Wall clock time and date at job start Tue Mar 31 2020 10:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47072 * 269.99543 * 3 2 1 5 5 H 1.48498 * 109.47301 * 29.99350 * 3 2 1 6 6 H 1.48504 * 109.47146 * 150.00095 * 3 2 1 7 7 C 1.37878 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99884 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99633 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46703 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46605 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.39362 * 111.00132 * 179.97438 * 12 11 10 14 14 C 1.39545 * 121.09940 * 60.00075 * 13 12 11 15 15 Cl 1.73601 * 120.13736 * 359.97438 * 14 13 12 16 16 N 1.31841 * 119.73471 * 179.97438 * 14 13 12 17 17 N 1.28294 * 122.29579 * 0.02562 * 16 14 13 18 18 C 1.32084 * 122.39884 * 359.97438 * 17 16 14 19 19 Cl 1.73604 * 120.04486 * 179.72717 * 18 17 16 20 20 C 1.38631 * 119.91277 * 0.02562 * 18 17 16 21 21 Cl 1.73606 * 121.07237 * 179.97438 * 20 18 17 22 22 H 0.97001 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47314 * 60.00083 * 9 7 2 24 24 H 1.08999 * 109.47066 * 299.99671 * 9 7 2 25 25 H 1.08997 * 109.47262 * 59.99936 * 10 9 7 26 26 H 1.08999 * 109.46997 * 299.99598 * 10 9 7 27 27 H 1.08997 * 109.47537 * 59.99891 * 11 10 9 28 28 H 1.08999 * 109.46941 * 299.99420 * 11 10 9 29 29 H 1.00903 * 110.99661 * 56.04116 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0022 12 7 6.0413 -4.0215 0.0027 13 6 7.4344 -4.0587 0.0033 14 6 8.1704 -3.4805 1.0382 15 17 7.3552 -2.6967 2.3554 16 7 9.4876 -3.5318 1.0118 17 7 10.1325 -4.0996 0.0592 18 6 9.5245 -4.6740 -0.9631 19 17 10.4582 -5.4188 -2.2230 20 6 8.1399 -4.6758 -1.0319 21 17 7.3098 -5.4212 -2.3619 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6800 0.8911 24 1 3.8752 -0.6804 -0.8889 25 1 3.6586 -3.1502 -0.8892 26 1 3.6579 -3.1505 0.8908 27 1 5.9142 -2.1230 0.8926 28 1 5.9155 -2.1224 -0.8873 29 1 5.6663 -4.5379 -0.7789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:23 Heat of formation + Delta-G solvation = 36.218227 kcal Electronic energy + Delta-G solvation = -18070.938484 eV Core-core repulsion = 14721.305245 eV Total energy + Delta-G solvation = -3349.633238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 308.990 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -41.77625 -38.17744 -37.71275 -37.23516 -36.90220 -34.23773 -32.66510 -32.25241 -30.67161 -27.16213 -25.35289 -24.24901 -22.62838 -20.50931 -19.20593 -18.08246 -17.48886 -16.87053 -16.26015 -15.99631 -15.45246 -14.85432 -14.69631 -14.08288 -13.54666 -13.18742 -12.79166 -12.73207 -12.55764 -12.28458 -12.07192 -11.91608 -11.69142 -11.57702 -11.14452 -11.08417 -10.67069 -10.36916 -10.12811 -9.97615 -9.82837 -9.76722 -9.31005 -8.91798 -8.62366 -6.12442 -4.11697 -0.16465 -0.01712 0.83030 0.99271 1.48198 2.56237 3.02450 3.24094 3.32720 3.34402 3.53209 3.70651 4.12947 4.37205 4.52634 4.61984 5.12493 5.18367 5.22298 5.71779 5.95460 6.20927 6.44741 6.53980 6.69596 7.12287 7.24738 7.67890 7.81930 8.43532 8.91682 9.49134 11.00695 Molecular weight = 308.99amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.003669 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.066592 B = 7628.873963 C = 8391.892337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.034 3.966 12 N -0.605 5.605 13 C 0.172 3.828 14 C 0.101 3.899 15 Cl 0.037 6.963 16 N -0.182 5.182 17 N -0.227 5.227 18 C 0.151 3.849 19 Cl 0.020 6.980 20 C -0.102 4.102 21 Cl 0.001 6.999 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.509 -10.712 -2.719 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.138 4.138 11 C -0.090 4.090 12 N -0.229 5.229 13 C 0.054 3.946 14 C -0.075 4.075 15 Cl 0.066 6.934 16 N -0.026 5.026 17 N -0.074 5.074 18 C -0.020 4.020 19 Cl 0.048 6.952 20 C -0.146 4.146 21 Cl 0.030 6.970 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 20.505 -10.329 -1.447 23.005 hybrid contribution -0.929 0.505 -1.610 1.926 sum 19.576 -9.823 -3.057 22.115 Atomic orbital electron populations 1.69908 1.06287 1.26988 1.50728 1.25028 0.94746 0.99172 0.94477 0.86805 0.80405 0.83693 0.78546 1.20279 1.21263 1.18967 1.21058 0.89137 0.94576 1.51274 0.90882 1.19529 0.97528 0.91321 0.96510 1.21528 0.88890 1.00925 1.02461 1.22971 0.99629 0.83075 1.03303 1.57364 1.00392 1.17604 1.47574 1.19537 0.92264 0.92671 0.90121 1.23381 0.91370 1.00289 0.92444 1.98460 1.74801 1.77020 1.43151 1.72862 1.04985 1.09400 1.15393 1.73131 1.28717 1.07860 0.97703 1.23376 0.88292 0.96622 0.93748 1.98456 1.72756 1.78310 1.45678 1.21978 0.91839 1.07406 0.93331 1.98436 1.76938 1.79440 1.42182 0.92637 0.96296 0.96987 0.92270 0.91107 0.88455 0.92987 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.96 55.43 0.77 -26.29 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 15 7 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 15 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 15 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 15 10 C -0.10 -1.74 5.41 -26.73 -0.14 -1.88 15 11 C 0.03 0.48 5.26 -3.82 -0.02 0.46 15 12 N -0.61 -7.39 6.35 -58.07 -0.37 -7.76 15 13 C 0.17 2.06 5.82 -83.42 -0.49 1.58 15 14 C 0.10 1.29 7.21 -17.06 -0.12 1.17 15 15 Cl 0.04 0.46 25.73 -51.86 -1.33 -0.87 15 16 N -0.18 -2.44 11.47 33.01 0.38 -2.06 15 17 N -0.23 -2.93 11.48 32.87 0.38 -2.56 15 18 C 0.15 1.71 7.36 -17.30 -0.13 1.58 15 19 Cl 0.02 0.18 28.24 -51.86 -1.46 -1.28 15 20 C -0.10 -1.13 6.40 -38.91 -0.25 -1.38 15 21 Cl 0.00 0.01 26.57 -51.86 -1.38 -1.37 15 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 23 H 0.02 0.42 7.20 -51.93 -0.37 0.04 15 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.10 1.38 4.82 -51.93 -0.25 1.13 15 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 29 H 0.37 4.09 6.96 -39.29 -0.27 3.82 15 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -28.76 295.94 -7.06 -35.83 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -2.14 Total: -2.86 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.69 Total: -11.56 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 1.16 Total: -38.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -4.18 Total: -3.52 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.76 -7.06 -35.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds