Wall clock time and date at job start Tue Mar 31 2020 11:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36614 * 120.88685 * 338.10430 * 3 2 1 5 5 N 1.35104 * 121.08816 * 180.22873 * 4 3 2 6 6 H 0.97003 * 118.48949 * 179.75634 * 5 4 3 7 7 C 1.36112 * 123.01724 * 359.48871 * 5 4 3 8 8 C 1.34619 * 121.60922 * 0.25197 * 7 5 4 9 9 Br 1.89105 * 120.67994 * 180.02562 * 8 7 5 10 10 C 1.46948 * 118.63778 * 0.02562 * 8 7 5 11 11 N 1.31805 * 121.29437 * 179.97438 * 10 8 7 12 12 C 1.46493 * 120.00017 * 173.95654 * 11 10 8 13 13 C 1.53002 * 109.47214 * 185.07121 * 12 11 10 14 14 C 1.53000 * 109.47272 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47360 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00082 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46864 * 60.00472 * 19 17 15 21 21 H 1.48497 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47347 * 300.00805 * 19 17 15 23 23 H 1.08004 * 119.45569 * 359.97438 * 4 3 2 24 24 H 1.07995 * 119.19826 * 180.27798 * 7 5 4 25 25 H 1.08995 * 109.47474 * 305.07371 * 12 11 10 26 26 H 1.09003 * 109.47435 * 65.07581 * 12 11 10 27 27 H 1.09003 * 109.47388 * 299.99917 * 13 12 11 28 28 H 1.09001 * 109.47379 * 60.00271 * 13 12 11 29 29 H 1.09009 * 109.47207 * 299.99913 * 14 13 12 30 30 H 1.08995 * 109.47432 * 59.99695 * 14 13 12 31 31 H 0.96999 * 120.00122 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -1.0869 0.4372 5 7 4.6208 -1.0890 0.4433 6 1 5.0809 -1.8800 0.7650 7 6 5.3660 -0.0341 0.0137 8 6 4.7930 1.0942 -0.4455 9 35 5.8539 2.5437 -1.0366 10 6 3.3261 1.1762 -0.4781 11 7 2.7104 2.2558 -0.9170 12 6 1.2526 2.2596 -1.0620 13 6 0.8073 3.5758 -1.7026 14 6 -0.7152 3.5801 -1.8534 15 6 -1.1538 4.8762 -2.4850 16 1 -0.4200 5.6224 -2.7517 17 6 -2.4918 5.1094 -2.7223 18 7 -3.3855 4.2009 -2.3971 19 14 -3.0356 6.7162 -3.5045 20 1 -2.4047 6.8541 -4.8418 21 1 -4.5133 6.7204 -3.6510 22 1 -2.6209 7.8519 -2.6421 23 1 2.7358 -1.9578 0.7876 24 1 6.4434 -0.1040 0.0416 25 1 0.9482 1.4262 -1.6949 26 1 0.7895 2.1585 -0.0804 27 1 1.1117 4.4093 -1.0695 28 1 1.2703 3.6771 -2.6842 29 1 -1.0200 2.7466 -2.4863 30 1 -1.1779 3.4790 -0.8718 31 1 -4.3268 4.3651 -2.5637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430616.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:32 Heat of formation + Delta-G solvation = 83.252675 kcal Electronic energy + Delta-G solvation = -16497.038758 eV Core-core repulsion = 13632.574180 eV Total energy + Delta-G solvation = -2864.464578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 309.017 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53229 -37.36111 -35.44506 -33.85280 -32.90344 -31.95904 -30.44299 -29.34874 -26.63472 -24.55448 -23.27674 -21.44880 -20.14659 -19.94810 -17.62246 -17.01444 -16.27812 -15.80167 -15.25841 -14.52338 -14.34688 -14.30689 -13.49034 -13.23663 -13.13064 -12.74770 -12.27801 -12.15854 -12.12644 -11.56192 -11.43248 -10.80462 -10.63913 -10.46702 -10.39324 -10.19602 -9.58054 -9.45779 -9.22412 -9.00376 -8.78045 -8.21298 -7.47390 -5.86052 -3.88158 0.60206 1.14919 1.48305 2.46006 2.86449 2.94071 3.42878 3.45771 3.49461 3.67291 3.84350 4.06276 4.24433 4.56099 4.64995 5.08227 5.17553 5.33593 5.48773 5.82518 5.90333 6.12770 6.35303 6.47533 6.60484 6.90272 7.07223 7.32368 7.67134 7.83547 7.99194 8.10432 8.15316 8.58566 9.18931 9.74750 11.25400 Molecular weight = 309.02amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003792 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.593922 B = 7381.916342 C = 8868.380950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.255 3.745 3 C -0.149 4.149 4 C 0.188 3.812 5 N -0.599 5.599 6 H 0.425 0.575 7 C 0.130 3.870 8 C -0.133 4.133 9 Br -0.008 7.008 10 C 0.222 3.778 11 N -0.502 5.502 12 C 0.038 3.962 13 C -0.092 4.092 14 C 0.024 3.976 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.172 0.828 24 H 0.173 0.827 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.352 -15.928 8.213 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.060 4.060 3 C -0.165 4.165 4 C 0.054 3.946 5 N -0.207 5.207 6 H 0.261 0.739 7 C 0.002 3.998 8 C -0.220 4.220 9 Br 0.077 6.923 10 C 0.036 3.964 11 N -0.212 5.212 12 C -0.091 4.091 13 C -0.130 4.130 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.189 0.811 24 H 0.190 0.810 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 24.812 -14.356 7.616 29.660 hybrid contribution -0.563 -0.445 0.067 0.720 sum 24.249 -14.801 7.683 29.430 Atomic orbital electron populations 1.81481 1.11278 1.06496 1.08356 1.24751 0.91808 0.94729 0.94720 1.16956 0.85774 0.97805 1.15940 1.21494 0.83109 0.97732 0.92283 1.40641 1.04752 1.17248 1.58032 0.73861 1.21356 0.97059 0.86365 0.94981 1.21909 0.92249 0.95500 1.12376 1.96722 1.64343 1.42748 1.88471 1.20674 0.90624 0.88810 0.96332 1.72909 1.12205 1.21509 1.14597 1.22640 0.85722 1.00817 0.99915 1.21462 0.99060 0.93372 0.99109 1.19057 0.88479 0.96962 0.96883 1.21221 0.92101 1.02274 1.39897 0.92656 1.25037 0.96847 0.96724 0.95938 1.69983 1.01280 1.34157 1.48155 0.86655 0.77273 0.84146 0.79905 1.20243 1.21355 1.20248 0.81084 0.80990 0.92431 0.92215 0.92952 0.92975 0.96881 0.96828 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.54 17.38 41.84 0.73 -6.81 16 2 C 0.25 3.95 11.03 -22.47 -0.25 3.70 16 3 C -0.15 -1.74 5.89 -104.64 -0.62 -2.36 16 4 C 0.19 1.02 10.86 -16.70 -0.18 0.84 16 5 N -0.60 -1.59 5.19 -12.83 -0.07 -1.65 16 6 H 0.43 -0.80 8.87 -40.82 -0.36 -1.16 16 7 C 0.13 0.64 10.86 -16.93 -0.18 0.46 16 8 C -0.13 -1.36 6.41 -37.34 -0.24 -1.60 16 9 Br -0.01 -0.08 33.41 -68.01 -2.27 -2.36 16 10 C 0.22 3.17 6.99 -80.43 -0.56 2.60 16 11 N -0.50 -9.39 10.18 -55.54 -0.57 -9.96 16 12 C 0.04 0.82 4.17 -4.04 -0.02 0.80 16 13 C -0.09 -2.27 5.48 -26.73 -0.15 -2.42 16 14 C 0.02 0.70 4.97 -27.88 -0.14 0.56 16 15 C -0.52 -16.03 9.11 -34.44 -0.31 -16.34 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -28.96 13.29 55.43 0.74 -28.22 16 19 Si 0.89 23.12 29.54 -169.99 -5.02 18.10 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H 0.17 0.30 8.06 -52.48 -0.42 -0.13 16 24 H 0.17 0.21 8.06 -52.49 -0.42 -0.21 16 25 H 0.06 1.27 6.61 -51.93 -0.34 0.93 16 26 H 0.06 1.33 6.27 -51.93 -0.33 1.01 16 27 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -39.94 298.00 -7.82 -47.76 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: -3.11 Total: -9.20 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.74 Total: -12.15 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.83 Total: -46.65 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -39.94 -7.82 -47.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430616.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.017 kcal (2) G-P(sol) polarization free energy of solvation -39.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds