Wall clock time and date at job start Tue Mar 31 2020 10:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 119.99880 * 2 1 4 4 H 1.48498 * 109.47241 * 239.99751 * 3 2 1 5 5 H 1.48494 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 119.99873 * 3 2 1 7 7 C 1.38952 * 120.00599 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00362 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99627 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21301 * 119.99652 * 355.10766 * 10 9 7 12 12 C 1.50690 * 120.00301 * 175.10467 * 10 9 7 13 13 C 1.53003 * 110.46034 * 302.04695 * 12 10 9 14 14 C 1.50703 * 109.46684 * 299.99790 * 13 12 10 15 15 C 1.38265 * 119.99001 * 267.07249 * 14 13 12 16 16 C 1.38220 * 120.02103 * 179.76888 * 15 14 13 17 17 C 1.38236 * 120.01988 * 0.51090 * 16 15 14 18 18 C 1.38336 * 119.98158 * 359.74447 * 17 16 15 19 19 Cl 1.73595 * 120.01502 * 179.97438 * 18 17 16 20 20 C 1.38194 * 119.99545 * 87.34910 * 14 13 12 21 21 C 1.54508 * 110.51354 * 179.43664 * 12 10 9 22 22 C 1.54477 * 104.06636 * 241.22009 * 21 12 10 23 23 O 1.44424 * 104.80273 * 23.97842 * 22 21 12 24 24 C 1.44422 * 105.27507 * 319.48888 * 23 22 21 25 25 H 0.96999 * 120.00518 * 0.02562 * 1 2 3 26 26 H 0.97007 * 120.00126 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47332 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.47090 * 59.99355 * 13 12 10 29 29 H 1.07998 * 119.98973 * 0.02562 * 15 14 13 30 30 H 1.08007 * 119.99045 * 180.23375 * 16 15 14 31 31 H 1.07994 * 120.01471 * 179.72452 * 17 16 15 32 32 H 1.08000 * 120.00565 * 359.96259 * 20 14 13 33 33 H 1.09006 * 110.51255 * 359.87038 * 21 12 10 34 34 H 1.09003 * 110.51170 * 122.57157 * 21 12 10 35 35 H 1.08998 * 110.37221 * 142.81132 * 22 21 12 36 36 H 1.08997 * 110.37328 * 265.14797 * 22 21 12 37 37 H 1.09001 * 110.36929 * 281.68286 * 24 23 22 38 38 H 1.08998 * 110.37284 * 159.34455 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2071 -3.5598 -0.0871 12 6 1.2480 -4.8605 0.1129 13 6 0.4133 -4.8894 1.3949 14 6 1.3212 -4.7428 2.5888 15 6 1.8116 -5.8674 3.2264 16 6 2.6482 -5.7336 4.3185 17 6 2.9867 -4.4755 4.7804 18 6 2.4921 -3.3500 4.1461 19 17 2.9160 -1.7696 4.7259 20 6 1.6589 -3.4844 3.0495 21 6 2.2286 -6.0539 0.0783 22 6 1.8053 -6.8514 -1.1751 23 8 1.1417 -5.8862 -2.0199 24 6 0.3482 -5.0781 -1.1238 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 -0.1216 -5.8370 1.4590 28 1 -0.3034 -4.0683 1.3805 29 1 1.5442 -6.8506 2.8684 30 1 3.0340 -6.6125 4.8138 31 1 3.6368 -4.3711 5.6364 32 1 1.2727 -2.6061 2.5538 33 1 3.2554 -5.7018 -0.0216 34 1 2.1189 -6.6645 0.9746 35 1 2.6816 -7.2584 -1.6797 36 1 1.1181 -7.6520 -0.9014 37 1 -0.5625 -5.6068 -0.8421 38 1 0.1050 -4.1229 -1.5890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455256607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:18 Heat of formation + Delta-G solvation = -90.235178 kcal Electronic energy + Delta-G solvation = -24134.971750 eV Core-core repulsion = 20580.952203 eV Total energy + Delta-G solvation = -3554.019547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72941 -39.95155 -39.04118 -37.44028 -36.01086 -35.23816 -33.21283 -31.96487 -31.48336 -30.43454 -27.15608 -26.94875 -24.18951 -23.76084 -22.84256 -22.36626 -20.27551 -19.76102 -18.07081 -17.60078 -17.08221 -17.00004 -16.53097 -16.40275 -16.18236 -15.97461 -15.59337 -15.13315 -14.68079 -14.59546 -14.33032 -14.13586 -13.81153 -13.46158 -13.30875 -12.99352 -12.81540 -12.68682 -12.45624 -12.34895 -12.24869 -12.16422 -12.10643 -12.03909 -11.65781 -11.51487 -11.49260 -10.79863 -10.17774 -9.98706 -9.77204 -9.56553 -8.46657 -5.92858 0.24314 0.37197 1.21887 1.33856 1.35899 1.45217 2.04303 2.26379 2.69524 3.02752 3.12125 3.26274 3.47839 3.76104 3.93963 4.00955 4.12199 4.16955 4.24342 4.35817 4.36463 4.41849 4.53551 4.60713 4.68927 4.77424 4.84712 4.92843 4.95220 5.04230 5.09778 5.33354 5.36565 5.41439 5.41598 5.60384 5.86196 5.96342 6.01744 6.59978 7.14066 7.56944 8.12585 8.70226 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.007905 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.255484 B = 3541.407469 C = 5823.194375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.322 4.322 8 H 0.070 0.930 9 N -0.564 5.564 10 C 0.462 3.538 11 O -0.630 6.630 12 C -0.094 4.094 13 C -0.061 4.061 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.052 4.052 19 Cl -0.091 7.091 20 C -0.119 4.119 21 C -0.138 4.138 22 C 0.046 3.954 23 O -0.401 6.401 24 C 0.059 3.941 25 H 0.277 0.723 26 H 0.394 0.606 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -15.367 8.157 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.452 4.452 8 H 0.088 0.912 9 N -0.199 5.199 10 C 0.249 3.751 11 O -0.517 6.517 12 C -0.097 4.097 13 C -0.098 4.098 14 C -0.077 4.077 15 C -0.124 4.124 16 C -0.122 4.122 17 C -0.141 4.141 18 C -0.079 4.079 19 Cl -0.063 7.063 20 C -0.138 4.138 21 C -0.176 4.176 22 C -0.030 4.030 23 O -0.320 6.320 24 C -0.018 4.018 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.185 0.815 30 H 0.188 0.812 31 H 0.165 0.835 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.574 -15.012 7.923 17.047 hybrid contribution 0.254 2.058 0.029 2.073 sum -1.320 -12.954 7.952 15.257 Atomic orbital electron populations 1.69624 1.06387 1.29081 1.50418 1.25780 0.96389 1.01645 0.96612 0.85261 0.78143 0.77967 0.78720 1.19947 1.19231 1.20190 1.19429 0.92201 0.84024 1.49528 0.91155 1.41785 1.08942 1.04365 1.64844 1.20360 0.87657 0.85801 0.81242 1.90463 1.16610 1.87633 1.56996 1.22009 0.96874 0.93491 0.97374 1.20717 0.95330 1.05612 0.88185 1.19893 0.98723 0.92268 0.96802 1.21532 0.96767 0.98780 0.95272 1.21502 0.97164 0.96991 0.96496 1.21319 1.00673 0.91159 1.00967 1.21154 1.01772 0.86489 0.98457 1.98345 1.92503 1.27208 1.88198 1.21147 0.98365 0.98886 0.95416 1.23039 0.99358 0.94661 1.00517 1.23650 0.97790 0.91614 0.89963 1.89100 1.63359 1.47726 1.31845 1.23585 0.94137 0.96026 0.88022 0.91392 0.77184 0.85089 0.90948 0.81490 0.81213 0.83535 0.87764 0.92253 0.86945 0.88884 0.88354 0.87176 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.36 13.05 21.66 0.28 -49.08 16 2 C 0.00 -0.21 5.50 84.93 0.47 0.25 16 3 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.32 -18.44 9.68 84.04 0.81 -17.62 16 8 H 0.07 4.39 7.17 -2.91 -0.02 4.37 16 9 N -0.56 -28.60 4.21 -306.99 -1.29 -29.89 16 10 C 0.46 21.83 4.86 87.65 0.43 22.26 16 11 O -0.63 -35.60 14.87 -3.09 -0.05 -35.64 16 12 C -0.09 -3.09 0.61 -51.91 -0.03 -3.12 16 13 C -0.06 -1.62 4.19 29.85 0.13 -1.49 16 14 C -0.08 -2.26 4.46 -19.87 -0.09 -2.35 16 15 C -0.11 -2.29 8.39 22.27 0.19 -2.10 16 16 C -0.10 -2.14 10.04 22.26 0.22 -1.92 16 17 C -0.12 -3.25 9.83 22.29 0.22 -3.03 16 18 C -0.05 -1.82 6.32 22.33 0.14 -1.68 16 19 Cl -0.09 -3.30 28.96 -2.72 -0.08 -3.37 16 20 C -0.12 -4.49 8.44 22.29 0.19 -4.30 16 21 C -0.14 -3.96 5.89 31.61 0.19 -3.77 16 22 C 0.05 1.12 7.63 72.48 0.55 1.67 16 23 O -0.40 -13.19 11.65 -148.98 -1.74 -14.92 16 24 C 0.06 1.80 6.72 72.49 0.49 2.28 16 25 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.39 19.11 7.30 -92.70 -0.68 18.43 16 27 H 0.13 2.15 8.06 -2.38 -0.02 2.13 16 28 H 0.07 2.09 7.61 -2.39 -0.02 2.07 16 29 H 0.17 2.17 7.21 -2.91 -0.02 2.15 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.10 4.75 7.23 -2.91 -0.02 4.73 16 33 H 0.06 2.23 6.50 -2.38 -0.02 2.21 16 34 H 0.11 2.32 5.39 -2.39 -0.01 2.30 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 2.33 7.86 -2.39 -0.02 2.31 16 38 H 0.07 2.49 7.60 -2.39 -0.02 2.47 16 Total: -1.00 -73.86 328.82 3.47 -70.38 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.42 Total: 30.88 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.90 Total: -14.92 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.01 Total: -78.97 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.78 Total: -50.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.08 Total: -3.37 kcal Total: -73.86 3.47 -70.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455256607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.851 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds