Wall clock time and date at job start Tue Mar 31 2020 09:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99314 * 2 1 4 4 H 1.48501 * 109.46813 * 239.99661 * 3 2 1 5 5 H 1.48495 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47384 * 119.99989 * 3 2 1 7 7 C 1.37866 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00196 * 289.04066 * 10 9 7 12 12 C 1.53007 * 109.46856 * 265.27279 * 11 10 9 13 13 C 1.52998 * 117.49531 * 245.99064 * 12 11 10 14 14 C 1.52993 * 117.49826 * 177.33227 * 12 11 10 15 15 C 1.34782 * 119.99608 * 109.03538 * 10 9 7 16 16 O 1.21566 * 119.99401 * 178.57681 * 15 10 9 17 17 C 1.47772 * 120.00039 * 358.85020 * 15 10 9 18 18 C 1.39575 * 120.13274 * 327.77214 * 17 15 10 19 19 C 1.38399 * 119.80483 * 179.78801 * 18 17 15 20 20 O 1.35940 * 119.96233 * 180.20925 * 19 18 17 21 21 C 1.38878 * 120.07116 * 0.48791 * 19 18 17 22 22 C 1.38194 * 120.25912 * 359.74693 * 21 19 18 23 23 C 1.38160 * 120.19327 * 0.02562 * 22 21 19 24 24 Cl 1.73600 * 120.03402 * 179.97438 * 23 22 21 25 25 H 0.96997 * 120.00317 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47219 * 60.00180 * 9 7 2 27 27 H 1.09005 * 109.47311 * 300.00109 * 9 7 2 28 28 H 1.08998 * 109.47322 * 25.26707 * 11 10 9 29 29 H 1.08996 * 109.47258 * 145.27254 * 11 10 9 30 30 H 1.08999 * 115.54863 * 31.65587 * 12 11 10 31 31 H 1.09004 * 117.50002 * 359.97438 * 13 12 11 32 32 H 1.09005 * 117.49745 * 145.02224 * 13 12 11 33 33 H 1.09000 * 117.50034 * 214.97734 * 14 12 11 34 34 H 1.09001 * 117.49988 * 359.97438 * 14 12 11 35 35 H 1.07996 * 120.09541 * 0.02629 * 18 17 15 36 36 H 0.96704 * 113.99637 * 270.28011 * 20 19 18 37 37 H 1.08000 * 119.86797 * 179.71495 * 21 19 18 38 38 H 1.08005 * 119.89796 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 2.9940 -3.9004 -1.1987 12 6 2.2884 -4.9746 -2.0290 13 6 2.9844 -6.3299 -2.1685 14 6 2.9283 -5.3716 -3.3608 15 6 2.3519 -4.3721 1.1040 16 8 3.1229 -5.3120 1.0956 17 6 1.5731 -4.0661 2.3220 18 6 1.2344 -2.7462 2.6239 19 6 0.5011 -2.4677 3.7641 20 8 0.1658 -1.1837 4.0590 21 6 0.1122 -3.4980 4.6103 22 6 0.4502 -4.8054 4.3166 23 6 1.1780 -5.0961 3.1789 24 17 1.6008 -6.7399 2.8143 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 3.0974 -2.9921 -1.7923 29 1 3.9813 -4.2576 -0.9060 30 1 1.1998 -4.9710 -1.9749 31 1 3.9450 -6.4562 -1.6692 32 1 2.3535 -7.2181 -2.2067 33 1 2.2606 -5.6296 -4.1829 34 1 3.8516 -4.8673 -3.6457 35 1 1.5405 -1.9449 1.9676 36 1 0.8199 -0.7209 4.6005 37 1 -0.4560 -3.2764 5.5016 38 1 0.1444 -5.6021 4.9786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277707429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:57 Heat of formation + Delta-G solvation = -13.297042 kcal Electronic energy + Delta-G solvation = -23723.295167 eV Core-core repulsion = 20172.611908 eV Total energy + Delta-G solvation = -3550.683259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07975 -38.56740 -37.00250 -36.42735 -35.56988 -34.89162 -32.57436 -31.18221 -29.20803 -27.76574 -26.51418 -23.57771 -22.61822 -22.26148 -21.99603 -20.50568 -19.25764 -17.47342 -16.68187 -16.53058 -16.41144 -15.81383 -15.42300 -14.71664 -14.46578 -14.34801 -14.32244 -13.71183 -13.37848 -13.06146 -12.72128 -12.38473 -12.31788 -12.13239 -11.74103 -11.29258 -11.20666 -11.15359 -10.99874 -10.94786 -10.64410 -10.60520 -10.37261 -10.13421 -10.05273 -9.76952 -9.53305 -9.00949 -8.80662 -8.45781 -8.15073 -7.73612 -6.27085 -4.37506 1.09901 1.45103 2.47680 3.18139 3.24909 3.25314 3.30978 3.72682 3.99350 4.21753 4.25516 4.52562 4.99196 5.00826 5.11034 5.17787 5.30348 5.36691 5.45633 5.63528 5.75602 5.83737 5.90651 6.12000 6.16824 6.21287 6.23800 6.32581 6.42976 6.48353 6.62403 6.65986 6.78916 6.99563 7.16976 7.45743 7.64713 7.91954 7.96965 8.30845 8.68861 8.94182 9.31024 10.78068 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.007702 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.362673 B = 3634.758926 C = 6193.270605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.213 3.787 10 N -0.584 5.584 11 C 0.155 3.845 12 C -0.158 4.158 13 C -0.171 4.171 14 C -0.182 4.182 15 C 0.552 3.448 16 O -0.543 6.543 17 C -0.110 4.110 18 C -0.095 4.095 19 C 0.095 3.905 20 O -0.486 6.486 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.001 4.001 24 Cl -0.052 7.052 25 H 0.269 0.731 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.198 0.802 36 H 0.386 0.614 37 H 0.134 0.866 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -6.513 4.857 8.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.082 0.918 9 C 0.093 3.907 10 N -0.313 5.313 11 C 0.032 3.968 12 C -0.178 4.178 13 C -0.208 4.208 14 C -0.219 4.219 15 C 0.339 3.661 16 O -0.422 6.422 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.050 3.950 20 O -0.295 6.295 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.029 4.029 24 Cl -0.023 7.023 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.214 0.786 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.090 -7.130 4.455 8.477 hybrid contribution 0.567 1.049 0.201 1.210 sum 1.657 -6.080 4.655 7.835 Atomic orbital electron populations 1.69915 1.05975 1.27787 1.47398 1.24968 0.94844 0.99309 0.94281 0.86569 0.79574 0.82529 0.78914 1.20060 1.21024 1.19981 1.21350 0.93745 0.90230 1.53537 0.91772 1.20150 0.88138 0.82691 0.99677 1.48040 1.41022 1.31289 1.10942 1.20834 0.93480 0.97076 0.85399 1.22737 0.99571 0.96979 0.98464 1.22926 1.02586 0.93615 1.01629 1.22910 1.02819 1.04490 0.91717 1.18028 0.82613 0.82424 0.83022 1.90730 1.38255 1.29288 1.83935 1.19765 1.02115 0.92659 0.96806 1.23143 0.93611 0.98011 0.96525 1.18426 0.97857 0.84695 0.93998 1.84924 1.48190 1.22167 1.74240 1.21474 1.00534 0.92081 0.99762 1.20710 1.00041 0.96863 0.96453 1.20945 0.99852 0.86129 0.95980 1.98369 1.92096 1.17432 1.94427 0.92129 0.95132 0.92030 0.89331 0.91125 0.88069 0.88724 0.89676 0.89281 0.88976 0.78558 0.75891 0.84861 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.10 13.29 55.43 0.74 -22.36 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.55 -13.50 7.16 -34.45 -0.25 -13.74 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.21 4.95 4.68 -5.19 -0.02 4.92 16 10 N -0.58 -12.31 2.53 -176.19 -0.45 -12.76 16 11 C 0.16 2.92 5.53 -4.04 -0.02 2.90 16 12 C -0.16 -2.67 5.98 -90.62 -0.54 -3.21 16 13 C -0.17 -2.59 10.18 -26.70 -0.27 -2.86 16 14 C -0.18 -2.52 10.25 -26.70 -0.27 -2.79 16 15 C 0.55 11.73 7.19 -12.36 -0.09 11.64 16 16 O -0.54 -12.01 14.52 5.31 0.08 -11.93 16 17 C -0.11 -2.17 5.44 -104.96 -0.57 -2.74 16 18 C -0.09 -1.87 7.30 -39.02 -0.28 -2.15 16 19 C 0.10 1.63 6.70 -39.29 -0.26 1.36 16 20 O -0.49 -7.93 13.50 -19.55 -0.26 -8.20 16 21 C -0.12 -1.72 9.98 -39.36 -0.39 -2.11 16 22 C -0.12 -1.77 9.81 -39.63 -0.39 -2.16 16 23 C 0.00 -0.02 6.33 -39.07 -0.25 -0.27 16 24 Cl -0.05 -0.89 26.54 -51.86 -1.38 -2.27 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.49 4.05 -51.93 -0.21 1.28 16 28 H 0.09 1.67 7.74 -51.93 -0.40 1.27 16 29 H 0.07 1.32 7.33 -51.93 -0.38 0.94 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.20 4.39 4.04 -52.49 -0.21 4.18 16 36 H 0.39 4.28 9.06 45.56 0.41 4.69 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -28.38 336.43 -8.65 -37.03 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.71 Total: 10.40 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -3.71 Total: -9.53 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.29 Total: -35.12 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.19 Total: -20.12 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.38 Total: -2.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.38 -8.65 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277707429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.737 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds