Wall clock time and date at job start Tue Mar 31 2020 10:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99596 * 2 1 4 4 H 1.48503 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46969 * 299.99620 * 3 2 1 6 6 H 1.48500 * 109.47218 * 59.99886 * 3 2 1 7 7 C 1.37875 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00447 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99843 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46920 * 299.99814 * 9 7 2 11 11 N 1.46902 * 109.46835 * 179.97438 * 9 7 2 12 12 C 1.46906 * 110.99573 * 155.00105 * 11 9 7 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.38170 * 120.01346 * 259.72435 * 13 12 11 15 15 C 1.38230 * 120.06642 * 179.76822 * 14 13 12 16 16 C 1.38408 * 120.09830 * 0.51005 * 15 14 13 17 17 Cl 1.73593 * 119.98635 * 179.76741 * 16 15 14 18 18 C 1.38241 * 120.02665 * 359.74392 * 16 15 14 19 19 C 1.38726 * 119.93499 * 359.97438 * 18 16 15 20 20 O 1.35895 * 120.05224 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47011 * 60.00115 * 9 7 2 22 22 F 1.39899 * 109.47049 * 179.97438 * 21 9 7 23 23 F 1.39901 * 109.46697 * 299.99879 * 21 9 7 24 24 F 1.39895 * 109.46988 * 59.99712 * 21 9 7 25 25 H 0.96994 * 120.00796 * 0.02562 * 1 2 3 26 26 H 1.00896 * 111.00219 * 278.95745 * 11 9 7 27 27 H 1.09002 * 109.46991 * 299.99841 * 12 11 9 28 28 H 1.09000 * 109.47202 * 60.00133 * 12 11 9 29 29 H 1.08001 * 119.96612 * 0.02562 * 14 13 12 30 30 H 1.07994 * 119.94887 * 180.25402 * 15 14 13 31 31 H 1.07997 * 120.02956 * 180.02562 * 18 16 15 32 32 H 0.96696 * 114.00386 * 270.02998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2058 -3.6156 0.0005 12 6 1.6032 -4.8235 0.5801 13 6 2.6101 -5.9447 0.5638 14 6 2.5510 -6.9124 -0.4206 15 6 3.4769 -7.9386 -0.4395 16 6 4.4590 -8.0053 0.5335 17 17 5.6167 -9.2986 0.5105 18 6 4.5187 -7.0420 1.5233 19 6 3.5936 -6.0084 1.5400 20 8 3.6498 -5.0605 2.5122 21 6 0.3720 -2.5805 -1.2490 22 9 -0.3270 -3.7924 -1.2493 23 9 -0.5371 -1.5172 -1.2496 24 9 1.1768 -2.5066 -2.3910 25 1 -0.4851 0.8399 -0.0004 26 1 2.5523 -3.7952 -0.9299 27 1 1.3014 -4.6217 1.6079 28 1 0.7297 -5.1106 -0.0053 29 1 1.7830 -6.8647 -1.1786 30 1 3.4314 -8.6917 -1.2122 31 1 5.2852 -7.0938 2.2823 32 1 3.1310 -5.2738 3.2999 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308947607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:52 Heat of formation + Delta-G solvation = -178.003262 kcal Electronic energy + Delta-G solvation = -23656.579984 eV Core-core repulsion = 19421.064693 eV Total energy + Delta-G solvation = -4235.515291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.48151 -48.12708 -47.71099 -40.94443 -38.03960 -37.55618 -36.92637 -34.76494 -32.50594 -31.02011 -29.31469 -26.49962 -25.71776 -23.77592 -22.89244 -22.31585 -19.47768 -19.20855 -18.72863 -18.71811 -17.99470 -17.22598 -17.07307 -16.69817 -16.19711 -15.74961 -15.22594 -15.09023 -14.92300 -14.61822 -14.52688 -14.39933 -14.21706 -14.09010 -14.01230 -13.91543 -13.54057 -13.25305 -12.98369 -12.68971 -12.46721 -12.35403 -12.17013 -11.97919 -11.93343 -11.56782 -11.34382 -10.58294 -9.89566 -9.54652 -9.26972 -8.13392 -6.35879 0.03993 0.21555 1.07631 1.44034 1.46843 1.59404 2.38239 2.44705 2.47166 2.98656 3.31467 3.37185 3.74303 3.78468 3.82619 3.87473 4.06279 4.17365 4.30822 4.51459 4.59703 4.77667 4.87925 4.88689 5.10928 5.19599 5.47150 5.64979 5.67324 5.80449 6.23473 6.45389 6.73046 6.91126 7.32723 8.78590 Molecular weight = 309.05amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003878 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.456026 B = 7218.207925 C = 7908.623440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.199 3.801 10 H 0.056 0.944 11 N -0.658 5.658 12 C 0.094 3.906 13 C -0.114 4.114 14 C -0.087 4.087 15 C -0.119 4.119 16 C -0.023 4.023 17 Cl -0.063 7.063 18 C -0.147 4.147 19 C 0.140 3.860 20 O -0.495 6.495 21 C 0.394 3.606 22 F -0.219 7.219 23 F -0.153 7.153 24 F -0.208 7.208 25 H 0.264 0.736 26 H 0.335 0.665 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -15.524 2.159 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.087 3.913 10 H 0.073 0.927 11 N -0.287 5.287 12 C -0.034 4.034 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.138 4.138 16 C -0.050 4.050 17 Cl -0.034 7.034 18 C -0.166 4.166 19 C 0.094 3.906 20 O -0.307 6.307 21 C 0.337 3.663 22 F -0.201 7.201 23 F -0.134 7.134 24 F -0.190 7.190 25 H 0.074 0.926 26 H 0.153 0.847 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.505 -15.034 2.364 16.183 hybrid contribution -0.850 0.398 -0.684 1.161 sum 4.655 -14.635 1.680 15.449 Atomic orbital electron populations 1.70474 1.06873 1.27451 1.46566 1.25857 0.95865 1.03022 0.94274 0.85324 0.78960 0.78656 0.77658 1.19154 1.20808 1.20026 1.21060 0.93915 0.88846 1.52694 0.91246 1.20226 0.89646 0.92488 0.88918 0.92660 1.60603 1.36312 1.04572 1.27196 1.20966 0.93812 0.87752 1.00915 1.20344 0.97174 0.96701 0.97263 1.21145 0.99012 0.92968 0.97412 1.21225 0.93947 0.99842 0.98774 1.20801 0.94112 0.92131 0.97998 1.98368 1.58481 1.48326 1.98241 1.21388 1.01276 0.93415 1.00490 1.18175 0.93408 0.87844 0.91189 1.84905 1.73518 1.43178 1.29111 1.24262 0.81016 0.72346 0.88639 1.92987 1.81841 1.48271 1.97045 1.93386 1.69104 1.54601 1.96341 1.92982 1.74251 1.96136 1.55603 0.92601 0.84694 0.90275 0.93530 0.83682 0.82594 0.83364 0.73496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.29 9.50 21.45 0.20 -48.09 16 2 C 0.01 0.71 5.20 84.65 0.44 1.15 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.53 -27.97 8.58 25.60 0.22 -27.75 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.20 9.53 2.26 44.17 0.10 9.63 16 10 H 0.06 2.83 7.80 -2.39 -0.02 2.81 16 11 N -0.66 -26.65 6.22 -499.44 -3.10 -29.76 16 12 C 0.09 3.09 5.18 85.56 0.44 3.53 16 13 C -0.11 -3.15 5.41 -19.76 -0.11 -3.25 16 14 C -0.09 -2.02 9.66 22.25 0.22 -1.80 16 15 C -0.12 -2.43 9.83 22.31 0.22 -2.21 16 16 C -0.02 -0.50 6.32 22.31 0.14 -0.36 16 17 Cl -0.06 -1.19 28.95 -2.72 -0.08 -1.27 16 18 C -0.15 -3.36 9.77 22.39 0.22 -3.14 16 19 C 0.14 3.70 6.68 22.50 0.15 3.85 16 20 O -0.49 -13.35 12.74 -92.37 -1.18 -14.53 16 21 C 0.39 18.96 2.74 71.98 0.20 19.16 16 22 F -0.22 -9.41 15.04 44.97 0.68 -8.74 16 23 F -0.15 -8.26 12.91 44.97 0.58 -7.68 16 24 F -0.21 -9.92 16.31 44.97 0.73 -9.19 16 25 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 26 H 0.33 13.48 7.87 -89.70 -0.71 12.78 16 27 H 0.08 2.57 7.77 -2.39 -0.02 2.56 16 28 H 0.05 1.53 5.88 -2.39 -0.01 1.52 16 29 H 0.15 3.01 8.03 -2.91 -0.02 2.99 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.41 6.89 9.06 -74.06 -0.67 6.22 16 Total: -1.00 -60.15 302.81 1.93 -58.22 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.17 Total: 17.52 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 2.24 Total: -1.19 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.90 Total: -77.85 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.18 Total: -14.53 kcal Atomic # 9 Polarization: -27.59 SS G_CDS: 1.99 Total: -25.60 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -60.15 1.93 -58.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308947607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.780 kcal (2) G-P(sol) polarization free energy of solvation -60.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds