Wall clock time and date at job start Tue Mar 31 2020 10:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99895 * 2 1 4 4 H 1.08000 * 119.99842 * 200.61602 * 3 2 1 5 5 C 1.38806 * 120.00313 * 20.61710 * 3 2 1 6 6 N 1.31622 * 119.99736 * 14.76117 * 5 3 2 7 7 Si 1.86803 * 120.00131 * 194.76422 * 5 3 2 8 8 H 1.48498 * 109.47449 * 85.00659 * 7 5 3 9 9 H 1.48507 * 109.46720 * 205.00468 * 7 5 3 10 10 H 1.48496 * 109.46995 * 325.00469 * 7 5 3 11 11 S 1.65596 * 120.00253 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40500 * 156.45601 * 11 2 1 13 13 O 1.42098 * 106.39995 * 23.53686 * 11 2 1 14 14 C 1.76207 * 107.21830 * 269.99940 * 11 2 1 15 15 C 1.38423 * 120.02208 * 269.97580 * 14 11 2 16 16 C 1.38248 * 120.48753 * 180.36999 * 15 14 11 17 17 C 1.38309 * 120.36405 * 359.45991 * 16 15 14 18 18 C 1.39579 * 119.25708 * 0.37025 * 17 16 15 19 19 C 1.37892 * 120.02216 * 89.99624 * 14 11 2 20 20 C 1.47596 * 120.11045 * 180.08838 * 18 17 16 21 21 O 1.21253 * 121.17934 * 168.70045 * 20 18 17 22 22 C 1.51476 * 117.63879 * 348.70406 * 20 18 17 23 23 C 1.53438 * 107.37422 * 42.48434 * 22 20 18 24 24 C 1.50416 * 119.12447 * 180.10343 * 17 16 15 25 25 H 1.09000 * 109.46583 * 275.00085 * 1 2 3 26 26 H 1.08995 * 109.47169 * 34.99721 * 1 2 3 27 27 H 1.08999 * 109.47253 * 155.00697 * 1 2 3 28 28 H 0.97006 * 119.99766 * 180.02562 * 6 5 3 29 29 H 1.08005 * 119.75636 * 0.11236 * 15 14 11 30 30 H 1.07998 * 119.81628 * 179.75900 * 16 15 14 31 31 H 1.07996 * 120.11667 * 359.96584 * 19 14 11 32 32 H 1.08995 * 109.87474 * 283.01288 * 22 20 18 33 33 H 1.08996 * 109.87432 * 161.95248 * 22 20 18 34 34 H 1.09003 * 109.48659 * 176.01377 * 23 22 20 35 35 H 1.09000 * 109.50770 * 55.96422 * 23 22 20 36 36 H 1.08996 * 109.11930 * 278.20851 * 24 17 16 37 37 H 1.08997 * 109.12370 * 37.35742 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1778 1.2159 -0.3293 5 6 1.5223 2.3496 0.4233 6 7 0.3895 2.2813 1.0899 7 14 2.2859 4.0123 0.0468 8 1 1.8714 4.4517 -1.3098 9 1 1.8275 5.0061 1.0506 10 1 3.7657 3.9010 0.1004 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4114 -2.4062 -0.5454 14 6 2.5539 -1.8865 1.6823 15 6 3.6945 -1.4655 2.3438 16 6 3.9126 -1.8212 3.6618 17 6 2.9871 -2.5938 4.3398 18 6 1.8345 -3.0168 3.6759 19 6 1.6220 -2.6606 2.3409 20 6 0.8335 -3.8403 4.3819 21 8 -0.2597 -4.0491 3.9006 22 6 1.2203 -4.4152 5.7288 23 6 1.9572 -3.3139 6.5025 24 6 3.2514 -2.9626 5.7739 25 1 -0.3632 0.0896 1.0238 26 1 -0.3633 0.8418 -0.5894 27 1 -0.3634 -0.9314 -0.4342 28 1 -0.0491 3.0946 1.3853 29 1 4.4216 -0.8580 1.8252 30 1 4.8082 -1.4899 4.1663 31 1 0.7310 -2.9904 1.8274 32 1 1.8772 -5.2739 5.5904 33 1 0.3257 -4.7160 6.2740 34 1 2.1899 -3.6685 7.5067 35 1 1.3244 -2.4287 6.5671 36 1 3.9224 -3.8210 5.8039 37 1 3.7263 -2.1206 6.2774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290875607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:56 Heat of formation + Delta-G solvation = -105.483678 kcal Electronic energy + Delta-G solvation = -23730.081545 eV Core-core repulsion = 20177.444480 eV Total energy + Delta-G solvation = -3552.637065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.087 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.49931 -39.29608 -37.90905 -37.55506 -36.59308 -36.46465 -33.37760 -32.54567 -31.61206 -29.08737 -28.36231 -25.45635 -24.63006 -24.30652 -22.55791 -20.81071 -20.05290 -19.08656 -18.62105 -18.18918 -17.36468 -16.90064 -16.47199 -16.39542 -16.15913 -15.91058 -15.53943 -15.11267 -14.88043 -14.76014 -14.58380 -14.25705 -13.93273 -13.72847 -13.31336 -13.15018 -13.10124 -12.98692 -12.75857 -12.68146 -12.48215 -12.39330 -12.20243 -12.05311 -11.93068 -11.83963 -11.65736 -11.15676 -10.66106 -10.14468 -10.09149 -9.94847 -8.38997 -5.97313 -0.49767 -0.22358 0.01576 1.22858 1.49723 1.54484 1.62741 2.21961 2.42818 2.66520 2.91244 2.93775 3.17017 3.57627 3.60052 3.72330 3.77844 4.03135 4.11469 4.17281 4.33234 4.49373 4.52296 4.58777 4.71365 4.78455 4.83727 4.93689 4.96997 5.06594 5.13941 5.18111 5.20413 5.24283 5.30454 5.34378 5.51238 5.79154 6.36256 6.38955 6.77911 7.21186 8.59112 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.005043 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.402712 B = 5551.325326 C = 5892.744062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.822 5.822 3 C -0.282 4.282 4 H 0.113 0.887 5 C -0.001 4.001 6 N -0.865 5.865 7 Si 0.993 3.007 8 H -0.268 1.268 9 H -0.274 1.274 10 H -0.257 1.257 11 S 2.559 3.441 12 O -1.003 7.003 13 O -1.022 7.022 14 C -0.696 4.696 15 C -0.008 4.008 16 C -0.152 4.152 17 C 0.013 3.987 18 C -0.217 4.217 19 C 0.002 3.998 20 C 0.393 3.607 21 O -0.501 6.501 22 C -0.153 4.153 23 C -0.110 4.110 24 C -0.089 4.089 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.280 0.720 29 H 0.139 0.861 30 H 0.176 0.824 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -5.446 14.269 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.647 5.647 3 C -0.427 4.427 4 H 0.130 0.870 5 C -0.211 4.211 6 N -0.504 5.504 7 Si 0.815 3.185 8 H -0.194 1.194 9 H -0.199 1.199 10 H -0.181 1.181 11 S 2.660 3.340 12 O -0.993 6.993 13 O -1.012 7.012 14 C -0.779 4.779 15 C -0.027 4.027 16 C -0.170 4.170 17 C 0.012 3.988 18 C -0.219 4.219 19 C -0.018 4.018 20 C 0.274 3.726 21 O -0.380 6.380 22 C -0.190 4.190 23 C -0.147 4.147 24 C -0.125 4.125 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.193 0.807 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.730 -6.206 13.413 15.851 hybrid contribution -0.267 0.805 -0.104 0.855 sum 5.463 -5.401 13.309 15.367 Atomic orbital electron populations 1.21217 0.78984 1.00045 1.01390 1.53957 1.13361 1.18740 1.78682 1.20143 1.00493 0.83633 1.38468 0.86992 1.26500 0.96810 1.03728 0.94040 1.70209 1.17174 1.31115 1.31897 0.84937 0.79258 0.75870 0.78439 1.19356 1.19941 1.18119 1.09622 0.73032 0.74024 0.77344 1.93313 1.42054 1.85034 1.78891 1.93318 1.66028 1.62259 1.79606 1.31965 1.03676 1.11535 1.30678 1.21323 0.93451 0.92543 0.95384 1.21670 1.01466 1.00037 0.93847 1.20793 0.89893 0.90526 0.97573 1.20729 0.99669 1.06477 0.95028 1.21041 0.95788 0.90567 0.94375 1.23578 0.84483 0.75749 0.88749 1.90519 1.24549 1.53571 1.69326 1.22388 1.04261 1.00930 0.91391 1.21578 0.95206 0.97438 1.00523 1.20790 0.99478 1.04928 0.87317 0.93882 0.91050 0.93112 0.91052 0.84325 0.80678 0.86787 0.85353 0.87586 0.85872 0.92370 0.86221 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.35 8.94 127.77 1.14 7.49 16 2 N -0.82 -42.03 3.31 -364.91 -1.21 -43.24 16 3 C -0.28 -14.39 9.45 84.03 0.79 -13.60 16 4 H 0.11 5.64 7.16 -2.91 -0.02 5.62 16 5 C 0.00 -0.07 5.07 84.86 0.43 0.36 16 6 N -0.86 -43.12 10.67 21.65 0.23 -42.89 16 7 Si 0.99 37.68 29.58 68.60 2.03 39.70 16 8 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 9 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 10 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 11 S 2.56 127.86 5.65 -56.49 -0.32 127.55 16 12 O -1.00 -52.61 16.06 -128.00 -2.06 -54.67 16 13 O -1.02 -54.74 15.84 -128.00 -2.03 -56.77 16 14 C -0.70 -30.76 5.97 22.23 0.13 -30.63 16 15 C -0.01 -0.29 9.51 22.32 0.21 -0.08 16 16 C -0.15 -4.19 9.65 22.29 0.22 -3.98 16 17 C 0.01 0.33 5.78 -19.61 -0.11 0.22 16 18 C -0.22 -7.46 5.82 -20.11 -0.12 -7.58 16 19 C 0.00 0.08 9.08 22.56 0.20 0.29 16 20 C 0.39 12.20 6.89 28.41 0.20 12.40 16 21 O -0.50 -19.82 17.26 -2.95 -0.05 -19.87 16 22 C -0.15 -2.61 6.18 30.24 0.19 -2.42 16 23 C -0.11 -1.38 5.90 30.62 0.18 -1.20 16 24 C -0.09 -1.19 5.70 29.64 0.17 -1.02 16 25 H 0.04 2.15 7.40 -2.39 -0.02 2.14 16 26 H 0.07 3.46 7.22 -2.39 -0.02 3.44 16 27 H 0.05 2.36 6.91 -2.39 -0.02 2.35 16 28 H 0.28 12.93 8.31 -92.70 -0.77 12.16 16 29 H 0.14 5.04 7.61 -2.91 -0.02 5.02 16 30 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.11 5.33 7.28 -2.91 -0.02 5.30 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 1.04 8.11 -2.39 -0.02 1.02 16 Total: -1.00 -72.79 322.39 1.33 -71.46 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.09 Total: 18.47 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 3.63 Total: -39.75 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -0.98 Total: -86.13 kcal Atomic # 8 Polarization: -127.17 SS G_CDS: -4.13 Total: -131.31 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: 127.86 SS G_CDS: -0.32 Total: 127.55 kcal Total: -72.79 1.33 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290875607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.019 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds