Wall clock time and date at job start Tue Mar 31 2020 10:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 H 1.09001 * 109.47123 * 54.99908 * 3 2 1 5 5 C 1.50692 * 109.47051 * 175.00122 * 3 2 1 6 6 H 1.08001 * 120.00164 * 120.00356 * 5 3 2 7 7 C 1.37875 * 120.00027 * 299.99463 * 5 3 2 8 8 N 1.31518 * 119.99995 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00318 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47404 * 90.00370 * 9 7 5 11 11 H 1.48500 * 109.47737 * 210.00503 * 9 7 5 12 12 H 1.48502 * 109.47131 * 330.00411 * 9 7 5 13 13 N 1.46498 * 109.46823 * 295.00305 * 3 2 1 14 14 C 1.34774 * 120.00572 * 85.00038 * 13 3 2 15 15 O 1.21593 * 119.99591 * 359.97438 * 14 13 3 16 16 C 1.47534 * 120.00302 * 179.97438 * 14 13 3 17 17 C 1.39533 * 120.04314 * 359.97438 * 16 14 13 18 18 C 1.37891 * 120.16787 * 180.02562 * 17 16 14 19 19 Cl 1.73608 * 120.02491 * 179.83555 * 18 17 16 20 20 C 1.38734 * 119.95180 * 359.80862 * 18 17 16 21 21 C 1.37665 * 120.30997 * 359.97438 * 20 18 17 22 22 C 1.38870 * 120.87945 * 0.40452 * 21 20 18 23 23 O 1.35888 * 111.28795 * 178.96596 * 22 21 20 24 24 C 1.43777 * 109.23345 * 19.34192 * 23 22 21 25 25 C 1.51674 * 132.11729 * 180.91815 * 21 20 18 26 26 H 1.08997 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46847 * 300.00031 * 1 2 3 28 28 H 1.08997 * 109.47092 * 59.99982 * 1 2 3 29 29 H 1.09001 * 109.46847 * 239.99969 * 2 1 3 30 30 H 1.09002 * 109.46659 * 119.99816 * 2 1 3 31 31 H 0.97003 * 120.00080 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99964 * 264.99879 * 13 3 2 33 33 H 1.07994 * 119.91708 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.84801 * 180.02562 * 20 18 17 35 35 H 1.09002 * 110.75152 * 90.44206 * 24 23 22 36 36 H 1.09006 * 110.75449 * 213.61237 * 24 23 22 37 37 H 1.08997 * 110.94287 * 282.56122 * 25 21 20 38 38 H 1.09004 * 110.93921 * 46.25116 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8813 1.3818 10 1 6.4416 2.1143 2.0850 11 1 6.4396 -0.3097 2.1549 12 1 6.6135 0.8417 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6318 -0.4320 16 6 0.0450 3.3244 -2.6275 17 6 0.9358 3.3627 -3.7007 18 6 0.5740 3.9794 -4.8798 19 17 1.6869 4.0287 -6.2114 20 6 -0.6801 4.5600 -5.0014 21 6 -1.5676 4.5234 -3.9497 22 6 -1.2251 3.9155 -2.7490 23 8 -2.2328 4.0117 -1.8423 24 6 -3.4635 4.2934 -2.5302 25 6 -2.9839 5.0436 -3.7953 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0616 2.9496 32 1 2.2719 2.1231 -1.9978 33 1 1.9111 2.9083 -3.6078 34 1 -0.9618 5.0422 -5.9258 35 1 -3.9756 3.3697 -2.7996 36 1 -4.1089 4.9280 -1.9227 37 1 -2.9877 6.1215 -3.6340 38 1 -3.5927 4.7783 -4.6597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360925708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:06 Heat of formation + Delta-G solvation = -51.481163 kcal Electronic energy + Delta-G solvation = -23264.960034 eV Core-core repulsion = 19712.620987 eV Total energy + Delta-G solvation = -3552.339046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.092 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32913 -38.97354 -37.70326 -36.20246 -35.01305 -33.03639 -32.26919 -31.01160 -29.96777 -29.34185 -26.94267 -24.33804 -23.30656 -22.54177 -22.11550 -20.28913 -19.32385 -17.81698 -17.40804 -16.81127 -16.33817 -16.05325 -15.28766 -15.14428 -14.51501 -14.39282 -13.88458 -13.75972 -13.46247 -13.17150 -12.97983 -12.67322 -12.43496 -12.10604 -11.99655 -11.80470 -11.57376 -11.46053 -11.22858 -11.08323 -10.94326 -10.82484 -10.58238 -10.29509 -10.15228 -9.60158 -9.11333 -9.06492 -9.00939 -8.47447 -8.19515 -7.78680 -6.10272 -4.19640 0.75892 0.99266 1.97161 2.98048 3.21093 3.26469 3.33205 3.34946 3.95575 4.03733 4.10450 4.34510 4.42641 4.62538 4.77388 4.86904 5.10051 5.17738 5.21353 5.35549 5.40974 5.49084 5.66751 5.72927 5.96172 6.06938 6.23104 6.42791 6.50132 6.69762 6.97605 7.08253 7.23352 7.39370 7.46385 7.64402 7.75398 7.92476 8.20072 8.66411 8.79534 9.12956 9.47530 10.95083 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.004319 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.712773 B = 6480.788722 C = 7930.976559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.543 3.457 15 O -0.527 6.527 16 C -0.132 4.132 17 C -0.044 4.044 18 C -0.074 4.074 19 Cl -0.066 7.066 20 C -0.044 4.044 21 C -0.180 4.180 22 C 0.172 3.828 23 O -0.268 6.268 24 C 0.044 3.956 25 C -0.105 4.105 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 8.066 -15.812 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.327 3.673 15 O -0.405 6.405 16 C -0.137 4.137 17 C -0.064 4.064 18 C -0.100 4.100 19 Cl -0.037 7.037 20 C -0.063 4.063 21 C -0.181 4.181 22 C 0.123 3.877 23 O -0.180 6.180 24 C -0.031 4.031 25 C -0.142 4.142 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.787 7.894 -14.770 19.921 hybrid contribution 1.349 0.044 -0.593 1.475 sum -9.438 7.937 -15.364 19.701 Atomic orbital electron populations 1.21841 0.98329 0.98007 1.01289 1.21940 0.92627 0.99726 1.02310 1.18819 0.94255 0.89198 0.80770 0.93130 1.21221 0.90640 1.39046 1.06343 0.92067 1.24873 0.98574 0.94779 0.95372 1.69898 1.35114 1.37573 1.09328 0.86461 0.84887 0.77626 0.78203 1.20577 1.21093 1.19830 1.46457 1.14197 1.55811 1.18657 1.17817 0.83296 0.79748 0.86407 1.90808 1.51148 1.59331 1.39221 1.19628 0.92926 1.04357 0.96768 1.21053 0.99348 0.96001 0.89952 1.20431 0.92524 1.06469 0.90603 1.98367 1.61766 1.97594 1.45944 1.20146 0.90692 0.97282 0.98205 1.20663 0.98111 1.04342 0.94982 1.19533 0.89412 0.91068 0.87674 1.87088 1.15352 1.85317 1.30208 1.23961 0.86349 1.00245 0.92564 1.21803 0.91781 1.01469 0.99192 0.95879 0.93100 0.94320 0.95004 0.88221 0.92572 0.78061 0.83492 0.84558 0.90213 0.87224 0.88795 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.13 5.45 -26.72 -0.15 -3.27 16 3 C 0.27 6.88 2.24 -69.09 -0.15 6.72 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -14.91 4.97 -55.98 -0.28 -15.19 16 14 C 0.54 11.39 6.33 -12.47 -0.08 11.31 16 15 O -0.53 -12.85 13.00 -10.32 -0.13 -12.99 16 16 C -0.13 -2.24 5.89 -104.73 -0.62 -2.85 16 17 C -0.04 -0.62 9.30 -39.23 -0.36 -0.98 16 18 C -0.07 -0.89 6.32 -39.53 -0.25 -1.14 16 19 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 20 C -0.04 -0.48 9.81 -39.61 -0.39 -0.86 16 21 C -0.18 -2.11 6.27 -104.12 -0.65 -2.77 16 22 C 0.17 2.68 6.72 -38.45 -0.26 2.42 16 23 O -0.27 -4.29 10.13 -34.99 -0.35 -4.65 16 24 C 0.04 0.43 8.01 38.05 0.30 0.74 16 25 C -0.11 -0.87 7.12 -26.51 -0.19 -1.06 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 28 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 7.10 6.55 -40.82 -0.27 6.84 16 33 H 0.15 1.89 6.37 -52.49 -0.33 1.55 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -31.45 328.09 -9.10 -40.55 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.50 Total: 5.30 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.87 Total: -7.27 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.49 Total: -17.63 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -9.10 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360925708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.935 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds