Wall clock time and date at job start Tue Mar 31 2020 10:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 H 1.09001 * 109.47123 * 54.99908 * 3 2 1 5 5 C 1.50692 * 109.47051 * 175.00122 * 3 2 1 6 6 H 1.08001 * 120.00164 * 120.00356 * 5 3 2 7 7 C 1.37875 * 120.00027 * 299.99463 * 5 3 2 8 8 N 1.31518 * 119.99995 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00318 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47404 * 90.00370 * 9 7 5 11 11 H 1.48500 * 109.47737 * 210.00503 * 9 7 5 12 12 H 1.48502 * 109.47131 * 330.00411 * 9 7 5 13 13 N 1.46498 * 109.46823 * 295.00305 * 3 2 1 14 14 C 1.34774 * 120.00572 * 85.00038 * 13 3 2 15 15 O 1.21593 * 119.99591 * 359.97438 * 14 13 3 16 16 C 1.47534 * 120.00302 * 179.97438 * 14 13 3 17 17 C 1.39533 * 120.04314 * 359.97438 * 16 14 13 18 18 C 1.37891 * 120.16787 * 180.02562 * 17 16 14 19 19 Cl 1.73608 * 120.02491 * 179.83555 * 18 17 16 20 20 C 1.38734 * 119.95180 * 359.80862 * 18 17 16 21 21 C 1.37665 * 120.30997 * 359.97438 * 20 18 17 22 22 C 1.38870 * 120.87945 * 0.40452 * 21 20 18 23 23 O 1.35888 * 111.28795 * 178.96596 * 22 21 20 24 24 C 1.43777 * 109.23345 * 19.34192 * 23 22 21 25 25 C 1.51674 * 132.11729 * 180.91815 * 21 20 18 26 26 H 1.08997 * 109.46687 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46847 * 300.00031 * 1 2 3 28 28 H 1.08997 * 109.47092 * 59.99982 * 1 2 3 29 29 H 1.09001 * 109.46847 * 239.99969 * 2 1 3 30 30 H 1.09002 * 109.46659 * 119.99816 * 2 1 3 31 31 H 0.97003 * 120.00080 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99964 * 264.99879 * 13 3 2 33 33 H 1.07994 * 119.91708 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.84801 * 180.02562 * 20 18 17 35 35 H 1.09002 * 110.75152 * 90.44206 * 24 23 22 36 36 H 1.09006 * 110.75449 * 213.61237 * 24 23 22 37 37 H 1.08997 * 110.94287 * 282.56122 * 25 21 20 38 38 H 1.09004 * 110.93921 * 46.25116 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8813 1.3818 10 1 6.4416 2.1143 2.0850 11 1 6.4396 -0.3097 2.1549 12 1 6.6135 0.8417 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6318 -0.4320 16 6 0.0450 3.3244 -2.6275 17 6 0.9358 3.3627 -3.7007 18 6 0.5740 3.9794 -4.8798 19 17 1.6869 4.0287 -6.2114 20 6 -0.6801 4.5600 -5.0014 21 6 -1.5676 4.5234 -3.9497 22 6 -1.2251 3.9155 -2.7490 23 8 -2.2328 4.0117 -1.8423 24 6 -3.4635 4.2934 -2.5302 25 6 -2.9839 5.0436 -3.7953 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0616 2.9496 32 1 2.2719 2.1231 -1.9978 33 1 1.9111 2.9083 -3.6078 34 1 -0.9618 5.0422 -5.9258 35 1 -3.9756 3.3697 -2.7996 36 1 -4.1089 4.9280 -1.9227 37 1 -2.9877 6.1215 -3.6340 38 1 -3.5927 4.7783 -4.6597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360925708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:05 Heat of formation + Delta-G solvation = -70.675761 kcal Electronic energy + Delta-G solvation = -23265.792374 eV Core-core repulsion = 19712.620987 eV Total energy + Delta-G solvation = -3553.171387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.34531 -40.55714 -38.76110 -37.18708 -36.89389 -34.44948 -33.84718 -32.71535 -31.11476 -30.30946 -28.87847 -25.66193 -24.82100 -23.80173 -23.11852 -21.93602 -21.10210 -19.29552 -18.47049 -17.90291 -17.79325 -17.19686 -17.02741 -16.48244 -16.20023 -15.97119 -15.23988 -14.86675 -14.59580 -14.43172 -14.31158 -14.02072 -13.68983 -13.50148 -13.38564 -13.18830 -12.89327 -12.80803 -12.74657 -12.68784 -12.44297 -12.17620 -12.06820 -11.98211 -11.60941 -11.47249 -11.06726 -10.74766 -10.52480 -10.14939 -9.65438 -9.17615 -8.15910 -6.33548 -0.32410 -0.00664 1.03314 1.45334 1.45695 1.56484 1.81162 2.24686 2.33937 2.56566 2.65081 3.13596 3.29802 3.53217 3.71691 3.88051 4.04854 4.15635 4.21944 4.44618 4.47810 4.55004 4.63046 4.73925 4.74884 4.80630 4.91286 4.98898 5.03941 5.08947 5.24410 5.29086 5.42416 5.53803 5.60265 5.77558 5.90711 6.02196 6.15371 6.73236 6.93327 7.32343 7.52328 8.89732 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.004319 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.712773 B = 6480.788722 C = 7930.976559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.260 1.260 13 N -0.700 5.700 14 C 0.540 3.460 15 O -0.572 6.572 16 C -0.165 4.165 17 C -0.046 4.046 18 C -0.073 4.073 19 Cl -0.050 7.050 20 C -0.027 4.027 21 C -0.170 4.170 22 C 0.149 3.851 23 O -0.311 6.311 24 C 0.031 3.969 25 C -0.094 4.094 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.509 9.227 -19.096 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.184 1.184 13 N -0.350 5.350 14 C 0.328 3.672 15 O -0.453 6.453 16 C -0.170 4.170 17 C -0.065 4.065 18 C -0.100 4.100 19 Cl -0.021 7.021 20 C -0.046 4.046 21 C -0.171 4.171 22 C 0.100 3.900 23 O -0.224 6.224 24 C -0.042 4.042 25 C -0.130 4.130 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.168 0.832 34 H 0.193 0.807 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.131 0.869 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.941 9.068 -18.106 23.016 hybrid contribution 1.305 -0.252 0.370 1.379 sum -9.637 8.816 -17.736 22.026 Atomic orbital electron populations 1.21662 0.97150 0.99077 1.00041 1.21785 0.93579 0.99067 1.01433 1.18408 0.93846 0.89177 0.80971 0.98422 1.21553 0.91186 1.39104 1.06867 0.91030 1.25764 1.03378 0.94258 0.94920 1.70053 1.37112 1.38257 1.09851 0.85363 0.78998 0.77432 0.78654 1.20473 1.20851 1.18377 1.46202 1.15042 1.55975 1.17783 1.18454 0.82318 0.78868 0.87561 1.90768 1.52255 1.60970 1.41301 1.19316 0.94915 1.07088 0.95650 1.21035 0.99019 0.96386 0.90068 1.20510 0.93382 1.05824 0.90273 1.98378 1.61420 1.97493 1.44797 1.20570 0.89453 0.95453 0.99086 1.21077 0.99812 1.02905 0.93317 1.19860 0.89092 0.91787 0.89231 1.87034 1.17314 1.85603 1.32464 1.24361 0.84668 1.01524 0.93692 1.21918 0.89579 1.02128 0.99381 0.93430 0.95617 0.94279 0.93950 0.90714 0.92557 0.76408 0.83175 0.80709 0.89434 0.85117 0.86892 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.88 2.24 44.24 0.10 14.98 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -29.67 8.73 25.60 0.22 -29.45 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.93 5.29 84.65 0.45 1.37 16 8 N -0.91 -53.04 11.29 21.45 0.24 -52.80 16 9 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 N -0.70 -31.03 4.97 -449.28 -2.23 -33.27 16 14 C 0.54 23.88 6.33 86.70 0.55 24.43 16 15 O -0.57 -29.84 13.00 10.91 0.14 -29.70 16 16 C -0.17 -5.70 5.89 -19.93 -0.12 -5.82 16 17 C -0.05 -1.24 9.30 22.50 0.21 -1.04 16 18 C -0.07 -1.58 6.32 22.31 0.14 -1.44 16 19 Cl -0.05 -0.94 28.96 -2.72 -0.08 -1.02 16 20 C -0.03 -0.48 9.81 22.25 0.22 -0.26 16 21 C -0.17 -3.52 6.27 -19.54 -0.12 -3.65 16 22 C 0.15 4.61 6.72 23.00 0.15 4.76 16 23 O -0.31 -10.14 10.13 -77.37 -0.78 -10.92 16 24 C 0.03 0.56 8.01 72.56 0.58 1.14 16 25 C -0.09 -1.18 7.12 30.74 0.22 -0.96 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.02 1.31 7.84 -2.39 -0.02 1.29 16 28 H 0.04 1.83 5.64 -2.39 -0.01 1.81 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 4.22 5.95 -2.39 -0.01 4.20 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.40 15.11 6.55 -92.71 -0.61 14.50 16 33 H 0.15 3.80 6.37 -2.91 -0.02 3.78 16 34 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -72.94 328.09 3.19 -69.74 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.50 Total: 20.42 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.38 Total: -7.07 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.99 Total: -86.06 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.64 Total: -40.62 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -72.94 3.19 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360925708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.931 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds