Wall clock time and date at job start Tue Mar 31 2020 10:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28431 * 125.18817 * 2 1 4 4 C 1.30840 * 110.98643 * 180.29322 * 3 2 1 5 5 C 1.39806 * 107.87259 * 359.71546 * 4 3 2 6 6 Cl 1.73602 * 127.33449 * 179.97438 * 5 4 3 7 7 C 1.36748 * 125.18650 * 179.80356 * 2 1 3 8 8 C 1.46998 * 126.90337 * 359.97438 * 7 2 1 9 9 O 1.21665 * 120.00257 * 99.63449 * 8 7 2 10 10 N 1.34781 * 120.00074 * 279.62745 * 8 7 2 11 11 C 1.40079 * 119.99983 * 174.84086 * 10 8 7 12 12 C 1.40427 * 125.97426 * 359.97438 * 11 10 8 13 13 C 1.35238 * 107.86499 * 179.72039 * 12 11 10 14 14 N 1.34972 * 107.86407 * 0.42111 * 13 12 11 15 15 C 1.46504 * 125.97329 * 179.83571 * 14 13 12 16 16 C 1.50695 * 109.46635 * 124.71802 * 15 14 13 17 17 H 1.07994 * 120.00604 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99605 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99984 * 359.72599 * 18 16 15 20 20 Si 1.86799 * 119.99891 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47446 * 179.72165 * 20 18 16 22 22 H 1.48504 * 109.47309 * 299.72795 * 20 18 16 23 23 H 1.48510 * 109.47041 * 59.72461 * 20 18 16 24 24 N 1.31229 * 125.97594 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.47390 * 275.18448 * 1 2 3 26 26 H 1.09003 * 109.47117 * 35.18565 * 1 2 3 27 27 H 1.09000 * 109.47000 * 155.18158 * 1 2 3 28 28 H 1.07997 * 126.06341 * 179.72857 * 4 3 2 29 29 H 0.96993 * 119.99829 * 354.84248 * 10 8 7 30 30 H 1.07999 * 126.06825 * 359.97438 * 12 11 10 31 31 H 1.08001 * 126.06673 * 180.29823 * 13 12 11 32 32 H 1.09003 * 109.46656 * 4.72205 * 15 14 13 33 33 H 1.08992 * 109.47047 * 244.72338 * 15 14 13 34 34 H 0.97000 * 120.00073 * 0.27768 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0496 0.0000 4 6 3.4735 0.7286 -0.0063 5 6 3.5630 -0.6666 -0.0041 6 17 5.0079 -1.6288 -0.0108 7 6 2.2530 -1.1176 0.0038 8 6 1.8009 -2.5163 0.0092 9 8 1.7813 -3.1533 -1.0273 10 7 1.4084 -3.0933 1.1622 11 6 0.8762 -4.3890 1.1513 12 6 0.6952 -5.1970 0.0171 13 6 0.1637 -6.3717 0.4251 14 7 0.0034 -6.3109 1.7639 15 6 -0.5462 -7.3701 2.6138 16 6 0.4396 -7.7011 3.7045 17 1 1.3810 -7.1748 3.7594 18 6 0.1395 -8.6758 4.6324 19 7 -1.0093 -9.3129 4.5687 20 14 1.3611 -9.0856 5.9848 21 1 0.8016 -10.1551 6.8499 22 1 2.6328 -9.5545 5.3779 23 1 1.6202 -7.8729 6.8020 24 7 0.4595 -5.0601 2.1993 25 1 -0.3634 0.0929 1.0234 26 1 -0.3633 0.8399 -0.5922 27 1 -0.3633 -0.9328 -0.4314 28 1 4.3040 1.4190 -0.0118 29 1 1.4944 -2.6114 1.9995 30 1 0.9412 -4.9295 -0.9999 31 1 -0.0897 -7.2090 -0.2083 32 1 -0.7334 -8.2589 2.0112 33 1 -1.4808 -7.0300 3.0596 34 1 -1.6438 -9.0999 3.8666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645975607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:21 Heat of formation + Delta-G solvation = 105.637119 kcal Electronic energy + Delta-G solvation = -22100.220567 eV Core-core repulsion = 18483.447088 eV Total energy + Delta-G solvation = -3616.773479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.81730 -42.35829 -40.61259 -37.74221 -36.56945 -35.64358 -34.48819 -33.03651 -31.87023 -31.08899 -28.40216 -28.13041 -25.75272 -24.58670 -23.00418 -22.66295 -21.85367 -21.00101 -19.36921 -19.21054 -18.36210 -17.67403 -17.16039 -16.90455 -16.76370 -16.16090 -15.84749 -15.60585 -15.34089 -15.06907 -14.80180 -14.16433 -14.13097 -13.98767 -13.77490 -13.71125 -13.25861 -12.98318 -12.84404 -12.63082 -12.18299 -11.96144 -11.82581 -11.69838 -11.41669 -11.04058 -10.69957 -10.49852 -9.95574 -9.93052 -9.31574 -8.78802 -6.56462 0.10234 0.45450 0.77056 1.08727 1.17162 1.33098 1.51568 1.57125 1.65258 1.78803 2.00005 2.14714 2.48163 3.00790 3.10097 3.39801 3.78427 3.84217 4.08204 4.16688 4.19969 4.29024 4.48710 4.50727 4.61024 4.74878 4.76073 4.93888 5.01615 5.40870 5.53335 5.68247 5.87805 5.95199 6.24215 6.40051 6.59429 6.69517 6.85884 7.18666 8.58521 Molecular weight = 309.07amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.003166 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.427263 B = 8842.387166 C = 9364.887797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.257 5.257 3 N -0.270 5.270 4 C 0.030 3.970 5 C -0.117 4.117 6 Cl -0.019 7.019 7 C -0.027 4.027 8 C 0.609 3.391 9 O -0.512 6.512 10 N -0.608 5.608 11 C 0.266 3.734 12 C -0.288 4.288 13 C 0.060 3.940 14 N -0.339 5.339 15 C 0.259 3.741 16 C -0.623 4.623 17 H 0.045 0.955 18 C -0.017 4.017 19 N -0.923 5.923 20 Si 1.117 2.883 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.275 1.275 24 N -0.336 5.336 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.229 0.771 29 H 0.425 0.575 30 H 0.171 0.829 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 20.003 -10.266 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.046 5.046 3 N -0.102 5.102 4 C -0.146 4.146 5 C -0.155 4.155 6 Cl 0.009 6.991 7 C -0.158 4.158 8 C 0.393 3.607 9 O -0.384 6.384 10 N -0.256 5.256 11 C 0.012 3.988 12 C -0.319 4.319 13 C -0.088 4.088 14 N -0.121 5.121 15 C 0.140 3.860 16 C -0.661 4.661 17 H 0.064 0.936 18 C -0.217 4.217 19 N -0.559 5.559 20 Si 0.938 3.062 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.201 1.201 24 N -0.167 5.167 25 H 0.130 0.870 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.245 0.755 29 H 0.263 0.737 30 H 0.188 0.812 31 H 0.221 0.779 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.673 19.353 -8.397 21.608 hybrid contribution 0.359 0.164 -1.739 1.783 sum 5.032 19.518 -10.135 22.561 Atomic orbital electron populations 1.22690 0.70065 1.06834 1.06976 1.45845 1.08769 1.00504 1.49463 1.73290 1.03751 1.12962 1.20149 1.24053 0.94481 0.92132 1.03972 1.21477 0.86922 0.93491 1.13647 1.98380 1.33074 1.70452 1.97174 1.20683 0.91758 0.88305 1.15094 1.16859 0.76521 0.84624 0.82736 1.90806 1.51277 1.63549 1.32738 1.42335 1.60088 1.12062 1.11154 1.19254 0.99302 0.87189 0.93047 1.21704 1.15627 0.94322 1.00231 1.23208 0.99885 1.00736 0.84954 1.48619 1.46507 1.10944 1.06002 1.19454 0.93890 0.82669 0.89992 1.22295 1.04739 1.24120 1.14967 0.93641 1.27212 1.00230 0.92496 1.01749 1.70948 1.08219 1.42086 1.34656 0.82905 0.73113 0.76846 0.73295 1.20013 1.19718 1.20092 1.77306 1.23701 0.94420 1.21286 0.87048 0.85509 0.88745 0.75498 0.73708 0.81184 0.77855 0.92611 0.96252 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.22 127.77 1.43 2.27 16 2 N -0.26 -4.77 3.75 -355.94 -1.34 -6.11 16 3 N -0.27 -5.02 11.89 -57.07 -0.68 -5.70 16 4 C 0.03 0.51 12.04 85.22 1.03 1.54 16 5 C -0.12 -2.51 6.89 22.72 0.16 -2.36 16 6 Cl -0.02 -0.43 29.24 -2.72 -0.08 -0.51 16 7 C -0.03 -0.63 6.71 40.75 0.27 -0.36 16 8 C 0.61 17.01 6.88 86.54 0.60 17.60 16 9 O -0.51 -17.10 14.26 -4.24 -0.06 -17.16 16 10 N -0.61 -17.74 5.44 -310.83 -1.69 -19.43 16 11 C 0.27 10.01 8.10 133.35 1.08 11.09 16 12 C -0.29 -10.48 9.61 22.11 0.21 -10.27 16 13 C 0.06 2.23 11.43 83.52 0.96 3.19 16 14 N -0.34 -15.20 3.67 -351.85 -1.29 -16.50 16 15 C 0.26 12.87 5.57 85.63 0.48 13.34 16 16 C -0.62 -34.73 9.24 25.60 0.24 -34.50 16 17 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 18 C -0.02 -0.93 5.46 84.66 0.46 -0.47 16 19 N -0.92 -53.06 13.65 21.45 0.29 -52.76 16 20 Si 1.12 49.08 29.90 68.60 2.05 51.13 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 24 N -0.34 -14.98 12.42 -54.48 -0.68 -15.65 16 25 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.18 7.66 -2.39 -0.02 1.17 16 28 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.42 10.54 8.81 -92.71 -0.82 9.72 16 30 H 0.17 5.90 5.92 -2.91 -0.02 5.88 16 31 H 0.20 5.80 8.06 -2.91 -0.02 5.78 16 32 H 0.06 2.65 7.94 -2.39 -0.02 2.63 16 33 H 0.02 1.02 8.00 -2.39 -0.02 1.00 16 34 H 0.26 14.80 7.22 -92.71 -0.67 14.13 16 Total: -1.00 -71.21 324.46 3.89 -67.32 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.45 Total: 14.30 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.91 Total: 1.08 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -5.38 Total: -116.15 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.06 Total: -17.16 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.13 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -71.21 3.89 -67.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645975607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.954 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds