Wall clock time and date at job start Tue Mar 31 2020 09:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46812 * 2 1 4 4 C 1.53000 * 109.47067 * 239.99934 * 2 1 3 5 5 N 1.46494 * 109.46862 * 184.99835 * 4 2 1 6 6 C 1.46500 * 120.00125 * 90.00432 * 5 4 2 7 7 C 1.36943 * 120.00093 * 269.99674 * 5 4 2 8 8 H 1.07997 * 120.00013 * 22.05555 * 7 5 4 9 9 C 1.38809 * 119.99994 * 202.05297 * 7 5 4 10 10 N 1.31623 * 120.00357 * 13.92886 * 9 7 5 11 11 Si 1.86799 * 119.99953 * 193.92161 * 9 7 5 12 12 H 1.48505 * 109.46875 * 60.00456 * 11 9 7 13 13 H 1.48495 * 109.47406 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47445 * 300.00536 * 11 9 7 15 15 N 1.46500 * 109.47295 * 119.99613 * 2 1 3 16 16 C 1.34772 * 120.00035 * 275.00234 * 15 2 1 17 17 O 1.21279 * 120.00334 * 359.97438 * 16 15 2 18 18 C 1.50699 * 120.00005 * 180.02562 * 16 15 2 19 19 C 1.55930 * 115.92062 * 62.05799 * 18 16 15 20 20 C 1.56537 * 103.72284 * 160.30465 * 19 18 16 21 21 C 1.55926 * 104.82185 * 0.40219 * 20 19 18 22 22 C 1.55935 * 104.49731 * 70.00892 * 21 20 19 23 23 C 1.54573 * 104.64082 * 289.71896 * 22 21 20 24 24 C 1.56949 * 116.22570 * 181.04877 * 18 16 15 25 25 C 1.52999 * 112.02578 * 297.11944 * 24 18 16 26 26 C 1.52995 * 112.02973 * 63.64510 * 24 18 16 27 27 H 1.08995 * 109.46751 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46670 * 300.00061 * 1 2 3 29 29 H 1.08995 * 109.47219 * 60.00068 * 1 2 3 30 30 H 1.08995 * 109.46847 * 304.99980 * 4 2 1 31 31 H 1.09006 * 109.46952 * 64.99656 * 4 2 1 32 32 H 1.08993 * 109.47712 * 95.30108 * 6 5 4 33 33 H 1.09006 * 109.47337 * 215.30223 * 6 5 4 34 34 H 1.09006 * 109.46865 * 335.29556 * 6 5 4 35 35 H 0.97001 * 120.00040 * 180.02562 * 10 9 7 36 36 H 0.97003 * 119.99782 * 94.99943 * 15 2 1 37 37 H 1.09004 * 110.40018 * 278.82232 * 19 18 16 38 38 H 1.08991 * 110.40225 * 41.24243 * 19 18 16 39 39 H 1.08992 * 110.54202 * 241.43723 * 20 19 18 40 40 H 1.08995 * 110.08214 * 119.13726 * 20 19 18 41 41 H 1.08999 * 115.91944 * 198.88340 * 21 20 19 42 42 H 1.09001 * 110.40233 * 170.92732 * 22 21 20 43 43 H 1.08997 * 110.40009 * 48.51485 * 22 21 20 44 44 H 1.09003 * 110.39973 * 241.20782 * 23 22 21 45 45 H 1.09001 * 110.40279 * 118.79501 * 23 22 21 46 46 H 1.08997 * 109.47099 * 60.00342 * 25 24 18 47 47 H 1.09001 * 109.47412 * 180.02562 * 25 24 18 48 48 H 1.09003 * 109.47351 * 300.00514 * 25 24 18 49 49 H 1.09006 * 109.47290 * 59.99634 * 26 24 18 50 50 H 1.09005 * 109.47633 * 180.02562 * 26 24 18 51 51 H 1.08997 * 109.47074 * 300.00152 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1258 -1.9919 -0.5612 7 6 4.2798 0.1649 -1.7241 8 1 3.8744 1.1565 -1.8604 9 6 5.5915 -0.1049 -2.0895 10 7 6.0051 -1.3508 -2.1851 11 14 6.7696 1.3002 -2.4460 12 1 6.9021 2.1536 -1.2379 13 1 8.0998 0.7504 -2.8113 14 1 6.2437 2.1138 -3.5714 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8591 1.1587 2.4115 18 6 2.6500 -0.7283 3.5874 19 6 4.0951 -1.3072 3.4975 20 6 4.5138 -1.4948 4.9941 21 6 3.2771 -1.0205 5.8168 22 6 2.1967 -2.1162 5.5642 23 6 1.7815 -1.9227 4.0879 24 6 2.7413 0.1326 4.8966 25 6 3.7360 1.2866 4.7563 26 6 1.3672 0.6211 5.3591 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -1.7198 -1.2951 31 1 1.7516 -0.1583 -2.1370 32 1 4.3682 -2.7309 -1.3249 33 1 5.0387 -1.6833 -0.0516 34 1 3.4363 -2.4287 0.1613 35 1 6.9218 -1.5392 -2.4401 36 1 2.2491 -1.6317 1.1527 37 1 4.0889 -2.2653 2.9778 38 1 4.7555 -0.6034 2.9910 39 1 5.3836 -0.8810 5.2277 40 1 4.7238 -2.5453 5.1951 41 1 3.4667 -0.7700 6.8605 42 1 1.3412 -1.9652 6.2225 43 1 2.6208 -3.1093 5.7128 44 1 0.7218 -1.6765 4.0204 45 1 2.0014 -2.8207 3.5105 46 1 3.4228 1.9391 3.9414 47 1 3.7667 1.8549 5.6859 48 1 4.7274 0.8877 4.5417 49 1 0.7253 -0.2367 5.5602 50 1 1.4787 1.2128 6.2677 51 1 0.9184 1.2356 4.5786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754327092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:48 Heat of formation + Delta-G solvation = -36.352636 kcal Electronic energy + Delta-G solvation = -28317.111944 eV Core-core repulsion = 24829.937701 eV Total energy + Delta-G solvation = -3487.174243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26036 -39.94843 -37.95595 -35.77137 -33.38508 -32.77253 -32.05607 -31.92097 -30.15170 -28.02501 -27.44255 -27.42985 -25.31099 -23.84003 -23.07522 -22.64956 -21.56662 -20.04439 -19.36587 -18.74944 -17.54508 -16.98614 -16.89267 -16.54950 -16.07005 -15.68355 -15.61839 -15.24572 -15.11966 -14.67090 -14.48287 -13.81296 -13.60678 -13.58914 -13.52924 -13.37843 -13.22300 -12.98742 -12.82374 -12.78167 -12.76463 -12.74919 -12.55569 -12.47775 -12.31489 -12.07259 -12.03348 -11.88026 -11.79956 -11.75800 -11.47562 -11.30140 -10.82622 -10.78244 -10.67141 -10.46565 -9.88987 -8.75164 -7.84140 -5.30543 1.40768 1.43387 1.49364 1.77196 2.39496 2.48485 3.27917 3.30943 3.50912 3.56783 3.67929 3.92397 4.17014 4.18830 4.20810 4.27471 4.37184 4.46504 4.49805 4.52110 4.53007 4.56942 4.60937 4.68068 4.74099 4.77561 4.85492 4.91955 4.94684 4.98654 5.01653 5.07895 5.09827 5.15392 5.19019 5.19835 5.24840 5.28184 5.29071 5.39696 5.41682 5.49897 5.54937 5.59453 5.60982 5.71514 5.77838 6.31245 6.74681 7.15119 7.44739 7.87258 8.27887 9.17358 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.004887 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.135403 B = 5728.509439 C = 6334.671625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.125 3.875 3 H 0.041 0.959 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.186 3.814 7 C -0.258 4.258 8 H 0.059 0.941 9 C -0.046 4.046 10 N -0.932 5.932 11 Si 0.955 3.045 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.275 1.275 15 N -0.699 5.699 16 C 0.536 3.464 17 O -0.581 6.581 18 C -0.099 4.099 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.085 4.085 22 C -0.110 4.110 23 C -0.103 4.103 24 C -0.042 4.042 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.009 0.991 34 H 0.033 0.967 35 H 0.248 0.752 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -4.709 17.318 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.060 0.940 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.041 3.959 7 C -0.388 4.388 8 H 0.076 0.924 9 C -0.241 4.241 10 N -0.579 5.579 11 Si 0.785 3.215 12 H -0.217 1.217 13 H -0.215 1.215 14 H -0.201 1.201 15 N -0.350 5.350 16 C 0.324 3.676 17 O -0.461 6.461 18 C -0.102 4.102 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.042 4.042 25 C -0.196 4.196 26 C -0.192 4.192 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.620 -3.980 17.253 20.151 hybrid contribution 1.240 0.751 -0.992 1.756 sum -8.380 -3.229 16.261 18.577 Atomic orbital electron populations 1.21988 0.93694 1.02738 1.01896 1.21600 0.94177 0.96379 0.86072 0.94023 1.21208 0.83375 0.99025 0.94763 1.43976 1.00819 1.22238 1.66311 1.20521 0.93840 0.88158 0.93369 1.19323 0.94522 0.90408 1.34549 0.92366 1.25558 0.99993 0.97888 1.00655 1.70185 1.16560 1.17951 1.53210 0.85521 0.78701 0.79464 0.77858 1.21710 1.21542 1.20102 1.46004 1.65985 1.14001 1.09002 1.20294 0.76320 0.86459 0.84546 1.90593 1.52299 1.17491 1.85721 1.22952 0.97613 0.97361 0.92274 1.22880 0.93299 0.99859 0.98448 1.22929 0.97791 1.01950 0.92272 1.23631 0.94655 0.93640 0.98369 1.22604 0.98717 0.98967 0.94402 1.22590 0.98432 0.95403 0.97700 1.22285 0.95653 0.93950 0.92316 1.21713 0.98580 0.97977 1.01289 1.21735 0.95579 1.01324 1.00520 0.90806 0.93828 0.90773 0.91562 0.92262 0.97698 0.97185 0.94859 0.94285 0.76249 0.90815 0.94661 0.91861 0.89725 0.86189 0.90218 0.89821 0.91726 0.90445 0.94769 0.91471 0.92945 0.90981 0.91741 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.48 71.98 0.68 -3.36 16 2 C 0.13 4.48 2.88 44.99 0.13 4.61 16 3 H 0.04 1.84 7.58 -2.39 -0.02 1.82 16 4 C 0.14 5.50 5.29 86.38 0.46 5.95 16 5 N -0.61 -29.66 2.78 -726.94 -2.02 -31.68 16 6 C 0.19 8.68 8.52 127.77 1.09 9.77 16 7 C -0.26 -14.33 9.66 84.03 0.81 -13.52 16 8 H 0.06 3.27 7.87 -2.91 -0.02 3.24 16 9 C -0.05 -2.58 5.08 84.86 0.43 -2.15 16 10 N -0.93 -54.81 10.70 21.65 0.23 -54.58 16 11 Si 0.96 46.55 29.58 68.60 2.03 48.58 16 12 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 N -0.70 -23.51 4.52 -442.53 -2.00 -25.51 16 16 C 0.54 18.78 6.96 87.66 0.61 19.39 16 17 O -0.58 -24.47 13.37 -3.03 -0.04 -24.51 16 18 C -0.10 -2.64 0.72 -49.52 -0.04 -2.68 16 19 C -0.11 -2.85 5.34 32.84 0.18 -2.67 16 20 C -0.11 -2.21 5.59 32.84 0.18 -2.02 16 21 C -0.08 -1.47 4.51 -7.38 -0.03 -1.50 16 22 C -0.11 -1.62 5.54 32.15 0.18 -1.44 16 23 C -0.10 -2.03 5.20 32.14 0.17 -1.86 16 24 C -0.04 -1.00 0.56 -49.41 -0.03 -1.03 16 25 C -0.14 -3.90 8.50 71.98 0.61 -3.29 16 26 C -0.13 -3.11 8.43 71.98 0.61 -2.51 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 32 H 0.00 0.25 7.35 -2.39 -0.02 0.23 16 33 H 0.01 0.50 7.31 -2.38 -0.02 0.48 16 34 H 0.03 1.24 5.76 -2.38 -0.01 1.22 16 35 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.40 12.25 6.21 -92.71 -0.58 11.68 16 37 H 0.07 1.86 7.80 -2.38 -0.02 1.84 16 38 H 0.03 1.18 7.65 -2.39 -0.02 1.16 16 39 H 0.06 1.28 7.31 -2.39 -0.02 1.26 16 40 H 0.08 1.36 7.83 -2.39 -0.02 1.34 16 41 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.00 7.20 -2.39 -0.02 0.98 16 43 H 0.08 1.01 7.83 -2.39 -0.02 0.99 16 44 H 0.06 1.29 7.55 -2.39 -0.02 1.27 16 45 H 0.08 1.38 7.80 -2.39 -0.02 1.36 16 46 H 0.03 1.20 6.65 -2.39 -0.02 1.19 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.05 1.47 5.59 -2.39 -0.01 1.46 16 49 H 0.07 1.39 5.35 -2.38 -0.01 1.38 16 50 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.04 1.08 6.79 -2.39 -0.02 1.06 16 Total: -1.00 -68.38 375.25 4.56 -63.82 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.33 Total: 22.20 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.04 Total: 1.68 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -3.79 Total: -111.77 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.04 Total: -24.51 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -68.38 4.56 -63.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.464 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds