Wall clock time and date at job start Tue Mar 31 2020 09:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47164 * 2 1 4 4 C 1.53007 * 109.47038 * 119.99685 * 2 1 3 5 5 N 1.46494 * 109.47238 * 175.00021 * 4 2 1 6 6 C 1.46499 * 120.00204 * 90.00032 * 5 4 2 7 7 C 1.36938 * 119.99963 * 270.00351 * 5 4 2 8 8 H 1.07996 * 120.00186 * 21.99994 * 7 5 4 9 9 C 1.38814 * 119.99823 * 202.00903 * 7 5 4 10 10 N 1.31618 * 120.00030 * 14.15209 * 9 7 5 11 11 Si 1.86799 * 119.99900 * 194.15298 * 9 7 5 12 12 H 1.48503 * 109.46877 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47142 * 119.99578 * 11 9 7 14 14 H 1.48505 * 109.47145 * 239.99740 * 11 9 7 15 15 N 1.46497 * 109.46928 * 239.99493 * 2 1 3 16 16 C 1.34769 * 119.99815 * 85.00536 * 15 2 1 17 17 O 1.21283 * 120.00405 * 359.97438 * 16 15 2 18 18 C 1.50705 * 120.00168 * 179.97438 * 16 15 2 19 19 C 1.55930 * 115.92124 * 62.05740 * 18 16 15 20 20 C 1.56523 * 103.72476 * 160.30583 * 19 18 16 21 21 C 1.55923 * 104.82508 * 0.40431 * 20 19 18 22 22 C 1.55923 * 104.49827 * 70.00860 * 21 20 19 23 23 C 1.54582 * 104.64226 * 289.72265 * 22 21 20 24 24 C 1.56946 * 116.22781 * 181.04710 * 18 16 15 25 25 C 1.53002 * 112.02776 * 297.12463 * 24 18 16 26 26 C 1.52994 * 112.02835 * 63.64423 * 24 18 16 27 27 H 1.08996 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47167 * 300.00328 * 1 2 3 29 29 H 1.08995 * 109.46895 * 60.00274 * 1 2 3 30 30 H 1.09001 * 109.46979 * 54.99688 * 4 2 1 31 31 H 1.08996 * 109.46793 * 295.00460 * 4 2 1 32 32 H 1.09000 * 109.47411 * 95.14173 * 6 5 4 33 33 H 1.09004 * 109.46743 * 335.14510 * 6 5 4 34 34 H 1.08998 * 109.47163 * 215.14564 * 6 5 4 35 35 H 0.97003 * 120.00250 * 180.02562 * 10 9 7 36 36 H 0.97004 * 119.99896 * 264.99891 * 15 2 1 37 37 H 1.09005 * 110.39934 * 278.82821 * 19 18 16 38 38 H 1.09003 * 110.40145 * 41.23664 * 19 18 16 39 39 H 1.09001 * 110.54097 * 241.44124 * 20 19 18 40 40 H 1.09000 * 110.18534 * 119.19039 * 20 19 18 41 41 H 1.08997 * 115.91965 * 198.88989 * 21 20 19 42 42 H 1.09000 * 110.40168 * 170.93078 * 22 21 20 43 43 H 1.08994 * 110.40235 * 48.51213 * 22 21 20 44 44 H 1.09001 * 110.40065 * 241.20832 * 23 22 21 45 45 H 1.09002 * 110.40093 * 118.79373 * 23 22 21 46 46 H 1.09004 * 109.47030 * 59.99541 * 25 24 18 47 47 H 1.09001 * 109.47341 * 179.97438 * 25 24 18 48 48 H 1.09001 * 109.47116 * 300.00270 * 25 24 18 49 49 H 1.09012 * 109.46988 * 60.00000 * 26 24 18 50 50 H 1.08998 * 109.47359 * 180.02562 * 26 24 18 51 51 H 1.09002 * 109.47420 * 300.00193 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3343 0.2341 1.7614 7 6 4.0849 -1.9159 0.6025 8 1 3.5311 -2.5057 -0.1129 9 6 5.3897 -2.2623 0.9258 10 7 5.9688 -1.7323 1.9823 11 14 6.3237 -3.4806 -0.1386 12 1 5.4555 -3.9276 -1.2574 13 1 7.5406 -2.8286 -0.6857 14 1 6.7172 -4.6544 0.6815 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3570 17 8 1.8583 1.1582 -2.4117 18 6 2.6499 -0.7288 -3.5874 19 6 1.7680 -1.9070 -4.1025 20 6 2.2198 -2.0862 -5.5903 21 6 3.3263 -1.0086 -5.8038 22 6 4.5332 -1.5151 -4.9565 23 6 4.0853 -1.3299 -3.4886 24 6 2.7897 0.1444 -4.8840 25 6 1.4414 0.6951 -5.3530 26 6 3.8293 1.2546 -4.7189 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -1.7197 1.2953 31 1 1.7516 -0.1583 2.1370 32 1 4.6182 -0.0348 2.7789 33 1 3.7742 1.1691 1.7755 34 1 5.2313 0.3570 1.1544 35 1 6.8806 -1.9741 2.2080 36 1 2.2490 -1.6319 -1.1524 37 1 1.9695 -2.8116 -3.5286 38 1 0.7115 -1.6454 -4.0424 39 1 1.3838 -1.9117 -6.2676 40 1 2.6283 -3.0854 -5.7416 41 1 3.5463 -0.7503 -6.8397 42 1 5.4200 -0.9154 -5.1618 43 1 4.7285 -2.5671 -5.1643 44 1 4.7518 -0.6390 -2.9723 45 1 4.0604 -2.2908 -2.9748 46 1 1.0104 1.3174 -4.5687 47 1 1.5863 1.2934 -6.2526 48 1 0.7670 -0.1328 -5.5716 49 1 4.8014 0.8125 -4.5002 50 1 3.8920 1.8337 -5.6402 51 1 3.5350 1.9090 -3.8983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:46 Heat of formation + Delta-G solvation = -21.845929 kcal Electronic energy + Delta-G solvation = -28586.942876 eV Core-core repulsion = 25100.397691 eV Total energy + Delta-G solvation = -3486.545185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12799 -38.50908 -36.23222 -34.00911 -32.04840 -31.30225 -30.92812 -30.41074 -28.94045 -26.34856 -26.18514 -25.61555 -24.18414 -22.27696 -22.09252 -21.12044 -19.89032 -18.92398 -18.23070 -16.75001 -16.17660 -15.62227 -15.46008 -15.03769 -14.87824 -14.35625 -13.97907 -13.73039 -13.57479 -13.00954 -12.91363 -12.61806 -12.52456 -12.37612 -12.10303 -11.97537 -11.84740 -11.74506 -11.66393 -11.60152 -11.44472 -11.08051 -11.05386 -10.89313 -10.88315 -10.78622 -10.42127 -10.40403 -10.30003 -10.22597 -9.99074 -9.88895 -9.81283 -9.71413 -9.05499 -8.57924 -8.33410 -6.76207 -5.75249 -3.20759 3.18563 3.32779 3.37920 3.41797 3.81342 4.38229 4.44833 4.53842 4.60794 5.12429 5.19143 5.25544 5.30389 5.34439 5.45200 5.46609 5.53727 5.54116 5.60690 5.62632 5.65117 5.72977 5.86031 5.90335 5.95432 5.96659 5.98782 6.07547 6.08703 6.16402 6.20249 6.22617 6.25061 6.30303 6.34588 6.44419 6.46537 6.48520 6.52653 6.63837 6.69265 6.76879 6.85492 7.22624 7.37940 7.67231 7.76126 8.24356 8.34888 8.89082 9.19588 9.83718 10.33860 11.29190 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.006325 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.638251 B = 4425.821682 C = 5692.470262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.246 4.246 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.903 5.903 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.292 1.292 15 N -0.693 5.693 16 C 0.545 3.455 17 O -0.553 6.553 18 C -0.091 4.091 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.107 4.107 24 C -0.035 4.035 25 C -0.138 4.138 26 C -0.142 4.142 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.030 0.970 33 H -0.003 1.003 34 H 0.039 0.961 35 H 0.251 0.749 36 H 0.402 0.598 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.048 0.952 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 0.671 -13.058 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.376 4.376 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.343 5.343 16 C 0.331 3.669 17 O -0.432 6.432 18 C -0.094 4.094 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.035 4.035 25 C -0.195 4.195 26 C -0.199 4.199 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.238 0.762 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.025 1.457 -12.966 15.318 hybrid contribution 0.869 -1.198 -0.393 1.531 sum -7.156 0.260 -13.359 15.157 Atomic orbital electron populations 1.22117 0.96700 1.01315 1.01532 1.21837 0.92081 0.98259 0.86850 0.90604 1.21055 0.86120 0.98190 0.93333 1.43813 0.98844 1.21055 1.68281 1.20763 0.92825 0.86253 0.98212 1.19007 0.96686 1.04875 1.17037 0.91803 1.24956 0.98824 0.98916 0.96806 1.70077 1.13582 1.46290 1.24884 0.86343 0.80300 0.80814 0.80039 1.20125 1.21630 1.21868 1.45935 1.65270 1.14306 1.08745 1.19580 0.77037 0.86623 0.83670 1.90589 1.51423 1.15916 1.85247 1.22928 0.97060 0.95968 0.93415 1.22894 0.98765 0.96848 0.95997 1.22904 0.98156 0.98522 0.95756 1.23600 0.95134 0.95046 0.97893 1.22631 0.97560 1.00600 0.94808 1.22568 0.94183 1.01235 0.96521 1.22190 0.95489 0.93649 0.92214 1.21745 0.95948 1.00746 1.01067 1.21798 0.98252 0.98044 1.01786 0.92989 0.92236 0.92954 0.93106 0.93135 0.95167 0.98465 0.94200 0.93827 0.76234 0.91201 0.91640 0.91839 0.91772 0.88542 0.91703 0.91799 0.90952 0.90966 0.91098 0.93266 0.92838 0.92395 0.93282 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.09 2.88 -67.93 -0.20 1.89 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 C 0.14 2.73 5.30 -4.04 -0.02 2.71 16 5 N -0.60 -14.20 2.82 -181.12 -0.51 -14.71 16 6 C 0.16 4.02 8.98 59.85 0.54 4.56 16 7 C -0.25 -6.23 8.85 -15.06 -0.13 -6.36 16 8 H 0.06 1.53 6.22 -52.49 -0.33 1.20 16 9 C 0.00 0.09 5.08 -17.43 -0.09 0.01 16 10 N -0.90 -25.74 10.72 55.49 0.59 -25.15 16 11 Si 0.89 20.95 29.58 -169.99 -5.03 15.93 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 N -0.69 -12.29 4.49 -53.80 -0.24 -12.53 16 16 C 0.55 9.71 6.96 -10.99 -0.08 9.63 16 17 O -0.55 -11.15 13.37 5.55 0.07 -11.07 16 18 C -0.09 -1.35 0.72 -150.39 -0.11 -1.46 16 19 C -0.11 -1.35 5.34 -23.27 -0.12 -1.47 16 20 C -0.12 -1.25 5.59 -23.27 -0.13 -1.38 16 21 C -0.10 -1.13 4.51 -85.35 -0.38 -1.51 16 22 C -0.12 -1.50 5.54 -24.34 -0.13 -1.63 16 23 C -0.11 -1.66 5.20 -24.34 -0.13 -1.78 16 24 C -0.03 -0.47 0.56 -150.23 -0.08 -0.55 16 25 C -0.14 -1.78 8.50 37.16 0.32 -1.46 16 26 C -0.14 -2.02 8.43 37.15 0.31 -1.71 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 31 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.03 0.80 7.36 -51.93 -0.38 0.41 16 33 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 34 H 0.04 1.06 7.31 -51.93 -0.38 0.68 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.40 7.14 6.51 -40.82 -0.27 6.87 16 37 H 0.07 0.87 7.80 -51.93 -0.41 0.46 16 38 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 39 H 0.06 0.62 7.31 -51.93 -0.38 0.24 16 40 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.80 7.20 -51.93 -0.37 0.42 16 43 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 44 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 45 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 46 H 0.07 1.07 6.66 -51.93 -0.35 0.73 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.63 5.59 -51.93 -0.29 0.34 16 49 H 0.06 0.82 5.35 -51.92 -0.28 0.54 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.07 1.17 6.79 -51.93 -0.35 0.81 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -28.91 375.85 -8.64 -37.55 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -9.11 Total: 6.80 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.09 Total: -2.48 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.16 Total: -52.39 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.91 -8.64 -37.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.701 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds