.99 4.51 30.63 0.14 -2.85 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.38 17.09 5.70 -92.71 -0.53 16.56 16 37 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 38 H 0.40 14.72 5.87 -92.71 -0.54 14.18 16 39 H 0.09 4.06 7.91 -2.39 -0.02 4.04 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.98 7.46 -2.39 -0.02 1.96 16 42 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 44 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 49 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 50 H 0.04 1.57 8.02 -2.39 -0.02 1.56 16 51 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -60.61 396.79 4.00 -56.61 By element: Atomic # 1 Polarization: 47.58 SS G_CDS: -0.19 Total: 47.39 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.79 Total: -14.14 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -2.59 Total: -109.33 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -60.61 4.00 -56.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135023708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.009 kcal (2) G-P(sol) polarization free energy of solvation -60.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds