Wall clock time and date at job start Tue Mar 31 2020 09:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.46994 * 2 1 4 4 C 1.53000 * 109.46747 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46555 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47531 * 304.99901 * 5 4 3 7 7 C 1.53002 * 109.47390 * 64.99876 * 5 4 3 8 8 C 1.52998 * 109.47465 * 186.43917 * 7 5 4 9 9 C 1.53003 * 109.47002 * 185.00026 * 5 4 3 10 10 N 1.46903 * 109.47068 * 173.35017 * 9 5 4 11 11 C 1.47953 * 110.99899 * 290.81632 * 10 9 5 12 12 C 1.55149 * 104.97548 * 213.86764 * 11 10 9 13 13 C 1.53862 * 101.48120 * 35.71277 * 12 11 10 14 14 C 1.52579 * 115.89208 * 95.40429 * 13 12 11 15 15 N 1.48227 * 85.73069 * 94.84294 * 14 13 12 16 16 C 1.46902 * 110.99578 * 136.69171 * 15 14 13 17 17 C 1.50702 * 109.47382 * 70.34648 * 16 15 14 18 18 H 1.07995 * 119.99968 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99778 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00477 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99698 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47279 * 90.00368 * 21 19 17 23 23 H 1.48499 * 109.47363 * 209.99883 * 21 19 17 24 24 H 1.48498 * 109.47189 * 330.00157 * 21 19 17 25 25 C 1.48220 * 91.01851 * 23.69072 * 15 14 13 26 26 C 1.47784 * 110.99892 * 169.99901 * 10 9 5 27 27 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47116 * 299.99891 * 1 2 3 29 29 H 1.09001 * 109.47196 * 60.00176 * 1 2 3 30 30 H 1.09000 * 109.47116 * 240.00109 * 2 1 3 31 31 H 1.09001 * 109.47196 * 119.99824 * 2 1 3 32 32 H 1.09001 * 109.47005 * 299.99940 * 3 2 1 33 33 H 1.09000 * 109.47100 * 60.00099 * 3 2 1 34 34 H 1.09001 * 109.47203 * 299.99677 * 4 3 2 35 35 H 1.09000 * 109.47356 * 60.00113 * 4 3 2 36 36 H 1.09000 * 109.46837 * 306.44687 * 7 5 4 37 37 H 1.09006 * 109.46540 * 66.44018 * 7 5 4 38 38 H 1.08995 * 109.46889 * 51.70065 * 8 7 5 39 39 H 1.08995 * 109.46956 * 171.70045 * 8 7 5 40 40 H 1.09003 * 109.47213 * 291.70372 * 8 7 5 41 41 H 1.09006 * 109.46670 * 293.34603 * 9 5 4 42 42 H 1.08990 * 109.47210 * 53.34797 * 9 5 4 43 43 H 1.08998 * 110.34102 * 332.73820 * 11 10 9 44 44 H 1.09001 * 110.34263 * 94.99694 * 11 10 9 45 45 H 1.08994 * 111.02276 * 277.66387 * 12 11 10 46 46 H 1.08994 * 111.05564 * 153.77710 * 12 11 10 47 47 H 1.08993 * 113.82964 * 209.04632 * 14 13 12 48 48 H 1.09004 * 113.83090 * 340.64160 * 14 13 12 49 49 H 1.09004 * 109.46737 * 190.34113 * 16 15 14 50 50 H 1.08994 * 109.47138 * 310.33824 * 16 15 14 51 51 H 0.96996 * 120.00035 * 179.97438 * 20 19 17 52 52 H 1.09007 * 113.82990 * 222.10687 * 25 15 14 53 53 H 1.08995 * 113.94696 * 90.52521 * 25 15 14 54 54 H 1.08999 * 109.98872 * 243.54080 * 26 10 9 55 55 H 1.09004 * 109.98684 * 4.81534 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 6 3.6756 3.5696 1.3060 8 6 4.0432 5.0533 1.2398 9 6 5.6047 2.8869 -0.1277 10 7 6.0810 4.2673 -0.2883 11 6 5.6842 4.8153 -1.6041 12 6 6.8484 5.7552 -2.0145 13 6 8.0654 4.9970 -1.4563 14 6 8.7953 4.0902 -2.4427 15 7 9.6978 5.2448 -2.6656 16 6 11.1017 4.8145 -2.7101 17 6 11.3485 4.0355 -3.9763 18 1 10.5430 3.8756 -4.6776 19 6 12.6028 3.5269 -4.2393 20 7 13.5839 3.7221 -3.3855 21 14 12.9085 2.5607 -5.8085 22 1 13.3310 3.4895 -6.8874 23 1 13.9779 1.5579 -5.5719 24 1 11.6599 1.8666 -6.2137 25 6 9.3552 5.8030 -1.3360 26 6 7.5529 4.3361 -0.1749 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9336 0.9286 0.8891 35 1 3.9329 0.9288 -0.8909 36 1 2.6002 3.4677 1.4520 37 1 4.2012 3.1018 2.1386 38 1 3.6377 5.4875 0.3260 39 1 3.6257 5.5699 2.1040 40 1 5.1280 5.1593 1.2422 41 1 6.0441 2.4531 0.7706 42 1 5.8979 2.2979 -0.9965 43 1 5.5723 4.0111 -2.3313 44 1 4.7556 5.3791 -1.5153 45 1 6.7467 6.7325 -1.5430 46 1 6.9109 5.8509 -3.0984 47 1 9.2825 3.2340 -1.9763 48 1 8.2011 3.8207 -3.3159 49 1 11.7508 5.6900 -2.6898 50 1 11.3158 4.1835 -1.8476 51 1 14.4661 3.3640 -3.5705 52 1 9.2018 6.8823 -1.3377 53 1 10.0110 5.4672 -0.5328 54 1 7.8321 4.9361 0.6912 55 1 7.9667 3.3321 -0.0814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936310.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:55 Heat of formation + Delta-G solvation = -5.755875 kcal Electronic energy + Delta-G solvation = -26499.691235 eV Core-core repulsion = 23149.676862 eV Total energy + Delta-G solvation = -3350.014373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 308.252 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.74659 -39.38128 -37.37644 -35.34733 -34.77928 -32.16628 -31.34860 -30.54626 -29.05501 -27.72585 -27.16443 -25.54419 -24.37157 -23.58351 -22.73241 -22.03439 -21.48242 -20.60791 -19.45152 -18.59590 -17.07230 -17.04071 -16.54174 -16.37791 -16.07741 -15.83321 -15.55649 -15.00036 -14.93414 -14.50849 -14.42655 -14.26487 -14.09243 -13.82560 -13.54716 -13.40017 -13.21210 -13.07910 -12.98991 -12.94570 -12.70570 -12.54138 -12.43350 -12.32892 -12.14159 -12.06004 -11.94354 -11.86308 -11.70629 -11.46795 -11.41396 -11.34080 -11.30204 -11.05572 -11.01909 -10.93205 -10.67941 -9.55652 -9.00169 -8.27157 -6.38126 1.36096 1.37993 1.48973 2.35273 2.99365 3.05336 3.20948 3.38171 3.61378 3.86250 3.94013 4.00022 4.10801 4.18038 4.25492 4.36875 4.42312 4.45786 4.47186 4.56299 4.59008 4.63605 4.70083 4.72391 4.74813 4.76839 4.81823 4.89186 4.89896 4.92172 4.95732 5.00157 5.02178 5.02824 5.10474 5.13874 5.15348 5.21375 5.24685 5.27121 5.32043 5.35605 5.39495 5.43246 5.50432 5.51437 5.57291 5.66493 5.75779 5.98108 6.02189 6.11143 6.18733 6.41670 6.77091 7.31887 8.84454 Molecular weight = 308.25amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002663 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.507965 B =10510.165071 C =11667.254366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.113 4.113 5 C -0.075 4.075 6 H 0.067 0.933 7 C -0.103 4.103 8 C -0.150 4.150 9 C 0.054 3.946 10 N -0.509 5.509 11 C 0.049 3.951 12 C -0.093 4.093 13 C -0.090 4.090 14 C 0.034 3.966 15 N -0.492 5.492 16 C 0.178 3.822 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.013 3.987 26 C 0.057 3.943 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.000 1.000 50 H -0.029 1.029 51 H 0.266 0.734 52 H 0.093 0.907 53 H 0.056 0.944 54 H 0.087 0.913 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.485 -2.945 9.841 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.093 4.093 6 H 0.085 0.915 7 C -0.140 4.140 8 C -0.208 4.208 9 C -0.074 4.074 10 N -0.232 5.232 11 C -0.079 4.079 12 C -0.131 4.131 13 C -0.091 4.091 14 C -0.096 4.096 15 N -0.215 5.215 16 C 0.050 3.950 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.116 4.116 26 C -0.071 4.071 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.018 0.982 50 H -0.011 1.011 51 H 0.075 0.925 52 H 0.112 0.888 53 H 0.074 0.926 54 H 0.105 0.895 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.581 -2.296 9.678 27.447 hybrid contribution 1.651 -1.540 -0.730 2.373 sum -23.930 -3.837 8.948 25.835 Atomic orbital electron populations 1.21776 0.95544 1.01791 1.01895 1.21548 0.96179 0.96882 1.01808 1.21613 0.94710 0.96732 1.02150 1.21588 0.95955 0.95787 1.01757 1.21142 0.93301 0.95998 0.98901 0.91453 1.21434 1.00237 0.96257 0.96112 1.21960 1.04266 0.95034 0.99496 1.22424 0.96272 0.88516 1.00173 1.64016 1.09303 1.19576 1.30290 1.23118 0.98577 0.97173 0.88987 1.22279 0.91387 0.98646 1.00754 1.22503 0.94861 0.96129 0.95623 1.23457 0.94759 0.93302 0.98039 1.68504 1.06051 1.19117 1.27814 1.19833 0.86568 0.93415 0.95145 1.21381 0.95889 1.33620 1.05795 0.92483 1.25946 0.95706 0.97420 1.00611 1.70079 1.02311 1.46973 1.37858 0.85370 0.78077 0.78260 0.78856 1.19716 1.20411 1.18963 1.23716 0.95444 1.00819 0.91646 1.22626 0.88103 0.99553 0.96795 0.92541 0.92530 0.92800 0.92502 0.92075 0.92345 0.91414 0.91912 0.92688 0.92134 0.92949 0.93864 0.94757 0.89791 0.91078 0.95749 0.94162 0.88786 0.89411 0.91213 0.93643 0.90989 0.98204 1.01093 0.92550 0.88841 0.92615 0.89504 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.57 5.93 30.60 0.18 -1.39 16 3 C -0.11 -1.49 4.98 30.60 0.15 -1.34 16 4 C -0.11 -1.67 4.68 30.59 0.14 -1.52 16 5 C -0.07 -1.22 1.99 -10.79 -0.02 -1.24 16 6 H 0.07 1.16 7.25 -2.39 -0.02 1.14 16 7 C -0.10 -1.63 5.28 30.59 0.16 -1.47 16 8 C -0.15 -2.62 8.82 71.98 0.63 -1.98 16 9 C 0.05 1.08 3.92 86.30 0.34 1.42 16 10 N -0.51 -10.83 1.90 -886.45 -1.68 -12.51 16 11 C 0.05 1.03 5.56 86.84 0.48 1.52 16 12 C -0.09 -2.30 6.41 31.62 0.20 -2.10 16 13 C -0.09 -2.68 0.97 -52.11 -0.05 -2.73 16 14 C 0.03 1.30 6.70 85.91 0.58 1.88 16 15 N -0.49 -22.01 6.25 -935.18 -5.85 -27.86 16 16 C 0.18 9.80 4.58 85.56 0.39 10.19 16 17 C -0.53 -30.98 8.83 25.60 0.23 -30.76 16 18 H 0.06 3.31 7.79 -2.91 -0.02 3.28 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 21 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C 0.01 0.46 7.29 85.90 0.63 1.09 16 26 C 0.06 1.46 6.36 86.14 0.55 2.01 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.85 6.44 -2.39 -0.02 0.83 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.87 6.29 -2.39 -0.02 0.85 16 37 H 0.05 0.86 8.13 -2.38 -0.02 0.84 16 38 H 0.04 0.75 7.19 -2.39 -0.02 0.73 16 39 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 1.69 5.78 -2.39 -0.01 1.68 16 41 H 0.07 1.42 8.03 -2.38 -0.02 1.40 16 42 H 0.02 0.54 7.84 -2.39 -0.02 0.53 16 43 H 0.04 0.90 7.62 -2.39 -0.02 0.89 16 44 H 0.09 1.71 7.18 -2.39 -0.02 1.70 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 47 H 0.05 1.92 7.65 -2.39 -0.02 1.91 16 48 H 0.07 2.76 8.12 -2.38 -0.02 2.74 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H -0.03 -1.69 7.71 -2.39 -0.02 -1.70 16 51 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 52 H 0.09 3.00 8.12 -2.38 -0.02 2.98 16 53 H 0.06 2.05 7.80 -2.39 -0.02 2.03 16 54 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 55 H 0.05 1.27 7.29 -2.39 -0.02 1.25 16 Total: -1.00 -63.11 410.24 1.35 -61.77 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.79 Total: 15.14 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 5.77 Total: -26.86 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -7.24 Total: -97.14 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.11 1.35 -61.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936310.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.014 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds