Wall clock time and date at job start Tue Mar 31 2020 09:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46812 * 2 1 4 4 C 1.53000 * 109.47067 * 239.99934 * 2 1 3 5 5 N 1.46494 * 109.46862 * 184.99835 * 4 2 1 6 6 C 1.46500 * 120.00125 * 90.00432 * 5 4 2 7 7 C 1.36943 * 120.00093 * 269.99674 * 5 4 2 8 8 H 1.07997 * 120.00013 * 22.05555 * 7 5 4 9 9 C 1.38809 * 119.99994 * 202.05297 * 7 5 4 10 10 N 1.31623 * 120.00357 * 13.92886 * 9 7 5 11 11 Si 1.86799 * 119.99953 * 193.92161 * 9 7 5 12 12 H 1.48505 * 109.46875 * 60.00456 * 11 9 7 13 13 H 1.48495 * 109.47406 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47445 * 300.00536 * 11 9 7 15 15 N 1.46500 * 109.47295 * 119.99613 * 2 1 3 16 16 C 1.34772 * 120.00035 * 275.00234 * 15 2 1 17 17 O 1.21279 * 120.00334 * 359.97438 * 16 15 2 18 18 C 1.50699 * 120.00005 * 180.02562 * 16 15 2 19 19 C 1.55930 * 115.92062 * 62.05799 * 18 16 15 20 20 C 1.56537 * 103.72284 * 160.30465 * 19 18 16 21 21 C 1.55926 * 104.82185 * 0.40219 * 20 19 18 22 22 C 1.55935 * 104.49731 * 70.00892 * 21 20 19 23 23 C 1.54573 * 104.64082 * 289.71896 * 22 21 20 24 24 C 1.56949 * 116.22570 * 181.04877 * 18 16 15 25 25 C 1.52999 * 112.02578 * 297.11944 * 24 18 16 26 26 C 1.52995 * 112.02973 * 63.64510 * 24 18 16 27 27 H 1.08995 * 109.46751 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46670 * 300.00061 * 1 2 3 29 29 H 1.08995 * 109.47219 * 60.00068 * 1 2 3 30 30 H 1.08995 * 109.46847 * 304.99980 * 4 2 1 31 31 H 1.09006 * 109.46952 * 64.99656 * 4 2 1 32 32 H 1.08993 * 109.47712 * 95.30108 * 6 5 4 33 33 H 1.09006 * 109.47337 * 215.30223 * 6 5 4 34 34 H 1.09006 * 109.46865 * 335.29556 * 6 5 4 35 35 H 0.97001 * 120.00040 * 180.02562 * 10 9 7 36 36 H 0.97003 * 119.99782 * 94.99943 * 15 2 1 37 37 H 1.09004 * 110.40018 * 278.82232 * 19 18 16 38 38 H 1.08991 * 110.40225 * 41.24243 * 19 18 16 39 39 H 1.08992 * 110.54202 * 241.43723 * 20 19 18 40 40 H 1.08995 * 110.08214 * 119.13726 * 20 19 18 41 41 H 1.08999 * 115.91944 * 198.88340 * 21 20 19 42 42 H 1.09001 * 110.40233 * 170.92732 * 22 21 20 43 43 H 1.08997 * 110.40009 * 48.51485 * 22 21 20 44 44 H 1.09003 * 110.39973 * 241.20782 * 23 22 21 45 45 H 1.09001 * 110.40279 * 118.79501 * 23 22 21 46 46 H 1.08997 * 109.47099 * 60.00342 * 25 24 18 47 47 H 1.09001 * 109.47412 * 180.02562 * 25 24 18 48 48 H 1.09003 * 109.47351 * 300.00514 * 25 24 18 49 49 H 1.09006 * 109.47290 * 59.99634 * 26 24 18 50 50 H 1.09005 * 109.47633 * 180.02562 * 26 24 18 51 51 H 1.08997 * 109.47074 * 300.00152 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1258 -1.9919 -0.5612 7 6 4.2798 0.1649 -1.7241 8 1 3.8744 1.1565 -1.8604 9 6 5.5915 -0.1049 -2.0895 10 7 6.0051 -1.3508 -2.1851 11 14 6.7696 1.3002 -2.4460 12 1 6.9021 2.1536 -1.2379 13 1 8.0998 0.7504 -2.8113 14 1 6.2437 2.1138 -3.5714 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8591 1.1587 2.4115 18 6 2.6500 -0.7283 3.5874 19 6 4.0951 -1.3072 3.4975 20 6 4.5138 -1.4948 4.9941 21 6 3.2771 -1.0205 5.8168 22 6 2.1967 -2.1162 5.5642 23 6 1.7815 -1.9227 4.0879 24 6 2.7413 0.1326 4.8966 25 6 3.7360 1.2866 4.7563 26 6 1.3672 0.6211 5.3591 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 1.7516 -0.1583 -2.1370 32 1 4.3682 -2.7309 -1.3249 33 1 5.0387 -1.6833 -0.0516 34 1 3.4363 -2.4287 0.1613 35 1 6.9218 -1.5392 -2.4401 36 1 2.2491 -1.6317 1.1527 37 1 4.0889 -2.2653 2.9778 38 1 4.7555 -0.6034 2.9910 39 1 5.3836 -0.8810 5.2277 40 1 4.7238 -2.5453 5.1951 41 1 3.4667 -0.7700 6.8605 42 1 1.3412 -1.9652 6.2225 43 1 2.6208 -3.1093 5.7128 44 1 0.7218 -1.6765 4.0204 45 1 2.0014 -2.8207 3.5105 46 1 3.4228 1.9391 3.9414 47 1 3.7667 1.8549 5.6859 48 1 4.7274 0.8877 4.5417 49 1 0.7253 -0.2367 5.5602 50 1 1.4787 1.2128 6.2677 51 1 0.9184 1.2356 4.5786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:49 Heat of formation + Delta-G solvation = -19.723484 kcal Electronic energy + Delta-G solvation = -28316.390850 eV Core-core repulsion = 24829.937701 eV Total energy + Delta-G solvation = -3486.453149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21984 -38.58903 -36.27324 -34.04734 -32.09287 -31.28506 -31.01856 -30.49347 -29.05456 -26.40583 -26.19007 -25.60985 -24.26422 -22.33967 -22.18927 -21.02513 -20.10933 -18.98070 -18.23214 -16.77031 -16.41116 -15.64029 -15.42947 -15.04884 -14.91458 -14.43626 -14.01281 -13.72753 -13.59605 -13.25263 -12.86348 -12.65264 -12.60897 -12.40676 -12.12363 -12.00709 -11.91140 -11.82301 -11.74685 -11.56154 -11.39230 -11.29057 -11.16956 -10.94997 -10.80524 -10.64933 -10.60360 -10.47511 -10.31060 -10.17319 -10.00515 -9.91247 -9.85503 -9.80455 -9.12873 -8.60377 -8.38433 -6.73922 -5.71962 -3.17266 3.10688 3.40427 3.45408 3.48215 3.71186 4.29983 4.44223 4.51562 4.52505 5.06655 5.08860 5.16168 5.19451 5.33953 5.38205 5.42128 5.44230 5.48098 5.53890 5.58066 5.60771 5.69115 5.82669 5.83778 5.89445 5.91441 5.97491 5.98275 6.00821 6.09999 6.11166 6.19026 6.21074 6.22094 6.25667 6.33987 6.37907 6.47820 6.53901 6.58295 6.62055 6.65799 6.83329 7.16486 7.32014 7.67712 7.81552 8.11185 8.39048 8.80383 9.23765 9.86697 10.34410 11.32689 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.004887 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.135403 B = 5728.509439 C = 6334.671625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.169 3.831 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.909 5.909 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.701 5.701 16 C 0.544 3.456 17 O -0.545 6.545 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.035 4.035 25 C -0.141 4.141 26 C -0.140 4.140 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.041 0.959 34 H -0.009 1.009 35 H 0.252 0.748 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -3.137 15.258 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.101 0.899 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.025 3.975 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.554 5.554 11 Si 0.732 3.268 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.351 5.351 16 C 0.330 3.670 17 O -0.423 6.423 18 C -0.095 4.095 19 C -0.144 4.144 20 C -0.155 4.155 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.035 4.035 25 C -0.198 4.198 26 C -0.198 4.198 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.009 0.991 35 H 0.062 0.938 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.409 -2.401 15.194 17.531 hybrid contribution 0.914 0.200 -0.321 0.989 sum -7.495 -2.201 14.873 16.800 Atomic orbital electron populations 1.22119 0.96701 1.01162 1.01664 1.21884 0.91997 0.98895 0.86319 0.89900 1.21048 0.85895 0.97456 0.94149 1.43788 0.99032 1.22745 1.66338 1.20797 0.94012 0.89044 0.93688 1.19113 0.93816 0.89825 1.35321 0.91579 1.24944 0.98668 0.96003 0.99875 1.70051 1.16691 1.16687 1.51979 0.86378 0.80421 0.81802 0.78231 1.21148 1.21677 1.20927 1.46023 1.65999 1.13860 1.09242 1.19599 0.77122 0.86710 0.83585 1.90609 1.50801 1.15802 1.85069 1.22956 0.97052 0.96044 0.93486 1.22896 0.94091 1.00892 0.96524 1.22929 0.97445 1.00650 0.94431 1.23607 0.95113 0.94982 0.97992 1.22594 0.98474 0.98477 0.95816 1.22564 0.99106 0.96642 0.96226 1.22196 0.95638 0.93722 0.91957 1.21763 0.98427 0.97670 1.01953 1.21794 0.95856 1.00987 1.01114 0.93159 0.92973 0.92065 0.94256 0.92018 0.95184 0.94059 0.99061 0.93788 0.76922 0.91152 0.90895 0.91643 0.91768 0.88478 0.91774 0.91672 0.91674 0.91372 0.90921 0.93242 0.92507 0.92707 0.93139 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.08 2.88 -67.93 -0.20 1.88 16 3 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 4 C 0.14 2.79 5.29 -4.04 -0.02 2.77 16 5 N -0.60 -14.34 2.78 -181.12 -0.50 -14.84 16 6 C 0.17 3.92 8.52 59.85 0.51 4.43 16 7 C -0.25 -6.84 9.66 -15.06 -0.15 -6.98 16 8 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 9 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 10 N -0.91 -26.16 10.70 55.49 0.59 -25.57 16 11 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 N -0.70 -11.82 4.52 -53.80 -0.24 -12.07 16 16 C 0.54 9.35 6.96 -10.99 -0.08 9.27 16 17 O -0.54 -10.94 13.37 5.56 0.07 -10.87 16 18 C -0.09 -1.27 0.72 -150.39 -0.11 -1.37 16 19 C -0.11 -1.44 5.34 -23.26 -0.12 -1.56 16 20 C -0.12 -1.29 5.59 -23.26 -0.13 -1.42 16 21 C -0.10 -1.02 4.51 -85.35 -0.38 -1.41 16 22 C -0.12 -1.11 5.54 -24.34 -0.13 -1.25 16 23 C -0.11 -1.21 5.20 -24.34 -0.13 -1.33 16 24 C -0.03 -0.44 0.56 -150.23 -0.08 -0.52 16 25 C -0.14 -1.96 8.50 37.16 0.32 -1.64 16 26 C -0.14 -1.73 8.43 37.16 0.31 -1.41 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 32 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 33 H 0.04 1.05 7.31 -51.93 -0.38 0.67 16 34 H -0.01 -0.17 5.76 -51.93 -0.30 -0.47 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.40 6.27 6.21 -40.82 -0.25 6.02 16 37 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 38 H 0.07 1.17 7.65 -51.93 -0.40 0.77 16 39 H 0.06 0.72 7.31 -51.93 -0.38 0.34 16 40 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 43 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 44 H 0.06 0.74 7.55 -51.93 -0.39 0.35 16 45 H 0.07 0.72 7.80 -51.93 -0.41 0.31 16 46 H 0.07 1.21 6.65 -51.93 -0.35 0.87 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.78 5.59 -51.93 -0.29 0.49 16 49 H 0.05 0.60 5.35 -51.93 -0.28 0.33 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -30.12 375.25 -8.64 -38.77 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -9.06 Total: 4.30 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.13 Total: -2.52 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.15 Total: -52.48 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.12 -8.64 -38.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.043 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds