Wall clock time and date at job start Tue Mar 31 2020 09:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47217 * 2 1 4 4 C 1.52996 * 109.47101 * 120.00257 * 2 1 3 5 5 N 1.46504 * 109.47262 * 174.99700 * 4 2 1 6 6 C 1.46498 * 120.00139 * 89.99822 * 5 4 2 7 7 C 1.36933 * 120.00071 * 270.00132 * 5 4 2 8 8 H 1.08003 * 120.00439 * 21.99865 * 7 5 4 9 9 C 1.38813 * 120.00319 * 201.99900 * 7 5 4 10 10 N 1.31625 * 119.99973 * 14.22438 * 9 7 5 11 11 Si 1.86795 * 120.00303 * 194.22642 * 9 7 5 12 12 H 1.48504 * 109.47312 * 89.99863 * 11 9 7 13 13 H 1.48499 * 109.47211 * 209.99714 * 11 9 7 14 14 H 1.48503 * 109.47347 * 329.99831 * 11 9 7 15 15 N 1.46503 * 109.46860 * 240.00097 * 2 1 3 16 16 C 1.34775 * 119.99995 * 85.00060 * 15 2 1 17 17 O 1.21275 * 120.00013 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99888 * 179.97438 * 16 15 2 19 19 C 1.53005 * 109.46846 * 60.00322 * 18 16 15 20 20 C 1.53780 * 113.61087 * 179.97438 * 19 18 16 21 21 C 1.53787 * 87.08115 * 139.98042 * 20 19 18 22 22 C 1.53777 * 87.17114 * 334.52191 * 21 20 19 23 23 C 1.52998 * 109.47037 * 179.97438 * 18 16 15 24 24 C 1.53788 * 113.61221 * 159.13787 * 23 18 16 25 25 C 1.53958 * 87.01776 * 220.05027 * 24 23 18 26 26 C 1.53785 * 87.11355 * 25.36546 * 25 24 23 27 27 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46579 * 299.99979 * 1 2 3 29 29 H 1.08995 * 109.47160 * 59.99414 * 1 2 3 30 30 H 1.08994 * 109.47221 * 294.99735 * 4 2 1 31 31 H 1.09000 * 109.47567 * 54.99831 * 4 2 1 32 32 H 1.08999 * 109.47179 * 95.14532 * 6 5 4 33 33 H 1.09002 * 109.47579 * 215.14640 * 6 5 4 34 34 H 1.09002 * 109.46804 * 335.14506 * 6 5 4 35 35 H 0.96990 * 119.99984 * 180.02562 * 10 9 7 36 36 H 0.97005 * 119.99881 * 265.00084 * 15 2 1 37 37 H 1.09000 * 109.47506 * 300.00330 * 18 16 15 38 38 H 1.09002 * 112.85275 * 48.80464 * 19 18 16 39 39 H 1.08996 * 113.61996 * 25.43277 * 20 19 18 40 40 H 1.08999 * 113.61626 * 254.52646 * 20 19 18 41 41 H 1.08998 * 113.61285 * 89.11816 * 21 20 19 42 42 H 1.09003 * 113.61159 * 219.93440 * 21 20 19 43 43 H 1.08995 * 113.61147 * 140.02123 * 22 21 20 44 44 H 1.08999 * 113.61528 * 270.93015 * 22 21 20 45 45 H 1.08992 * 112.85394 * 290.33697 * 23 18 16 46 46 H 1.09002 * 113.61368 * 334.56974 * 24 23 18 47 47 H 1.08998 * 113.61380 * 105.47689 * 24 23 18 48 48 H 1.09000 * 113.53719 * 270.80879 * 25 24 23 49 49 H 1.09003 * 113.74168 * 139.94462 * 25 24 23 50 50 H 1.08999 * 113.61350 * 220.09082 * 26 25 24 51 51 H 1.08991 * 113.61639 * 89.18303 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.3344 0.2339 1.7612 7 6 4.0849 -1.9159 0.6022 8 1 3.5311 -2.5058 -0.1132 9 6 5.3897 -2.2624 0.9252 10 7 5.9686 -1.7335 1.9825 11 14 6.3242 -3.4791 -0.1404 12 1 7.0471 -2.7464 -1.2109 13 1 7.3001 -4.2224 0.6964 14 1 5.3685 -4.4358 -0.7540 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6498 -0.7285 -3.5875 19 6 1.7061 -1.8827 -3.9315 20 6 2.1318 -2.6756 -5.1785 21 6 1.7105 -3.9447 -4.4188 22 6 1.9775 -3.1644 -3.1209 23 6 2.7006 0.2544 -4.7589 24 6 3.6428 -0.1856 -5.8919 25 6 4.0686 1.2898 -6.0020 26 6 3.6544 1.4385 -4.5285 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -0.1584 2.1369 31 1 1.6054 -1.7198 1.2951 32 1 4.6183 -0.0351 2.7786 33 1 5.2314 0.3568 1.1542 34 1 3.7743 1.1689 1.7753 35 1 6.8804 -1.9753 2.2080 36 1 2.2490 -1.6318 -1.1527 37 1 3.6491 -1.1204 -3.3980 38 1 0.6579 -1.5840 -3.9412 39 1 3.2009 -2.6248 -5.3844 40 1 1.5202 -2.4693 -6.0568 41 1 0.6631 -4.2109 -4.5607 42 1 2.3855 -4.7874 -4.5684 43 1 1.2415 -3.3523 -2.3392 44 1 3.0046 -3.2468 -2.7653 45 1 1.7108 0.5520 -5.1049 46 1 4.4433 -0.8477 -5.5617 47 1 3.1212 -0.5574 -6.7738 48 1 3.4533 1.8703 -6.6893 49 1 5.1367 1.4268 -6.1713 50 1 3.1423 2.3759 -4.3114 51 1 4.4580 1.2213 -3.8250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754324276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:57 Heat of formation + Delta-G solvation = -4.966871 kcal Electronic energy + Delta-G solvation = -27987.024690 eV Core-core repulsion = 24501.211436 eV Total energy + Delta-G solvation = -3485.813254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59426 -39.58430 -38.71275 -37.88515 -35.65921 -33.26490 -32.34335 -30.89197 -28.08183 -27.39837 -27.00411 -26.18366 -25.39077 -24.38537 -23.34929 -21.72260 -21.00113 -20.70776 -19.75632 -18.80375 -17.90089 -17.14575 -16.95198 -16.65904 -16.25664 -15.81909 -15.60842 -15.41583 -15.11826 -14.93764 -14.54054 -14.36494 -13.76799 -13.48992 -13.45168 -13.34843 -13.14944 -13.12610 -12.98169 -12.86561 -12.69976 -12.56532 -12.51694 -12.27691 -12.20797 -12.07052 -12.01556 -11.87723 -11.75523 -11.40589 -11.34426 -11.22194 -11.10313 -10.61844 -10.60582 -10.31673 -9.78416 -8.75610 -7.79341 -5.26619 1.45529 1.47302 1.54546 1.87303 2.48236 2.52336 3.34518 3.48593 3.65684 3.68375 3.72194 3.86051 3.90106 4.02573 4.07049 4.10357 4.13416 4.34730 4.40308 4.42947 4.53068 4.61618 4.63999 4.74536 4.82081 4.87049 4.87777 4.89117 4.90628 4.93696 4.96791 4.98959 5.07244 5.12496 5.13876 5.16905 5.19669 5.22475 5.27598 5.38170 5.42769 5.45223 5.60999 5.65400 5.66830 5.68872 5.82481 6.32855 6.83348 7.15218 7.50710 7.87447 8.34403 9.24469 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.005765 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.157154 B = 4855.939343 C = 5446.226023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.047 0.953 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.240 4.240 8 H 0.080 0.920 9 C -0.057 4.057 10 N -0.941 5.941 11 Si 0.953 3.047 12 H -0.293 1.293 13 H -0.302 1.302 14 H -0.254 1.254 15 N -0.697 5.697 16 C 0.513 3.487 17 O -0.587 6.587 18 C -0.084 4.084 19 C -0.095 4.095 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.020 0.980 35 H 0.244 0.756 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.049 0.951 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -1.759 -15.270 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.065 0.935 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.370 4.370 8 H 0.098 0.902 9 C -0.251 4.251 10 N -0.588 5.588 11 Si 0.782 3.218 12 H -0.220 1.220 13 H -0.229 1.229 14 H -0.178 1.178 15 N -0.348 5.348 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.105 4.105 19 C -0.114 4.114 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.191 4.191 23 C -0.098 4.098 24 C -0.157 4.157 25 C -0.174 4.174 26 C -0.174 4.174 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.240 0.760 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.088 0.912 50 H 0.068 0.932 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.180 -0.980 -15.198 18.319 hybrid contribution 1.254 -0.549 0.406 1.428 sum -8.926 -1.529 -14.792 17.345 Atomic orbital electron populations 1.21990 0.93855 1.02488 1.02028 1.21629 0.94202 0.96295 0.86383 0.93511 1.21233 0.83427 0.99193 0.94675 1.44038 1.00756 1.20510 1.68155 1.20467 0.92246 0.87585 0.96289 1.19409 0.96713 1.04504 1.16412 0.90228 1.25716 1.00076 1.01264 0.98075 1.70236 1.13429 1.48474 1.26692 0.85459 0.78979 0.79233 0.78160 1.22015 1.22934 1.17796 1.46075 1.65477 1.14361 1.08866 1.21038 0.76753 0.86814 0.85387 1.90591 1.52763 1.17454 1.86042 1.21399 1.00230 0.96731 0.92189 1.22508 0.98534 0.91618 0.98722 1.22928 1.02051 0.94699 0.96191 1.22774 1.02213 0.97011 0.95062 1.23151 1.01667 0.96398 0.97847 1.22211 0.98791 0.94535 0.94248 1.22981 0.98468 0.96192 0.98102 1.22884 1.01486 0.97491 0.95577 1.22782 0.98583 0.98779 0.97235 0.91389 0.90452 0.93749 0.91804 0.92076 0.97379 0.97307 0.96188 0.94657 0.75955 0.89747 0.89116 0.89596 0.89965 0.89140 0.91052 0.91366 0.91085 0.89313 0.90217 0.89256 0.89184 0.91234 0.93196 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.48 71.98 0.68 -3.34 16 2 C 0.12 4.32 2.88 44.99 0.13 4.45 16 3 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 4 C 0.14 5.37 5.30 86.38 0.46 5.83 16 5 N -0.61 -29.38 2.82 -726.94 -2.05 -31.43 16 6 C 0.18 9.07 8.98 127.77 1.15 10.22 16 7 C -0.24 -12.18 8.85 84.03 0.74 -11.44 16 8 H 0.08 3.72 6.23 -2.91 -0.02 3.70 16 9 C -0.06 -3.07 5.08 84.86 0.43 -2.64 16 10 N -0.94 -55.30 10.72 21.65 0.23 -55.06 16 11 Si 0.95 43.31 29.58 68.60 2.03 45.34 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 15 N -0.70 -24.46 4.38 -442.54 -1.94 -26.40 16 16 C 0.51 18.23 6.93 87.66 0.61 18.84 16 17 O -0.59 -24.38 14.61 -3.01 -0.04 -24.42 16 18 C -0.08 -2.37 1.79 -11.54 -0.02 -2.39 16 19 C -0.10 -2.11 3.07 -10.17 -0.03 -2.14 16 20 C -0.12 -2.10 6.25 31.12 0.19 -1.91 16 21 C -0.13 -2.33 8.07 31.12 0.25 -2.08 16 22 C -0.15 -3.46 6.05 31.21 0.19 -3.27 16 23 C -0.08 -2.02 2.55 -10.26 -0.03 -2.05 16 24 C -0.12 -2.38 5.65 31.18 0.18 -2.20 16 25 C -0.14 -2.92 8.09 31.18 0.25 -2.67 16 26 C -0.14 -3.97 6.29 31.12 0.20 -3.77 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 31 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 32 H 0.01 0.44 7.36 -2.39 -0.02 0.42 16 33 H 0.01 0.46 7.31 -2.39 -0.02 0.44 16 34 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 35 H 0.24 14.13 8.31 -92.72 -0.77 13.36 16 36 H 0.40 13.87 4.81 -92.70 -0.45 13.42 16 37 H 0.08 2.57 7.78 -2.39 -0.02 2.56 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 1.49 6.75 -2.39 -0.02 1.48 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 44 H 0.07 1.86 7.97 -2.39 -0.02 1.84 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 1.61 7.57 -2.39 -0.02 1.59 16 47 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 51 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -64.55 388.22 4.04 -60.51 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.43 Total: 32.05 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.38 Total: -0.58 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -3.75 Total: -112.89 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.04 Total: -24.42 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.55 4.04 -60.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.542 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds