Wall clock time and date at job start Tue Mar 31 2020 09:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47217 * 2 1 4 4 C 1.52996 * 109.47101 * 120.00257 * 2 1 3 5 5 N 1.46504 * 109.47262 * 174.99700 * 4 2 1 6 6 C 1.46498 * 120.00139 * 89.99822 * 5 4 2 7 7 C 1.36933 * 120.00071 * 270.00132 * 5 4 2 8 8 H 1.08003 * 120.00439 * 21.99865 * 7 5 4 9 9 C 1.38813 * 120.00319 * 201.99900 * 7 5 4 10 10 N 1.31625 * 119.99973 * 14.22438 * 9 7 5 11 11 Si 1.86795 * 120.00303 * 194.22642 * 9 7 5 12 12 H 1.48504 * 109.47312 * 89.99863 * 11 9 7 13 13 H 1.48499 * 109.47211 * 209.99714 * 11 9 7 14 14 H 1.48503 * 109.47347 * 329.99831 * 11 9 7 15 15 N 1.46503 * 109.46860 * 240.00097 * 2 1 3 16 16 C 1.34775 * 119.99995 * 85.00060 * 15 2 1 17 17 O 1.21275 * 120.00013 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99888 * 179.97438 * 16 15 2 19 19 C 1.53005 * 109.46846 * 60.00322 * 18 16 15 20 20 C 1.53780 * 113.61087 * 179.97438 * 19 18 16 21 21 C 1.53787 * 87.08115 * 139.98042 * 20 19 18 22 22 C 1.53777 * 87.17114 * 334.52191 * 21 20 19 23 23 C 1.52998 * 109.47037 * 179.97438 * 18 16 15 24 24 C 1.53788 * 113.61221 * 159.13787 * 23 18 16 25 25 C 1.53958 * 87.01776 * 220.05027 * 24 23 18 26 26 C 1.53785 * 87.11355 * 25.36546 * 25 24 23 27 27 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46579 * 299.99979 * 1 2 3 29 29 H 1.08995 * 109.47160 * 59.99414 * 1 2 3 30 30 H 1.08994 * 109.47221 * 294.99735 * 4 2 1 31 31 H 1.09000 * 109.47567 * 54.99831 * 4 2 1 32 32 H 1.08999 * 109.47179 * 95.14532 * 6 5 4 33 33 H 1.09002 * 109.47579 * 215.14640 * 6 5 4 34 34 H 1.09002 * 109.46804 * 335.14506 * 6 5 4 35 35 H 0.96990 * 119.99984 * 180.02562 * 10 9 7 36 36 H 0.97005 * 119.99881 * 265.00084 * 15 2 1 37 37 H 1.09000 * 109.47506 * 300.00330 * 18 16 15 38 38 H 1.09002 * 112.85275 * 48.80464 * 19 18 16 39 39 H 1.08996 * 113.61996 * 25.43277 * 20 19 18 40 40 H 1.08999 * 113.61626 * 254.52646 * 20 19 18 41 41 H 1.08998 * 113.61285 * 89.11816 * 21 20 19 42 42 H 1.09003 * 113.61159 * 219.93440 * 21 20 19 43 43 H 1.08995 * 113.61147 * 140.02123 * 22 21 20 44 44 H 1.08999 * 113.61528 * 270.93015 * 22 21 20 45 45 H 1.08992 * 112.85394 * 290.33697 * 23 18 16 46 46 H 1.09002 * 113.61368 * 334.56974 * 24 23 18 47 47 H 1.08998 * 113.61380 * 105.47689 * 24 23 18 48 48 H 1.09000 * 113.53719 * 270.80879 * 25 24 23 49 49 H 1.09003 * 113.74168 * 139.94462 * 25 24 23 50 50 H 1.08999 * 113.61350 * 220.09082 * 26 25 24 51 51 H 1.08991 * 113.61639 * 89.18303 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.3344 0.2339 1.7612 7 6 4.0849 -1.9159 0.6022 8 1 3.5311 -2.5058 -0.1132 9 6 5.3897 -2.2624 0.9252 10 7 5.9686 -1.7335 1.9825 11 14 6.3242 -3.4791 -0.1404 12 1 7.0471 -2.7464 -1.2109 13 1 7.3001 -4.2224 0.6964 14 1 5.3685 -4.4358 -0.7540 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6498 -0.7285 -3.5875 19 6 1.7061 -1.8827 -3.9315 20 6 2.1318 -2.6756 -5.1785 21 6 1.7105 -3.9447 -4.4188 22 6 1.9775 -3.1644 -3.1209 23 6 2.7006 0.2544 -4.7589 24 6 3.6428 -0.1856 -5.8919 25 6 4.0686 1.2898 -6.0020 26 6 3.6544 1.4385 -4.5285 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -0.1584 2.1369 31 1 1.6054 -1.7198 1.2951 32 1 4.6183 -0.0351 2.7786 33 1 5.2314 0.3568 1.1542 34 1 3.7743 1.1689 1.7753 35 1 6.8804 -1.9753 2.2080 36 1 2.2490 -1.6318 -1.1527 37 1 3.6491 -1.1204 -3.3980 38 1 0.6579 -1.5840 -3.9412 39 1 3.2009 -2.6248 -5.3844 40 1 1.5202 -2.4693 -6.0568 41 1 0.6631 -4.2109 -4.5607 42 1 2.3855 -4.7874 -4.5684 43 1 1.2415 -3.3523 -2.3392 44 1 3.0046 -3.2468 -2.7653 45 1 1.7108 0.5520 -5.1049 46 1 4.4433 -0.8477 -5.5617 47 1 3.1212 -0.5574 -6.7738 48 1 3.4533 1.8703 -6.6893 49 1 5.1367 1.4268 -6.1713 50 1 3.1423 2.3759 -4.3114 51 1 4.4580 1.2213 -3.8250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:58 Heat of formation + Delta-G solvation = 9.463142 kcal Electronic energy + Delta-G solvation = -27986.398958 eV Core-core repulsion = 24501.211436 eV Total energy + Delta-G solvation = -3485.187522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41436 -38.28604 -37.73961 -36.20714 -33.94683 -31.66902 -30.77303 -29.57095 -26.18171 -26.05358 -25.61489 -25.21590 -24.45664 -23.14052 -21.66514 -20.29410 -19.65276 -19.56712 -18.79278 -17.08603 -16.36176 -15.81985 -15.53441 -15.26281 -15.02701 -14.62606 -14.35912 -13.85667 -13.71149 -13.32219 -12.93201 -12.90595 -12.50641 -12.38102 -12.17424 -12.13271 -12.03394 -11.91918 -11.64522 -11.54814 -11.23215 -11.03986 -11.01875 -10.87617 -10.82607 -10.45159 -10.41441 -10.35087 -10.30597 -10.26962 -10.11790 -9.99392 -9.88895 -9.61111 -8.96830 -8.57780 -8.29729 -6.76377 -5.75373 -3.21091 3.28078 3.32377 3.37081 3.40902 3.84561 4.44377 4.50130 4.65914 4.70363 4.82458 4.85063 4.93565 5.03691 5.11889 5.32699 5.43154 5.47058 5.49362 5.61337 5.63492 5.69476 5.76383 5.80113 5.83440 5.84083 5.92115 5.93735 5.95996 5.97648 5.98845 6.06657 6.10690 6.17735 6.23767 6.29339 6.36607 6.46230 6.49549 6.51783 6.55409 6.70202 6.77353 6.86386 7.25615 7.37980 7.66741 7.76056 8.27574 8.34944 8.92693 9.19495 9.83548 10.33903 11.28999 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.005765 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.157154 B = 4855.939343 C = 5446.226023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.249 4.249 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.895 3.105 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.696 5.696 16 C 0.519 3.481 17 O -0.557 6.557 18 C -0.091 4.091 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.123 4.123 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.039 0.961 34 H -0.003 1.003 35 H 0.252 0.748 36 H 0.402 0.598 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -0.252 -12.918 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.093 0.907 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.378 4.378 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.725 3.275 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.347 5.347 16 C 0.305 3.695 17 O -0.436 6.436 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.182 4.182 23 C -0.098 4.098 24 C -0.172 4.172 25 C -0.185 4.185 26 C -0.160 4.160 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.239 0.761 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.461 0.544 -12.828 15.376 hybrid contribution 0.801 -1.110 -0.397 1.425 sum -7.660 -0.566 -13.225 15.293 Atomic orbital electron populations 1.22114 0.96762 1.01254 1.01490 1.21816 0.92063 0.98267 0.86979 0.90658 1.21057 0.86084 0.98172 0.93391 1.43806 0.98866 1.21055 1.68289 1.20766 0.92827 0.86273 0.98216 1.18991 0.96735 1.04964 1.17145 0.91820 1.24968 0.98827 0.98946 0.96796 1.70067 1.13634 1.46353 1.24746 0.86396 0.80165 0.80877 0.80015 1.21511 1.21749 1.20328 1.46021 1.65494 1.14378 1.08786 1.20395 0.77445 0.87061 0.84560 1.90608 1.51382 1.16076 1.85504 1.21407 1.00491 0.95902 0.93409 1.22510 0.99141 0.92737 0.97261 1.22949 1.01648 0.95643 0.96519 1.22789 1.01230 0.97059 0.96877 1.23137 1.02753 0.95538 0.96796 1.22181 0.98581 0.95260 0.93782 1.23048 0.99198 0.96491 0.98416 1.22901 1.00767 0.96940 0.97918 1.22786 0.98776 0.99081 0.95367 0.93037 0.92292 0.92973 0.93154 0.93147 0.95144 0.94215 0.98438 0.93748 0.76096 0.88638 0.89267 0.89731 0.91724 0.90498 0.91555 0.91198 0.89360 0.89390 0.90211 0.91733 0.90679 0.91876 0.91138 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.12 2.10 2.88 -67.93 -0.20 1.90 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 C 0.14 2.76 5.30 -4.04 -0.02 2.74 16 5 N -0.60 -14.33 2.82 -181.12 -0.51 -14.84 16 6 C 0.16 4.04 8.98 59.85 0.54 4.58 16 7 C -0.25 -6.33 8.85 -15.06 -0.13 -6.46 16 8 H 0.06 1.53 6.23 -52.48 -0.33 1.20 16 9 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 10 N -0.90 -25.80 10.72 55.49 0.59 -25.20 16 11 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 15 N -0.70 -12.37 4.38 -53.81 -0.24 -12.60 16 16 C 0.52 9.22 6.93 -10.99 -0.08 9.14 16 17 O -0.56 -11.33 14.61 5.56 0.08 -11.25 16 18 C -0.09 -1.31 1.79 -91.77 -0.16 -1.47 16 19 C -0.10 -1.19 3.07 -89.66 -0.28 -1.46 16 20 C -0.13 -1.35 6.25 -25.92 -0.16 -1.51 16 21 C -0.14 -1.47 8.07 -25.92 -0.21 -1.68 16 22 C -0.14 -1.78 6.05 -25.78 -0.16 -1.94 16 23 C -0.08 -1.06 2.55 -89.80 -0.23 -1.29 16 24 C -0.13 -1.50 5.65 -25.82 -0.15 -1.64 16 25 C -0.15 -1.70 8.09 -25.82 -0.21 -1.91 16 26 C -0.12 -1.77 6.29 -25.91 -0.16 -1.93 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 32 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 33 H 0.04 1.06 7.31 -51.93 -0.38 0.68 16 34 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.40 7.09 4.81 -40.82 -0.20 6.89 16 37 H 0.10 1.47 7.78 -51.93 -0.40 1.06 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.88 6.75 -51.93 -0.35 0.53 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 44 H 0.09 1.22 7.97 -51.93 -0.41 0.81 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 0.90 7.57 -51.93 -0.39 0.51 16 47 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 51 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -29.21 388.22 -10.12 -39.32 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -9.53 Total: 7.73 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.34 Total: -4.92 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.15 Total: -52.64 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.21 -10.12 -39.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.787 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds