Wall clock time and date at job start Tue Mar 31 2020 09:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36937 * 120.00583 * 2 1 4 4 H 1.07993 * 120.00584 * 162.09644 * 3 2 1 5 5 C 1.38817 * 119.99521 * 341.82254 * 3 2 1 6 6 N 1.31616 * 120.00186 * 344.17686 * 5 3 2 7 7 Si 1.86798 * 119.99775 * 164.17498 * 5 3 2 8 8 H 1.48502 * 109.47414 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47203 * 120.00390 * 7 5 3 10 10 H 1.48503 * 109.47244 * 240.00249 * 7 5 3 11 11 C 1.46505 * 120.00044 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47028 * 269.99968 * 11 2 1 13 13 N 1.34006 * 126.04677 * 259.68875 * 12 11 2 14 14 H 0.96996 * 125.02546 * 359.96251 * 13 12 11 15 15 N 1.39966 * 109.94911 * 179.83718 * 13 12 11 16 16 C 1.32058 * 108.95128 * 0.43527 * 15 13 12 17 17 C 1.38235 * 126.04935 * 79.99964 * 12 11 2 18 18 C 1.41156 * 134.80448 * 0.02562 * 17 12 11 19 19 C 1.35654 * 119.55237 * 180.02562 * 18 17 12 20 20 C 1.39674 * 121.73340 * 359.95929 * 19 18 17 21 21 C 1.35726 * 121.80522 * 0.02562 * 20 19 18 22 22 Br 1.89101 * 120.20914 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47254 * 84.85306 * 1 2 3 24 24 H 1.08994 * 109.47348 * 204.85642 * 1 2 3 25 25 H 1.09003 * 109.46898 * 324.85232 * 1 2 3 26 26 H 0.97001 * 120.00233 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47056 * 29.99682 * 11 2 1 28 28 H 1.09000 * 109.47429 * 149.99598 * 11 2 1 29 29 H 1.07998 * 120.22469 * 359.96499 * 18 17 12 30 30 H 1.07993 * 119.13578 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.09821 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1904 1.2085 0.2875 5 6 1.5076 2.3580 -0.3751 6 7 0.3611 2.3033 -1.0192 7 14 2.2707 4.0131 0.0345 8 1 3.5513 3.8028 0.7565 9 1 2.5282 4.7637 -1.2207 10 1 1.3396 4.7887 0.8929 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7044 1.4201 13 7 3.5946 -1.5577 2.0989 14 1 4.4015 -1.1499 1.7476 15 7 3.4542 -2.0773 3.3910 16 6 2.2323 -2.5588 3.5291 17 6 1.5395 -2.3315 2.2514 18 6 0.1996 -2.7557 2.1202 19 6 -0.4170 -3.3585 3.1675 20 6 0.2396 -3.5746 4.3812 21 6 1.5273 -3.1926 4.5758 22 35 2.3726 -3.5083 6.2377 23 1 -0.3634 0.0922 -1.0235 24 1 -0.3634 -0.9324 0.4319 25 1 -0.3633 0.8403 0.5916 26 1 -0.0874 3.1224 -1.2816 27 1 1.6083 -2.0282 -0.5147 28 1 3.1498 -1.1383 -0.5144 29 1 -0.3315 -2.6005 1.1927 30 1 -1.4423 -3.6800 3.0598 31 1 -0.2921 -4.0591 5.1869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237304124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:38 Heat of formation + Delta-G solvation = 117.688568 kcal Electronic energy + Delta-G solvation = -17417.393718 eV Core-core repulsion = 14554.422392 eV Total energy + Delta-G solvation = -2862.971326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 309.017 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.99114 -37.07274 -35.83303 -32.73166 -31.61010 -30.67490 -29.71605 -28.39340 -26.27742 -25.78755 -23.69618 -21.78812 -21.45403 -19.30388 -17.35358 -16.85981 -16.47574 -15.56705 -15.26439 -14.51572 -14.26890 -13.81439 -13.60261 -13.37348 -13.00987 -12.15495 -11.99560 -11.96038 -11.49563 -11.17009 -11.00043 -10.89263 -10.67570 -10.60587 -10.16319 -10.11407 -10.01299 -9.92861 -9.54729 -8.75430 -8.52037 -7.33423 -7.06450 -5.94541 -3.39466 0.77225 1.90604 2.04373 2.65276 3.03437 3.26883 3.35308 3.35817 3.97386 4.34061 4.59339 4.86965 5.15983 5.32398 5.34768 5.40260 5.48894 5.63504 5.76796 5.94417 6.14222 6.28340 6.44590 6.51409 6.69688 6.79579 7.02810 7.23053 7.43184 7.49788 7.62455 7.89840 8.11988 8.97821 9.59727 10.04111 11.09754 Molecular weight = 309.02amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.004256 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.255652 B = 6577.873997 C = 7036.072376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.582 5.582 3 C -0.272 4.272 4 H 0.069 0.931 5 C 0.011 3.989 6 N -0.898 5.898 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.287 1.287 11 C 0.195 3.805 12 C 0.147 3.853 13 N -0.418 5.418 14 H 0.441 0.559 15 N -0.316 5.316 16 C 0.121 3.879 17 C -0.213 4.213 18 C 0.006 3.994 19 C -0.190 4.190 20 C -0.031 4.031 21 C -0.091 4.091 22 Br -0.063 7.063 23 H 0.036 0.964 24 H 0.006 0.994 25 H 0.047 0.953 26 H 0.256 0.744 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -12.926 8.370 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.303 5.303 3 C -0.400 4.400 4 H 0.087 0.913 5 C -0.188 4.188 6 N -0.541 5.541 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.213 1.213 11 C 0.064 3.936 12 C 0.002 3.998 13 N -0.117 5.117 14 H 0.286 0.714 15 N -0.143 5.143 16 C -0.035 4.035 17 C -0.224 4.224 18 C -0.014 4.014 19 C -0.211 4.211 20 C -0.055 4.055 21 C -0.173 4.173 22 Br 0.023 6.977 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.923 -12.662 9.517 15.956 hybrid contribution -0.150 1.313 -0.541 1.428 sum 1.773 -11.349 8.976 14.578 Atomic orbital electron populations 1.21001 0.81555 0.96338 0.99840 1.43941 1.02338 0.99696 1.84316 1.19160 0.95640 0.84595 1.40639 0.91297 1.24903 0.97429 0.98360 0.98126 1.70105 1.17635 1.26915 1.39491 0.86197 0.78601 0.83920 0.77839 1.20331 1.21463 1.21322 1.19608 0.98288 0.90114 0.85600 1.23696 0.85514 0.91721 0.98835 1.46374 1.12404 1.43261 1.09701 0.71424 1.77669 1.17554 1.22970 0.96091 1.20292 0.92062 0.97430 0.93739 1.19251 0.96729 1.12407 0.94037 1.20540 0.91273 0.91146 0.98461 1.20334 1.00648 1.06790 0.93308 1.20603 0.91766 0.95496 0.97675 1.20157 0.95651 1.10611 0.90912 1.96592 1.81288 1.95242 1.24619 0.94616 0.97511 0.93409 0.93418 0.90592 0.91339 0.85264 0.85615 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.51 8.98 59.84 0.54 4.05 16 2 N -0.58 -13.14 2.91 -182.51 -0.53 -13.67 16 3 C -0.27 -6.87 9.69 -15.06 -0.15 -7.02 16 4 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 5 C 0.01 0.30 5.06 -17.43 -0.09 0.21 16 6 N -0.90 -24.60 10.59 55.49 0.59 -24.01 16 7 Si 0.91 21.00 29.58 -169.99 -5.03 15.97 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.20 3.45 6.20 -5.19 -0.03 3.41 16 12 C 0.15 2.57 6.86 -81.64 -0.56 2.01 16 13 N -0.42 -7.05 7.18 33.85 0.24 -6.81 16 14 H 0.44 6.15 8.96 -182.70 -1.64 4.51 16 15 N -0.32 -5.91 12.70 33.26 0.42 -5.49 16 16 C 0.12 2.23 7.27 -83.04 -0.60 1.62 16 17 C -0.21 -3.77 6.26 -105.19 -0.66 -4.43 16 18 C 0.01 0.10 9.50 -39.40 -0.37 -0.28 16 19 C -0.19 -2.54 9.90 -39.97 -0.40 -2.94 16 20 C -0.03 -0.43 9.62 -39.95 -0.38 -0.81 16 21 C -0.09 -1.47 6.24 -39.35 -0.25 -1.72 16 22 Br -0.06 -0.91 33.72 -68.01 -2.29 -3.20 16 23 H 0.04 0.86 7.45 -51.93 -0.39 0.47 16 24 H 0.01 0.12 5.50 -51.93 -0.29 -0.16 16 25 H 0.05 1.20 7.09 -51.93 -0.37 0.83 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 29 H 0.13 1.79 6.27 -52.49 -0.33 1.46 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 287.26 15.07 4.33 4.33 Total: -1.00 -29.74 287.26 -9.46 -39.20 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.24 Total: -0.42 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.95 Total: -5.88 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.72 Total: -49.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.29 Total: -3.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.74 -9.46 -39.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237304124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.885 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds