Wall clock time and date at job start Tue Mar 31 2020 10:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.88232 * 2 1 4 4 C 1.54349 * 110.82257 * 236.48747 * 2 1 3 5 5 C 1.51366 * 105.17502 * 215.42430 * 4 2 1 6 6 C 1.38500 * 130.38231 * 197.19477 * 5 4 2 7 7 C 1.38081 * 120.23418 * 179.97438 * 6 5 4 8 8 C 1.38349 * 119.92185 * 359.97438 * 7 6 5 9 9 Br 1.89096 * 120.04188 * 180.02562 * 8 7 6 10 10 C 1.38191 * 119.91499 * 359.97438 * 8 7 6 11 11 C 1.38232 * 109.75338 * 17.18827 * 5 4 2 12 12 C 1.51364 * 109.75885 * 0.02562 * 11 5 4 13 13 H 1.09006 * 110.30652 * 223.78540 * 12 11 5 14 14 N 1.46505 * 110.30370 * 101.73094 * 12 11 5 15 15 C 1.36931 * 119.99788 * 86.45398 * 14 12 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 12 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48508 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00044 * 19 17 15 23 23 H 1.09007 * 109.46825 * 296.48288 * 1 2 3 24 24 H 1.09000 * 109.47233 * 56.48366 * 1 2 3 25 25 H 1.08999 * 109.47051 * 176.48146 * 1 2 3 26 26 H 1.09009 * 109.46889 * 183.51460 * 3 2 1 27 27 H 1.08996 * 109.47630 * 303.51574 * 3 2 1 28 28 H 1.08998 * 109.46919 * 63.51835 * 3 2 1 29 29 H 1.09002 * 110.30078 * 96.49281 * 4 2 1 30 30 H 1.09005 * 110.30194 * 334.34999 * 4 2 1 31 31 H 1.08001 * 119.88330 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.04034 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.89903 * 180.02562 * 10 8 7 34 34 H 0.97000 * 119.99792 * 266.45193 * 14 12 11 35 35 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0787 -0.7965 -1.2029 5 6 3.3322 -1.4734 -0.6913 6 6 4.3891 -2.0439 -1.3810 7 6 5.4427 -2.6122 -0.6926 8 6 5.4435 -2.6116 0.6909 9 35 6.8849 -3.3882 1.6369 10 6 4.3903 -2.0418 1.3805 11 6 3.3322 -1.4734 0.6910 12 6 2.0785 -0.7971 1.2027 13 1 2.3205 -0.1240 2.0252 14 7 1.1018 -1.7989 1.6375 15 6 1.1512 -2.2947 2.9130 16 1 1.9098 -1.9470 3.5986 17 6 0.2223 -3.2397 3.3267 18 7 -0.7025 -3.6631 2.4913 19 14 0.2849 -3.9104 5.0690 20 1 1.4108 -3.2783 5.8026 21 1 -0.9920 -3.6055 5.7629 22 1 0.4862 -5.3811 5.0263 23 1 -0.3633 0.4583 0.9199 24 1 -0.3634 0.5674 -0.8568 25 1 -0.3633 -1.0257 -0.0631 26 1 3.1633 1.4033 -0.0630 27 1 1.6748 1.9713 -0.8567 28 1 1.7767 1.9323 0.9198 29 1 2.3212 -0.1221 -2.0241 30 1 1.3517 -1.5416 -1.5264 31 1 4.3893 -2.0443 -2.4610 32 1 6.2650 -3.0566 -1.2336 33 1 4.3914 -2.0411 2.4605 34 1 0.4203 -2.1109 1.0219 35 1 -1.3513 -4.3237 2.7803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336751237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:47 Heat of formation + Delta-G solvation = 32.357987 kcal Electronic energy + Delta-G solvation = -18052.620478 eV Core-core repulsion = 15289.489284 eV Total energy + Delta-G solvation = -2763.131194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 309.042 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13844 -36.89950 -33.74407 -31.98445 -31.24537 -29.99110 -29.49665 -27.00024 -25.95904 -25.34728 -23.01409 -21.33884 -20.30877 -18.58213 -17.21575 -15.96792 -15.07672 -14.87378 -14.80035 -14.17184 -13.87122 -13.47156 -13.06699 -12.84653 -12.73446 -12.50169 -12.08607 -11.83697 -11.47034 -11.24228 -10.97780 -10.83066 -10.70218 -10.57514 -10.49114 -10.27260 -10.17073 -10.04156 -9.80793 -9.67590 -8.99988 -8.44452 -8.06894 -7.05252 -5.83746 -3.11676 1.49468 1.73767 1.91844 3.40562 3.47102 3.48547 4.00218 4.54855 4.69678 4.99079 5.25371 5.25820 5.28134 5.41216 5.54201 5.68813 5.74659 5.82673 5.90841 6.05508 6.09537 6.10199 6.20058 6.23781 6.30374 6.38181 6.46491 6.53960 6.59494 6.70206 6.79719 6.94659 7.12486 7.23761 7.66110 8.34467 9.46649 10.00312 10.35940 11.38408 Molecular weight = 309.04amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.006696 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.029653 B = 4180.827665 C = 6108.310668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.071 4.071 5 C -0.082 4.082 6 C -0.111 4.111 7 C -0.105 4.105 8 C -0.092 4.092 9 Br -0.070 7.070 10 C -0.064 4.064 11 C -0.082 4.082 12 C 0.218 3.782 13 H 0.059 0.941 14 N -0.705 5.705 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.388 0.612 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.739 5.922 -7.644 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.189 4.189 4 C -0.108 4.108 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.171 4.171 9 Br 0.015 6.985 10 C -0.085 4.085 11 C -0.087 4.087 12 C 0.107 3.893 13 H 0.077 0.923 14 N -0.345 5.345 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.736 3.264 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.225 0.775 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.244 5.576 -7.073 15.200 hybrid contribution -0.379 -0.727 0.556 0.991 sum 11.865 4.848 -6.517 14.379 Atomic orbital electron populations 1.21647 0.93100 1.02571 1.01021 1.21437 0.96369 0.94638 0.94912 1.21740 1.00590 0.94980 1.01569 1.21190 0.93773 0.98175 0.97699 1.20721 0.95303 0.97492 0.94783 1.20477 0.93551 0.99655 0.99299 1.20762 0.99090 1.00749 0.91946 1.21547 0.95482 1.05629 0.94476 1.96607 1.43451 1.82406 1.76046 1.20566 0.91526 0.96193 1.00193 1.21926 0.95185 0.97444 0.94140 1.19786 0.85598 0.90056 0.93892 0.92322 1.42573 1.32447 1.46959 1.12561 1.19279 1.11373 1.17920 0.88624 0.91071 1.24728 0.98030 0.99628 0.98072 1.69661 1.19089 1.34348 1.34558 0.86153 0.77286 0.78694 0.84310 1.20411 1.21791 1.21813 0.92016 0.93741 0.91432 0.92816 0.92807 0.92374 0.91184 0.90026 0.86183 0.85771 0.85620 0.77490 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.89 37.16 0.29 -1.73 16 2 C -0.07 -1.14 0.90 -153.09 -0.14 -1.28 16 3 C -0.13 -1.72 8.47 37.16 0.31 -1.40 16 4 C -0.07 -1.06 5.86 -26.85 -0.16 -1.22 16 5 C -0.08 -1.35 6.14 -104.20 -0.64 -1.99 16 6 C -0.11 -1.64 10.04 -39.54 -0.40 -2.04 16 7 C -0.11 -1.58 9.79 -39.60 -0.39 -1.96 16 8 C -0.09 -1.53 6.22 -39.56 -0.25 -1.78 16 9 Br -0.07 -1.03 33.70 -68.01 -2.29 -3.33 16 10 C -0.06 -1.19 9.78 -39.51 -0.39 -1.58 16 11 C -0.08 -1.54 5.76 -104.21 -0.60 -2.14 16 12 C 0.22 4.23 2.89 -68.04 -0.20 4.04 16 13 H 0.06 1.17 7.88 -51.93 -0.41 0.76 16 14 N -0.71 -16.87 4.60 -53.53 -0.25 -17.11 16 15 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 19 Si 0.90 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 26 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 30 H 0.08 1.26 7.83 -51.93 -0.41 0.86 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.39 9.80 5.69 -40.82 -0.23 9.57 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -28.72 307.94 -9.69 -38.41 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.71 Total: 6.83 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.79 Total: -20.03 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.48 Total: -43.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -2.29 Total: -3.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.72 -9.69 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336751237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.771 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds